mRNA_L-elsbetiae_contig9130.18159.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9130.18159.1
Unique NamemRNA_L-elsbetiae_contig9130.18159.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9130.18159.1 vs. uniprot
Match: D7FHZ0_ECTSI (Phosphorylated adapter RNA export protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHZ0_ECTSI)

HSP 1 Score: 310 bits (794), Expect = 8.290e-98
Identity = 209/356 (58.71%), Postives = 238/356 (66.85%), Query Frame = 3
Query:   39 MSNFDDGMFDFGDDDDADSFLTGKLAALGIDEDLELSGGEEENEDPAGGGTSPADLSSAPAAEVVSSP-------APGRVPTEDRGQPPAATEAQGEAP-QPVSPA-------------VRSSAGXXXXXXXXEEGSGEAIEEGELLEMLKKPLQASRGRPQQHGSRDNSRSGRIDGSGGXXXXXXXXXXXXXXXXXSNGRAHGRNVTISECAIWMCDRLDEPKYYLMCQVVSTIGYKKSRGLLERVQQTQDAGGMPTADGSRKRTAGGVFFTLLKEHMEPAKLKELYADEIRVKKERDRARRSANKRKAEAALAGEDVMTPRDPPRXXXXXXXXXXXXXSARAARDMGTWVGPGA 1043
            MS FDD   DFG DDD D FLTGKLAALGIDEDLELSGGEEE+++ A      AD S+ P   V  SP       A   VP   R   PA  +  G  P +  SP               R +            G G A+E+GEL++M+ +PL+ SRGR Q        RS R  G GG XXXXXXXX         +G+A GRNVTI ECA W+C+RL EPKYYLMCQVVSTIGY K+R LLE VQ+TQ+ GGMPTADGSRKRTAGGVFFTLLK+HMEP++LKELYADE+RVKKE+DRARR+ANKRKAEAALAGEDVMTPR+PPR  XXXXXXXXX  + RA RDMG W GP A
Sbjct:    1 MSTFDDDDMDFGGDDDGDDFLTGKLAALGIDEDLELSGGEEEDDNRAPATDPAADSSNKPPGIVAPSPQQASASTAVAAVPAASRSTAPAPADDWGAPPSEGCSPGDAGIWGEVDSWGETRIATPTVEAPPAAGGGRGTAVEDGELVQMIDQPLRTSRGREQ--------RSARDSGRGGGXXXXXXXXRGKRGRPKKDGKARGRNVTIKECAEWVCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLKKHMEPSRLKELYADELRVKKEKDRARRAANKRKAEAALAGEDVMTPRNPPRNRXXXXXXXXX--ATRAGRDMGKWAGPTA 346          
BLAST of mRNA_L-elsbetiae_contig9130.18159.1 vs. uniprot
Match: A0A835ZKK4_9STRA (Phosphorylated adapter RNA export protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKK4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.530e-20
Identity = 49/100 (49.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:  597 TISECAIWMCDRLDEPKYYLMCQVVSTIGYKKSRGLLERVQQTQDAGGMPTADGSRKRTAGGVFFTLLKEHMEPAKLKELYADEIRVKKERDRARRSANK 896
            T+ + AI +C++LDEPKYYLMCQVV  +G+ K+  LL++  Q +  GG+ TADG R+R+ GGVF TLL++ + P K+K +YA++ RV+K R R  R+  K
Sbjct:  165 TVKDAAIRLCEQLDEPKYYLMCQVVWHLGFNKTNRLLKQTVQIERDGGLRTADGKRRRSPGGVFLTLLRDAVTPEKMKAIYAEDKRVQKLRARTVRAMRK 264          
BLAST of mRNA_L-elsbetiae_contig9130.18159.1 vs. uniprot
Match: A0A8J2X059_9STRA (Phosphorylated adapter RNA export protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X059_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.500e-12
