mRNA_L-elsbetiae_contig9008.18030.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9008.18030.1
Unique NamemRNA_L-elsbetiae_contig9008.18030.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9008.18030.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 3.270e-23
Identity = 55/106 (51.89%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  109 EHKNRCVDALFVVMDQACEGGGKCWFVSTLELQLVSLEFCSACRSVPTLRVRVEDSLPRSLWSPPGSD--------------RVPVVRALHLTWAISTGRLFQGAA 384
            E   R  DA  + + QACEGG K W+ ST ELQL SL+ C ACRS PTL VRV    P SLWSPP                 RVPVVRAL LTWA S   L Q AA
Sbjct:    4 EGYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAA 109          
BLAST of mRNA_L-elsbetiae_contig9008.18030.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.360e-22
Identity = 54/106 (50.94%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  109 EHKNRCVDALFVVMDQACEGGGKCWFVSTLELQLVSLEFCSACRSVPTLRVRVEDSLPRSLWSP------PG--------SDRVPVVRALHLTWAISTGRLFQGAA 384
            E + RC+DA  + + QACEGG K W+ STLELQL SL+ C ACR+   L V V+D  PRSLWS       P         S RVPVVRAL LTWA+S   L + AA
Sbjct:    6 EWRTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAA 111          
BLAST of mRNA_L-elsbetiae_contig9008.18030.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.710e-20
Identity = 51/104 (49.04%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  115 KNRCVDALFVVMDQACEGGGKCWFVSTLELQLVSLEFCSACRSVPTLRVRVEDSLPRSLWSPPGS--------------DRVPVVRALHLTWAISTGRLFQGAA 384
            ++ C+ A  V ++Q C G  K W+ STLELQLVSLEFC ACR VPTL VRV+   PRSLWSP  S              +RVP V+A  LTWA+    L Q +A
Sbjct:   14 RSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSA 117          
BLAST of mRNA_L-elsbetiae_contig9008.18030.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.890e-20
Identity = 52/103 (50.49%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  118 NRCVDALFVVMDQACEGGGKCWFVSTLELQLVSLEFCSACRSVPTLRVRVEDSLPRSLWSPPG--------------SDRVPVVRALHLTWAISTGRLFQGAA 384
            ++C+DA  V ++QAC+G  K W+VSTLELQLVSLE C ACR V TL VRV+   P SLW P                S RVPVV+A  LTWA+  G L Q +A
Sbjct:    7 SKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSA 109          
BLAST of mRNA_L-elsbetiae_contig9008.18030.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.170e-19
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  115 KNRCVDALFVVMDQACEGGGKCWFVSTLELQLVSLEFCSACRSVPTLRVRVEDSLPRSLWSP 300
            +++C+DA  V ++Q C+G  K W+ STLELQLVSLEFC ACR VPTL VRV+   PRSLWSP
Sbjct:   38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSP 99          
BLAST of mRNA_L-elsbetiae_contig9008.18030.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 8.560e-17
Identity = 48/100 (48.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  127 VDALFVVMDQACEGGGKCWFVSTLELQLVSLEFCSACRSVPTLRVRVEDSLPRSLWSPPGS--------------DRVPVVRALHLTWAISTGRLFQGAA 384
            +D L V ++QAC+G  K W+VSTLELQLVSLE C ACRS   L V V +  P +LWS   S              +RVP V+AL  TWA+   RL Q AA
Sbjct:   90 LDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAA 189          
BLAST of mRNA_L-elsbetiae_contig9008.18030.1 vs. uniprot
Match: A0A6H5JHB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.790e-16
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  118 NRCVDALFVVMDQACEGGGKCWFVSTLELQLVSLEFCSACRSVPTLRVRVEDSLPRSLWSPP--GSDRVPVVRALHLTW 348
            +RC+DA  + + QA  G    W+ STL+LQ V L  CSACRSVPT  VR++D  P SLW P    S RVPVV  L LTW
