mRNA_L-elsbetiae_contig9032.18061.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9032.18061.1
Unique NamemRNA_L-elsbetiae_contig9032.18061.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9032.18061.1 vs. uniprot
Match: A0A6H5JKP4_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP4_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.090e-21
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:    1 GGGGVPADEDGEDSDGLDPAHPDTCKICFCERVDILFLPCRHQCTCSGCGAGYRGKLCILCRAPIERAQKVIRM 222
            G GGV  D+  EDSDGLDP HPDTCKIC    VDILFLPC H CTCS CG+ Y GK CILCR  +++ Q+VI++
Sbjct:  287 GAGGV--DDSDEDSDGLDPDHPDTCKICLDALVDILFLPCAHHCTCSRCGSAYEGKPCILCRRVVDKVQRVIKL 358
[Close]
BLAST of mRNA_L-elsbetiae_contig9032.18061.1 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.310e-20
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   37 DSDGLDPAHPDTCKICFCERVDILFLPCRHQCTCSGCGAGYRGKLCILCRAPIERAQKVIRM 222
            DSDGLDP HPDTCKIC    VDILFLPC HQCTCS CG+ Y GK CILCR  +++ Q+VI++
Sbjct:  955 DSDGLDPDHPDTCKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIKL 1016
[Close]
BLAST of mRNA_L-elsbetiae_contig9032.18061.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.250e-19
Identity = 45/67 (67.16%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   22 DEDGEDSDGLDPAHPDTCKICFCERVDILFLPCRHQCTCSGCGAGYRGKLCILCRAPIERAQKVIRM 222
            DED  DSDGLDP HPDTCKIC    V ILFLPC HQCTC  CG+G+ GK CI+CR  + RAQ VIR+
Sbjct: 1007 DED-XDSDGLDPDHPDTCKICMDALVGILFLPCAHQCTCVRCGSGFVGKPCIICRQKVTRAQPVIRL 1072
[Close]
BLAST of mRNA_L-elsbetiae_contig9032.18061.1 vs. uniprot
Match: UPI00117AD610 (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI00117AD610)

HSP 1 Score: 50.8 bits (120), Expect = 1.800e-5
Identity = 21/47 (44.68%), Postives = 27/47 (57.45%), Query Frame = 1 
Query:   73 CKICFCERVDILFLPCRHQCTCSGCGAGYRGKLCILCRAPIERAQKV 213
            C IC     +I+FLPC+H CTC+ CG G     C +CR PI    K+
Sbjct:    3 CIICLTSERNIVFLPCKHCCTCANCGLGL--DWCAVCREPIRELMKI 47
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9032.18061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JKP4_9PHAE1.090e-2163.51RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FX21_ECTSI3.310e-2067.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8V2_9PHAE5.250e-1967.16RING-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI00117AD6101.800e-544.68hypothetical protein n=1 Tax=Klebsiella pneumoniae... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9032contigL-elsbetiae_contig9032:1678..3148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size674
Cds size267
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9032.18061.1prot_L-elsbetiae_contig9032.18061.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9032 2084..3148 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816979.0346437-UTR-L-elsbetiae_contig9032:1677..20831622816979.0346437-UTR-L-elsbetiae_contig9032:1677..2083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9032 1678..2083 -
1691683956.878131-UTR-L-elsbetiae_contig9032:1677..20831691683956.878131-UTR-L-elsbetiae_contig9032:1677..2083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9032 1678..2083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816979.0451813-CDS-L-elsbetiae_contig9032:2083..22481622816979.0451813-CDS-L-elsbetiae_contig9032:2083..2248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9032 2084..2248 -
1691683956.8930235-CDS-L-elsbetiae_contig9032:2083..22481691683956.8930235-CDS-L-elsbetiae_contig9032:2083..2248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9032 2084..2248 -
1622816979.0556717-CDS-L-elsbetiae_contig9032:3046..31481622816979.0556717-CDS-L-elsbetiae_contig9032:3046..3148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9032 3047..3148 -
1691683956.9130206-CDS-L-elsbetiae_contig9032:3046..31481691683956.9130206-CDS-L-elsbetiae_contig9032:3046..3148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9032 3047..3148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9032.18061.1

>prot_L-elsbetiae_contig9032.18061.1 ID=prot_L-elsbetiae_contig9032.18061.1|Name=mRNA_L-elsbetiae_contig9032.18061.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
GGGGVPADEDGEDSDGLDPAHPDTCKICFCERVDILFLPCRHQCTCSGCG
AGYRGKLCILCRAPIERAQKVIRMHIKQGTTARAFIHT*
back to top