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 3
Query:  633 LDEPKYYLMCQVVSTIGYKKSRGLLERVQQTQDAGGMPTADGSRKRTAGGVFFTLLKEHMEPAKLKELY-ADEIRVKKERDRARRSANKRKAEAALAGEDV 932
            LDE    L+ + +  IG K ++ LL+RV +TQ  GG+ TADGSRKRT GGVFF LL++ M P   K+L  AD  R K+E +  R+   KR  E    G D 
Sbjct:   95 LDEQNIRLLREAIIAIGAKAAKRLLKRVVETQRDGGLATADGSRKRTPGGVFFHLLRDEMTPEAYKQLMKADSKRKKRELEERRKQREKRAREGGTPGGDA 195          
BLAST of mRNA_L-elsbetiae_contig9130.18159.1 vs. uniprot
Match: A0A7D9EF16_PARCT (Phosphorylated adapter RNA export protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EF16_PARCT)

HSP 1 Score: 70.1 bits (170), Expect = 1.830e-9
Identity = 40/97 (41.24%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  621 MCDRLDEPKYYLMCQVVSTIGYKKSRGLLERVQQTQDAGGMPTADGSRKRTAGGVFFTLLKE--HMEPAKLKELYADEIRVKKERDRARRSA-NKRK 902
            + +RL+E K+ L+ + V  IG KK+  L    +Q Q  GGM T +GSR+RT+GGVF TLLK   +    ++KE++ D++ +KKE  + +++A N+RK
Sbjct:  166 IAERLEEHKFSLIIETVKIIGGKKALDLFNETKQVQLNGGMKTCNGSRRRTSGGVFLTLLKSSNYATDEQIKEIFKDDLSIKKEALKRKKAAYNQRK 262          
BLAST of mRNA_L-elsbetiae_contig9130.18159.1 vs. uniprot
Match: A9TJL2_PHYPA (Phosphorylated adapter RNA export protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TJL2_PHYPA)

HSP 1 Score: 69.7 bits (169), Expect = 3.990e-9
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  588 RNVTISECAIWMCDRLDEPKYYLMCQVVSTIGYKKSRGLLERVQQTQDAGGMPTADGSRKRTAGGVFFTLLKEHMEPAKLKELYADEIRVKKERDRAR 881
            + V I    +  C R++E KY L  + V  IG +  +GLL +V   Q  GG  TADG R+R+AGGV + LL++H+ P   KE+  +  R   E+ +A+
Sbjct:  113 KTVIIERFVVQTCRRIEETKYPLFREAVDRIGIEAMKGLLNQVDAIQKCGGQMTADGLRRRSAGGVLWNLLRDHVGPVLYKEIMKEGNRKHIEQQKAK 210          
BLAST of mRNA_L-elsbetiae_contig9130.18159.1 vs. uniprot
Match: UPI001069D661 (uncharacterized protein LOC114518314 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069D661)

HSP 1 Score: 67.4 bits (163), Expect = 1.640e-8
Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = 3
Query:  621 MCDRLDEPKYYLMCQVVSTIGYKKSRGLLERVQQTQDAGGMPTADGSRKRTAGGVFFTLLKE--HMEPAKLKELYADEIRVKKE 866
            + +RL+E K+ L+ + V  IG KK   L +  ++ Q +GGM T +GSR+RT+GGVFFTLLK   +    ++KE++ +++ +KKE
Sbjct:  146 IAERLEEHKFALIIETVKVIGGKKVLELFKETKRIQLSGGMKTCNGSRRRTSGGVFFTLLKSSNYATDEQIKEIFKEDLTMKKE 229          
BLAST of mRNA_L-elsbetiae_contig9130.18159.1 vs. uniprot