Sbjct:  141 SRCLDAFAITLHQAYGGRRGHWYKSTLQLQCVCLALCSACRSVPTWHVRIDDQTPHSLWDPNVRTSSRVPVVLGLRLTW 219          
BLAST of mRNA_L-elsbetiae_contig9008.18030.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.050e-15
Identity = 45/90 (50.00%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  115 KNRCVDALFVVMDQACEGGGKCWFVSTLELQLVSLEFCSACRSVPTLRVRVEDSLPRSLWSPPGSDRVPVVRALHLTWAISTGRLFQGAA 384
            +  CVDA  V +++ C+GG + W+ STLELQ VSLEFC ACR VPT       S    L S  G  R PVVRA  LTWA+S   L Q  A
Sbjct:   16 RGECVDAFIVALNRTCDGGEQRWYASTLELQPVSLEFCVACRRVPTSH---STSTVGRLVS--GVSRAPVVRAYSLTWALSMDVLLQSCA 100          
BLAST of mRNA_L-elsbetiae_contig9008.18030.1 vs. uniprot
Match: A0A6H5JJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.360e-14
Identity = 40/63 (63.49%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  166 GGGKCWFVSTLELQLVSLEFCSACRSVPTLRVRVEDSLPRSLWSPP--GSDRVPVVRALHLTW 348
            GGG  W+ STL+LQ VSL  CSACRSVPTL VR++   P SLW P    S RVPVV AL LTW
Sbjct:  128 GGGGHWYKSTLQLQCVSLALCSACRSVPTLHVRIDGQAPHSLWDPNVRTSSRVPVVLALRLTW 190          
BLAST of mRNA_L-elsbetiae_contig9008.18030.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.400e-14
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   94 HRSMGEHKNRCVDALFVVMDQACEGGGKCWFVSTLELQLVSLEFCSACRSVPTLRVRVEDSLPRSLWSPPGS--------------DRVPVVRALHLTWAI 354
            H+ +G  ++ C+DA  V + QA +G  K W+VSTLELQLVSLEFC ACRS  +  V++    P SLWSP  S               RVP V+A    WA+
Sbjct:   21 HQGLG--RSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWAL 119          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9008.18030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G7F9_ECTSI3.270e-2351.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LIJ3_9PHAE5.360e-2250.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV1_9PHAE2.710e-2049.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNI6_9PHAE5.890e-2050.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0Z9_ECTSI1.170e-1962.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTK8_ECTSI8.560e-1748.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHB0_9PHAE8.790e-1653.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2L2_9PHAE4.050e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJW8_9PHAE1.360e-1463.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8K9_9PHAE1.400e-1443.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9008contigL-elsbetiae_contig9008:852..2216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-03_003840.1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-25_003520.2
Exons2
Model size384
Cds size384
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816976.9718971-CDS-L-elsbetiae_contig9008:851..11231622816976.9718971-CDS-L-elsbetiae_contig9008:851..1123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9008 852..1123 -
1691683955.4206462-CDS-L-elsbetiae_contig9008:851..11231691683955.4206462-CDS-L-elsbetiae_contig9008:851..1123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9008 852..1123 -
1622816976.9872656-CDS-L-elsbetiae_contig9008:2104..22161622816976.9872656-CDS-L-elsbetiae_contig9008:2104..2216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9008 2105..2216 -
1691683955.4308534-CDS-L-elsbetiae_contig9008:2104..22161691683955.4308534-CDS-L-elsbetiae_contig9008:2104..2216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9008 2105..2216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9008.18030.1prot_L-elsbetiae_contig9008.18030.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9008 852..2216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9008.18030.1