mRNA from alignment at L-elsbetiae_contig9032:1678..3148-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9032.18061.1 ID=mRNA_L-elsbetiae_contig9032.18061.1|Name=mRNA_L-elsbetiae_contig9032.18061.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1471bp|location=Sequence derived from alignment at L-elsbetiae_contig9032:1678..3148- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGGGGCGGGGTCCCCGCGGACGAGGACGGTGAGGATTCGGACGGCCT
CGACCCGGCCCACCCGGACACGTGCAAGATCTGCTTTTGCGAGCGCGTGG
ACGTGAGTTAAAAATGGTCGTGGTGCTTATGCTTTCTGGCGTCTCGTGCG
ATTGGACAACGTTCAGACATTTCGTGCCCGTGTTTTGTTTCGCTATGTAC
ATGCAATGCATAGGTAGACATTGGTCAACATTTGCGGCGTGTTTTTTCTG
TTTGGACGAAACTCCTCGGTCGGCGGTCCGCGTCGTTCACGGCCGAGGCG
CCTCCATGCTGCGGCGTGTGGCTGTTGTTCTTCGTTGCTCGCTGCTCTCT
GTTTTTTTCTTCCTTCTTGAGAACCGTTGCTTCTCTTCCTCCTCCTCCTC
CTCCCCAAATGGTGCACAAGCAAGCTCTTTGAATGTACCCATCTACATAT
CTTGGGGGGCACAGCAGTTTTACACCCCTGCCTGCCTGCCTGCCTGCCTG
CCTGCCTGCCTGCCCTGCCCGCTTGCCTGCGGGGGACACACGAACCGTTC
TTCCATGCTGACGTCGCTAATCCCTTGCTATTATTTAACGGTACAATCTA
AACTCCATCTCGGCGGCCGGTAGAGGTATACAGGTTCGAGGAATCAAACA
CGACCTGCCCAAAGATCCCGCTCTAACCGAGAACTGACTCTACATACAGG
CTCATTTTCTCGAGCAGCTACTCACAGTCCACGTGGCGAATCGAATGTGA
ACCCAACCCGCCCTTTTCCGTCCTCCGCTTTCTGCCGTGCTTTCTGTTGC
GTTCCGATGCTGGGGGGGGGGGGTGTGTGTGCAAATGCGTCATACATACT
ATGGTTGTGTGACATGCGACGGAATTTTTTTTTTAAATAAACGAGGACAG
ATCCTGTTCCTGCCGTGCCGTCACCAGTGCACGTGCTCCGGGTGCGGCGC
CGGGTACAGGGGGAAGCTGTGCATCCTTTGCCGGGCGCCCATCGAGAGGG
CGCAGAAGGTCATCAGGATGCACATCAAGCAGGGCACCACCGCCCGTGCG
TTCATCCACACATAGCATGTGGAGCGTTTTTGTTGATGTGCTTGTTCCGC
AAAGTAGACCCACTCCTTTTTTGCTGTTTTTTTGTTTCTGTGCTTGCTGT
TTCCCCGCCGCGATGAGTGAAGCGTTTGTGTTCGTGCGTCTGTCTGTGCG
TGCAGTTGTTGCTGCTGTGTGTTTGTTCCTGGTGTGAGAAACGGCGGGCC
GTTTTGGTTGTTGTGTTTCCTGCCCTGCAGAGTACGGCGAGGACAGAAGA
GCACCACCACCCCAGGCGGGCCGGGATGGACGGCGTGTGTATGTAGCGTG
CCAGAGTAGAGCGGAATAATAGCTGACCCCCGAGGGAGTGTGTTCAGTTT
ATCTCGCCTGCGTAGCTCCTACTGCGAACAAGAGAGATTTCGTGACGATG
ACTCGCGCGTGGCACGGTCAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9032:1678..3148-

>mRNA_L-elsbetiae_contig9032.18061.1 ID=mRNA_L-elsbetiae_contig9032.18061.1|Name=mRNA_L-elsbetiae_contig9032.18061.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig9032:1678..3148- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGGGGCGGGGTCCCCGCGGACGAGGACGGTGAGGATTCGGACGGCCT
CGACCCGGCCCACCCGGACACGTGCAAGATCTGCTTTTGCGAGCGCGTGG
ACGGCGGGGGCGGGGTCCCCGCGGACGAGGACGGTGAGGATTCGGACGGC
CTCGACCCGGCCCACCCGGACACGTGCAAGATCTGCTTTTGCGAGCGCGT
GGACATCCTGTTCCTGCCGTGCCGTCACCAGTGCACGTGCTCCGGGTGCG
GCGCCGGGTACAGGGGGAAGCTGTGCATCCTTTGCCGGGCGCCCATCGAG
AGGGCGCAGAAGGTCATCAGGATGCACATCAAGCAGGGCACCACCGCCCG
TGCGTTCATCCACACATAGATCCTGTTCCTGCCGTGCCGTCACCAGTGCA
CGTGCTCCGGGTGCGGCGCCGGGTACAGGGGGAAGCTGTGCATCCTTTGC
CGGGCGCCCATCGAGAGGGCGCAGAAGGTCATCAGGATGCACATCAAGCA
GGGCACCACCGCCCGTGCGTTCATCCACACATAG
back to top