Match: Q017X4_OSTTA (Phosphorylated adapter RNA export protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q017X4_OSTTA)

HSP 1 Score: 65.9 bits (159), Expect = 3.710e-8
Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = 3
Query:  588 RNVTISECAIWMCDRLDEPKYYLMCQVVSTIGYKKSRGLLERVQQTQDAGGMPTADGSRKRTAGGVFFTLLKEHMEPAKLKELYADEIRVKKERDRARRSANKRKAEAALAGEDVMTPRD 947
            R    S  A  +   LDEPK  L+ + +  +G    R   E    TQ  GG  TA+G RKRT GG+F+++++  ++     E++A+E   +KER +ARR+  +     A  G++ + P D
Sbjct:   94 RGADASRSARELAQALDEPKVRLLARAIDALGESTCRAYAEEAVATQRNGGELTANGERKRTTGGIFWSIVRARVDKETYDEIFAEERERQKERVKARRARQR-----AADGKENVPPAD 208          
BLAST of mRNA_L-elsbetiae_contig9130.18159.1 vs. uniprot
Match: A0A293N1Q8_ORNER (Phosphorylated adapter RNA export protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293N1Q8_ORNER)

HSP 1 Score: 63.9 bits (154), Expect = 1.230e-7
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 3
Query:  621 MCDRLDEPKYYLMCQVVSTIGYKKSRGLLERVQQTQDAGGMPTADGSRKRTAGGVFFTLLK 803
            + +RL EPK +L+ +VV  +G  ++R LL   +  + AGG+ T DGSR+RTAGGVFF LLK
Sbjct:  134 IAERLQEPKKHLLERVVRILGEARARQLLSMTEDVESAGGLLTIDGSRRRTAGGVFFHLLK 194          
BLAST of mRNA_L-elsbetiae_contig9130.18159.1 vs. uniprot
Match: A0A293M5C7_ORNER (Phosphorylated adapter RNA export protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293M5C7_ORNER)

HSP 1 Score: 63.9 bits (154), Expect = 2.530e-7
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 3
Query:  621 MCDRLDEPKYYLMCQVVSTIGYKKSRGLLERVQQTQDAGGMPTADGSRKRTAGGVFFTLLK 803
            + +RL EPK +L+ +VV  +G  ++R LL   +  + AGG+ T DGSR+RTAGGVFF LLK
Sbjct:  223 IAERLQEPKKHLLERVVRILGEARARQLLSMTEDVESAGGLLTIDGSRRRTAGGVFFHLLK 283          
BLAST of mRNA_L-elsbetiae_contig9130.18159.1 vs. uniprot
Match: A0A426U3M5_9CHLR (Phosphorylated adapter RNA export protein n=1 Tax=Candidatus Viridilinea halotolerans TaxID=2491704 RepID=A0A426U3M5_9CHLR)

HSP 1 Score: 63.5 bits (153), Expect = 3.640e-7
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  576 RAHGRNVTISECAIWMCDRLDEP---KYYLMCQVVSTIGYKKSRGLLERVQQTQDAGGMPTADGSRKRTAGGVFFTLLKEHM 812
            R HG   T    A  + DRLDE    +  ++ ++V+ IG K++  +L+   Q +  GGMPT DG+R+RT GG+FF L+KE +
Sbjct:  119 RRHGSTFTPDFIAAMIADRLDETEGERSLVVWRIVAHIGVKRAWAVLKETLQIEAQGGMPTEDGTRQRTLGGIFFFLIKEQI 200          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9130.18159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHZ0_ECTSI8.290e-9858.71Phosphorylated adapter RNA export protein n=2 Tax=... [more]