>prot_L-elsbetiae_contig9008.18030.1 ID=prot_L-elsbetiae_contig9008.18030.1|Name=mRNA_L-elsbetiae_contig9008.18030.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MLRATSQWHTDIPTRPVRASGAETEILLRGVHRSMGEHKNRCVDALFVVM
DQACEGGGKCWFVSTLELQLVSLEFCSACRSVPTLRVRVEDSLPRSLWSP
PGSDRVPVVRALHLTWAISTGRLFQGAA
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mRNA from alignment at L-elsbetiae_contig9008:852..2216-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9008.18030.1 ID=mRNA_L-elsbetiae_contig9008.18030.1|Name=mRNA_L-elsbetiae_contig9008.18030.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1365bp|location=Sequence derived from alignment at L-elsbetiae_contig9008:852..2216- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCGAGCCACGAGCCAGTGGCATACAGACATACCGACACGTCCCGT CCGAGCTTCGGGGGCTGAGACCGAAATCCTGCTGCGCGGGGTGCATCGCA GCATGGGTGAACGTAAGAAGGATGCCCAACCACCGCTCACTGTTGCCACA TGCGGCTGATGATGCTGTGATGCGGGTGCCCGCGCCCGTCGATGGCGATG TATGTATGTGTGTGTGTGTGTCCTTCCCATTTATTTTGGCGACAGTCCCC CCAAGTGGAGACGTGTACTATAGAGTGCACTACACCTTGCGGTGTACTTA GAGGTACTACACTTTGCAGTGCATTTGTATGTACAACTAGAACCAACCGG GGTCACACAGGAGGAGGTGAACACTGGGGCTTTTTCTTCTTTTTTATTTT ATTTTTATTGCCCCACCTTCCTCCTGCGGTTCTTGCACTTGGGTTTTATT GCGAGAAGGGTTCAGCTGTCCCTTTCCCTCGTCAACGTGATTACGTCGAT GTAGACTGTAGACTATTAGCTAGATACCAGGGATGGGGAAACCCCGAATG AACCACGTTGCCTATCGGTAATTACCGCTACCGCGAGGGGACGAAAGCGC CCAAATCCCCGGGGGTTCCGCGTCTAGCATACTTCGTTGCTTTGCATGTC AGTGCTGGTTGTAATGTTGGTGTATATCTAGATATGGTGCATGGTACCCC CAAAGCTGCTACTCCTGCAGCTGCCCGGGTTGCATCGTACATAAAGAGCG CACAGAGCAGAGAGTATCCAAGTTCAGAAAAGAGACCAATTTTGTTTTTT TTATTCGAGCGAAACGAGTTTCTAGTTCACACCTGAGTTGGCAATAATAG GGGTCCATCTGAAAAAAAAAGGGAAACTTGTATCCTTGTAGATATAGTCT ACAACCAAAAATAATTACATATTATCTAGACTAGACTACTACTGTTGTTG CTCGTTCGCATGACTTTGCCACGTGCGTGATCTTACCGACTTGTGCGATG CTGAGCTTCCATCCGTCCCAACTTTGTCGACTGCGTTTCTTACCACGGTA CCTTCCTGCACATCGACATTTCGTGTTCCGTTTTATTCCCCAGACAAAAA TCGGTGCGTGGACGCCTTATTTGTCGTTATGGATCAAGCATGCGAGGGAG GGGGGAAGTGCTGGTTTGTCTCTACGCTGGAGCTACAGCTGGTGTCGCTG GAGTTCTGCAGCGCATGCAGAAGCGTCCCGACCTTGCGCGTGCGCGTCGA AGACTCATTACCCCGCAGCTTGTGGTCACCTCCCGGGTCGGATCGCGTGC CAGTCGTTCGGGCTCTCCATTTGACTTGGGCGATTTCGACAGGGCGCCTG TTTCAGGGCGCCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9008:852..2216-

>mRNA_L-elsbetiae_contig9008.18030.1 ID=mRNA_L-elsbetiae_contig9008.18030.1|Name=mRNA_L-elsbetiae_contig9008.18030.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig9008:852..2216- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCGAGCCACGAGCCAGTGGCATACAGACATACCGACACGTCCCGT
CCGAGCTTCGGGGGCTGAGACCGAAATCCTGCTGCGCGGGGTGCATCGCA
GCATGGGTGAACATGCTTCGAGCCACGAGCCAGTGGCATACAGACATACC
GACACGTCCCGTCCGAGCTTCGGGGGCTGAGACCGAAATCCTGCTGCGCG
GGGTGCATCGCAGCATGGGTGAACACAAAAATCGGTGCGTGGACGCCTTA
TTTGTCGTTATGGATCAAGCATGCGAGGGAGGGGGGAAGTGCTGGTTTGT
CTCTACGCTGGAGCTACAGCTGGTGTCGCTGGAGTTCTGCAGCGCATGCA
GAAGCGTCCCGACCTTGCGCGTGCGCGTCGAAGACTCATTACCCCGCAGC
TTGTGGTCACCTCCCGGGTCGGATCGCGTGCCAGTCGTTCGGGCTCTCCA
TTTGACTTGGGCGATTTCGACAGGGCGCCTGTTTCAGGGCGCCGCGACAA
AAATCGGTGCGTGGACGCCTTATTTGTCGTTATGGATCAAGCATGCGAGG
GAGGGGGGAAGTGCTGGTTTGTCTCTACGCTGGAGCTACAGCTGGTGTCG
CTGGAGTTCTGCAGCGCATGCAGAAGCGTCCCGACCTTGCGCGTGCGCGT
CGAAGACTCATTACCCCGCAGCTTGTGGTCACCTCCCGGGTCGGATCGCG
TGCCAGTCGTTCGGGCTCTCCATTTGACTTGGGCGATTTCGACAGGGCGC
CTGTTTCAGGGCGCCGCG
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