A0A835ZKK4_9STRA7.530e-2049.00Phosphorylated adapter RNA export protein n=1 Tax=... [more]
A0A8J2X059_9STRA1.500e-1245.54Phosphorylated adapter RNA export protein n=1 Tax=... [more]
A0A7D9EF16_PARCT1.830e-941.24Phosphorylated adapter RNA export protein n=1 Tax=... [more]
A9TJL2_PHYPA3.990e-937.76Phosphorylated adapter RNA export protein n=1 Tax=... [more]
UPI001069D6611.640e-841.67uncharacterized protein LOC114518314 n=1 Tax=Dendr... [more]
Q017X4_OSTTA3.710e-832.50Phosphorylated adapter RNA export protein n=2 Tax=... [more]
A0A293N1Q8_ORNER1.230e-750.82Phosphorylated adapter RNA export protein (Fragmen... [more]
A0A293M5C7_ORNER2.530e-750.82Phosphorylated adapter RNA export protein (Fragmen... [more]
A0A426U3M5_9CHLR3.640e-740.24Phosphorylated adapter RNA export protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9130contigL-elsbetiae_contig9130:1080..3698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.5
Seed ortholog evalue3.1e-83
Seed eggNOG ortholog2880.D7FHZ0
KEGG koko:K14291
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.snRNA export from nucleus
EggNOG OGsKOG3948@1,KOG3948@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Ec32 ortholog descriptionPhosphorylated adapter RNA export protein, RNA-binding domain
Ec32 orthologEc-12_006420.1
Exons3
Model size1620
Cds size1011
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9130.18159.1prot_L-elsbetiae_contig9130.18159.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9130 1118..3127 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816987.9383922-UTR-L-elsbetiae_contig9130:1079..11171622816987.9383922-UTR-L-elsbetiae_contig9130:1079..1117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9130 1080..1117 +
1691683963.809215-UTR-L-elsbetiae_contig9130:1079..11171691683963.809215-UTR-L-elsbetiae_contig9130:1079..1117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9130 1080..1117 +
1622816987.9881935-UTR-L-elsbetiae_contig9130:3127..36981622816987.9881935-UTR-L-elsbetiae_contig9130:3127..3698Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9130 3128..3698 +
1691683963.8611808-UTR-L-elsbetiae_contig9130:3127..36981691683963.8611808-UTR-L-elsbetiae_contig9130:3127..3698Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9130 3128..3698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816987.9530072-CDS-L-elsbetiae_contig9130:1117..11681622816987.9530072-CDS-L-elsbetiae_contig9130:1117..1168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9130 1118..1168 +
1691683963.8202386-CDS-L-elsbetiae_contig9130:1117..11681691683963.8202386-CDS-L-elsbetiae_contig9130:1117..1168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9130 1118..1168 +
1622816987.9663758-CDS-L-elsbetiae_contig9130:1554..21931622816987.9663758-CDS-L-elsbetiae_contig9130:1554..2193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9130 1555..2193 +
1691683963.8300974-CDS-L-elsbetiae_contig9130:1554..21931691683963.8300974-CDS-L-elsbetiae_contig9130:1554..2193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9130 1555..2193 +
1622816987.9766085-CDS-L-elsbetiae_contig9130:2806..31271622816987.9766085-CDS-L-elsbetiae_contig9130:2806..3127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9130 2807..3127 +
1691683963.8435564-CDS-L-elsbetiae_contig9130:2806..31271691683963.8435564-CDS-L-elsbetiae_contig9130:2806..3127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9130 2807..3127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9130.18159.1

>prot_L-elsbetiae_contig9130.18159.1 ID=prot_L-elsbetiae_contig9130.18159.1|Name=mRNA_L-elsbetiae_contig9130.18159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=337bp
MSNFDDGMFDFGDDDDADSFLTGKLAALGIDEDLELSGGEEENEDPAGGG
TSPADLSSAPAAEVVSSPAPGRVPTEDRGQPPAATEAQGEAPQPVSPAVR
SSAGGGGGGGGGEEGSGEAIEEGELLEMLKKPLQASRGRPQQHGSRDNSR
SGRIDGSGGGAGRKGGGGGAGRGRAKSNGRAHGRNVTISECAIWMCDRLD
EPKYYLMCQVVSTIGYKKSRGLLERVQQTQDAGGMPTADGSRKRTAGGVF
FTLLKEHMEPAKLKELYADEIRVKKERDRARRSANKRKAEAALAGEDVMT
PRDPPRQRRRESGGGGGGGSARAARDMGTWVGPGAP*
back to top

mRNA from alignment at L-elsbetiae_contig9130:1080..3698+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9130.18159.1 ID=mRNA_L-elsbetiae_contig9130.18159.1|Name=mRNA_L-elsbetiae_contig9130.18159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2619bp|location=Sequence derived from alignment at L-elsbetiae_contig9130:1080..3698+ (Laminarionema elsbetiae ELsaHSoW15)
CCCACACCACCTACACTTGCTGTTCCCCTGCTAGCCGGATGTCTAACTTT GATGATGGCATGTTTGACTTTGGGGATGATGACGATGCGGTGAGCTTAAG TTCGCTGTAAAAGTGCCAAATTGCCCAGGGAAACGCAGGCTACATATTTT GTAGCTCACAGAGGGATGTGAGATTTCAAAAATACTCCGTATATAAATAT GGTGTCTAGAGAAGGATAGCGTAGACAGCAGCAGGAGTTGTACATGCACA TGGTAACAAAGAGCGAACTGCGATACAGCATTCCACCCTTCGTTTTCTTT ATCTCGCCGGCGATCCAGGTCGACTAGCTTCGTAATTCTGTTCCCCACTC CCTTAGCGCTGTGTGCAAGGATTCCTGCCGCACAAAATGCCTGCTGATGC TGATCTGCCCCCCCCCCCCCGCGCCTTCCCCCACAAACATGAAAATGACT ACCCAAATGGCCAACGCCCAAACAGGACAGTTTCTTGACCGGAAAGCTGG CCGCGCTGGGCATCGACGAAGACCTCGAGCTTTCGGGGGGCGAAGAAGAG AACGAAGATCCTGCTGGCGGCGGCACCTCGCCCGCCGATCTTTCTTCGGC GCCAGCCGCCGAGGTGGTCTCATCACCGGCGCCTGGAAGGGTCCCTACCG AGGACCGTGGACAGCCCCCTGCCGCCACCGAAGCCCAGGGGGAAGCGCCA CAACCGGTCTCTCCGGCGGTAAGATCCAGCGCAGGAGGAGGAGGAGGAGG AGGGGGGGGGGAGGAGGGGAGCGGGGAGGCCATAGAAGAGGGAGAGTTGC TGGAGATGCTGAAGAAGCCCTTACAAGCGTCCCGTGGCCGCCCGCAGCAG CACGGATCTCGGGATAACAGTAGAAGTGGTCGCATCGACGGGAGCGGGGG GGGAGCGGGGAGGAAGGGGGGGGGCGGAGGTGCGGGGCGTGGCCGGGCAA AGAGCAACGGCAGGGCGCACGGACGCAATGTTACGATCAGCGAGTGCGCC ATTTGGATGTGCGACCGTCTCGACGAGCCCAAGTACTACCTCATGTGTCA AGTTGTGTCGACCATCGGGTACAAGAAGAGCAGGGGGTTGCTGGAGAGAG TGCAGCAGACTCAGGTGAGAGGGTCTGCTGGGAAAACGACCGCTTTTTTT GTAGAAAGGCTCATGTATGTAGAAAACAGAAACCCGGTTGCATCCGTGTA TCTACACGTGCGTTCTGCAACCGCCCACGGGTTGCGATGGAGCTGTGCAC GTGGGACAGAAAGGTCGTGTCGAAGGCCCGAATATCTGTGAAAAATACAG GTTTGTTTAGGGTTGACAAAGGTCTGAACCAGCCTCGCGCACCGAAATAA GTGCAGTTCCTACGCCCTCGTTTGATAGCGCCACACACTTCCGCTGCTGC CTACAATAGTCTCCGCGCACGAGTTCTGCTGTCAAGTCGGTATATTTGTT TTTTTATAGCCCTTGGTCCAAAATGATTTGATGCGACCGCGCTCCGAATC AATGGACTTGTCTTGGTCCCAGGCGGCCCACTGCCATGACCGCTTCCGCC CCCCCCGCCCCCCCCCCCCCCCCAATGGTCGAACGACTACGGCAAGAGGC AAGATGTGAAAGAGTACAGTAGTAAGGTGAGTACCCCCCCCCCCCTCCGC TCTCTACGCATAGCATTCATTGCGGACTGCCACAACAATCTCATCGCCGG ACTTCCGAAACAATCAACCGAATGCAGGACGCGGGAGGCATGCCGACCGC GGATGGCAGTCGAAAACGTACCGCCGGGGGTGTCTTCTTCACCCTGCTCA AGGAGCACATGGAGCCCGCCAAGCTCAAGGAGCTCTACGCCGACGAGATC CGGGTCAAGAAGGAGAGAGATCGGGCGCGCAGATCGGCCAACAAGCGCAA GGCCGAGGCGGCCCTGGCGGGGGAGGATGTGATGACACCCAGAGATCCCC CGAGGCAGAGACGGCGCGAAAGCGGGGGCGGCGGCGGCGGTGGTTCTGCC AGAGCTGCGAGAGATATGGGTACGTGGGTCGGCCCAGGTGCCCCGTGATG GTACTGCCATCGGTGGCATTGCTGACGCTGATGCTGGTGTTTCGACGCGC TCGAGCGGACATGATATTCTCCGGTGGTGGTGAAGAAGGGGGTGCCCCTA GGGTTTGTCTACTAATCTATCTCTCTATTGCTGCGAGCTCGGTGGCTTCG TCATTGTGGCTGCCACCGCCAGCTCCGGAGATACAGCACGAGGGGAGATG CTCGGGCTGGGTGTTTGGCCTATCTTTCGTAGTGTACAGGAGGCAGCCTG ACAAGAGACAGCGGGTGGTTTCTGAGGTACCTCGTGGTTTCTGAGGTAAC CTCGTGGTTTCTGAGGTAACCTCACGGCCCATTCGTTTGGGTGGTCCGCT CTGTGTTTAGCTCACTCCTTCCGGTGAAAGGTGCGGTAGATCCAATGCTC CGTTTTCCGAAACGGTCATGCTCGATGCGGTGTTGGTGCCAAAAAAAGTG TATGGGGCAGGCCCTCGTTGACTAATCAGTAAGTGTGTTTTCCAGGCTCC TGAATAGTGCAAGTGTTTATCGTGCGAGTGTTTAAGAGAGCTGCAGGGGG GAGGCAGGGCACGGGCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9130:1080..3698+

>mRNA_L-elsbetiae_contig9130.18159.1 ID=mRNA_L-elsbetiae_contig9130.18159.1|Name=mRNA_L-elsbetiae_contig9130.18159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2022bp|location=Sequence derived from alignment at L-elsbetiae_contig9130:1080..3698+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTAACTTTGATGATGGCATGTTTGACTTTGGGGATGATGACGATGC
GATGTCTAACTTTGATGATGGCATGTTTGACTTTGGGGATGATGACGATG
CGGACAGTTTCTTGACCGGAAAGCTGGCCGCGCTGGGCATCGACGAAGAC
CTCGAGCTTTCGGGGGGCGAAGAAGAGAACGAAGATCCTGCTGGCGGCGG
CACCTCGCCCGCCGATCTTTCTTCGGCGCCAGCCGCCGAGGTGGTCTCAT
CACCGGCGCCTGGAAGGGTCCCTACCGAGGACCGTGGACAGCCCCCTGCC
GCCACCGAAGCCCAGGGGGAAGCGCCACAACCGGTCTCTCCGGCGGTAAG
ATCCAGCGCAGGAGGAGGAGGAGGAGGAGGGGGGGGGGAGGAGGGGAGCG
GGGAGGCCATAGAAGAGGGAGAGTTGCTGGAGATGCTGAAGAAGCCCTTA
CAAGCGTCCCGTGGCCGCCCGCAGCAGCACGGATCTCGGGATAACAGTAG
AAGTGGTCGCATCGACGGGAGCGGGGGGGGAGCGGGGAGGAAGGGGGGGG
GCGGAGGTGCGGGGCGTGGCCGGGCAAAGAGCAACGGCAGGGCGCACGGA
CGCAATGTTACGATCAGCGAGTGCGCCATTTGGATGTGCGACCGTCTCGA
CGAGCCCAAGTACTACCTCATGTGTCAAGTTGTGTCGACCATCGGGTACA
AGAAGAGCAGGGGGTTGCTGGAGAGAGTGCAGCAGACTCAGGACAGTTTC
TTGACCGGAAAGCTGGCCGCGCTGGGCATCGACGAAGACCTCGAGCTTTC
GGGGGGCGAAGAAGAGAACGAAGATCCTGCTGGCGGCGGCACCTCGCCCG
CCGATCTTTCTTCGGCGCCAGCCGCCGAGGTGGTCTCATCACCGGCGCCT
GGAAGGGTCCCTACCGAGGACCGTGGACAGCCCCCTGCCGCCACCGAAGC
CCAGGGGGAAGCGCCACAACCGGTCTCTCCGGCGGTAAGATCCAGCGCAG
GAGGAGGAGGAGGAGGAGGGGGGGGGGAGGAGGGGAGCGGGGAGGCCATA
GAAGAGGGAGAGTTGCTGGAGATGCTGAAGAAGCCCTTACAAGCGTCCCG
TGGCCGCCCGCAGCAGCACGGATCTCGGGATAACAGTAGAAGTGGTCGCA
TCGACGGGAGCGGGGGGGGAGCGGGGAGGAAGGGGGGGGGCGGAGGTGCG
GGGCGTGGCCGGGCAAAGAGCAACGGCAGGGCGCACGGACGCAATGTTAC
GATCAGCGAGTGCGCCATTTGGATGTGCGACCGTCTCGACGAGCCCAAGT
ACTACCTCATGTGTCAAGTTGTGTCGACCATCGGGTACAAGAAGAGCAGG
GGGTTGCTGGAGAGAGTGCAGCAGACTCAGGACGCGGGAGGCATGCCGAC
CGCGGATGGCAGTCGAAAACGTACCGCCGGGGGTGTCTTCTTCACCCTGC
TCAAGGAGCACATGGAGCCCGCCAAGCTCAAGGAGCTCTACGCCGACGAG
ATCCGGGTCAAGAAGGAGAGAGATCGGGCGCGCAGATCGGCCAACAAGCG
CAAGGCCGAGGCGGCCCTGGCGGGGGAGGATGTGATGACACCCAGAGATC
CCCCGAGGCAGAGACGGCGCGAAAGCGGGGGCGGCGGCGGCGGTGGTTCT
GCCAGAGCTGCGAGAGATATGGGTACGTGGGTCGGCCCAGGTGCCCCGTG
AGACGCGGGAGGCATGCCGACCGCGGATGGCAGTCGAAAACGTACCGCCG
GGGGTGTCTTCTTCACCCTGCTCAAGGAGCACATGGAGCCCGCCAAGCTC
AAGGAGCTCTACGCCGACGAGATCCGGGTCAAGAAGGAGAGAGATCGGGC
GCGCAGATCGGCCAACAAGCGCAAGGCCGAGGCGGCCCTGGCGGGGGAGG
ATGTGATGACACCCAGAGATCCCCCGAGGCAGAGACGGCGCGAAAGCGGG
GGCGGCGGCGGCGGTGGTTCTGCCAGAGCTGCGAGAGATATGGGTACGTG
GGTCGGCCCAGGTGCCCCGTGA
back to top