mRNA_L-elsbetiae_contig90.18014.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig90.18014.1
Unique NamemRNA_L-elsbetiae_contig90.18014.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig90.18014.1 vs. uniprot
Match: A0A6H5LB71_9PHAE (PC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB71_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 6.830e-51
Identity = 110/203 (54.19%), Postives = 137/203 (67.49%), Query Frame = 1
Query:    1 MQRLGWSAKRCGRRNLT-HTLS--RLSSSSTGSEHDDFWTEAQTEAKTTPAYQQAA-RASSDTP-SRFVDGDQWAAPGNFGPGRMPMGQAYGPSTS----GDRNNSGPPPFTPSTNTLDPHQRHL--PEPPFDMLSSMHLSPVKQVDVRTFKGTVLVDIRQYFKNDDGRISATKKGAALTVPQWRRLQAAMGDIDSKLREIEQ 576
            MQR G SA+R G  +L  H+ S  +LSS S+G EHDDFWT A+TEA+ TPAYQQAA  A++ TP +    GD+WA PG   PG MPMG+AY PS+S    G R++S       S+NT +        P P FDM SS HLSPV+QVDVR+FKG  LVDIRQYF+  +G+   TKKG ALT+PQWRRLQ AM DID ++  +E+
Sbjct:    1 MQRFGVSARRRGFPSLLIHSSSSRKLSSFSSGPEHDDFWTAAKTEAQATPAYQQAAANATAPTPWTPTATGDRWAQPGGPSPGTMPMGEAYKPSSSSKMYGGRSSSS---NGRSSNTFNSDSGDFVPPPPTFDMQSSTHLSPVRQVDVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALEE 200          
BLAST of mRNA_L-elsbetiae_contig90.18014.1 vs. uniprot
Match: D7FYS7_ECTSI (PC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS7_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.160e-22
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  367 MLSSMHLSPVKQVDVRTFKGTVLVDIRQYFKNDDGRISATKKGAALTVPQWRRLQAAMGDIDSKLREIEQ 576
            M SSMHLSPV+Q DVR FKG  LVDIRQYF+  +G+ + TKKG ALT+PQWRRLQ AM DID ++  +E+
Sbjct:    1 MQSSMHLSPVRQADVRLFKGRPLVDIRQYFRGAEGQAAPTKKGIALTIPQWRRLQEAMADIDKEIFALEE 70          
BLAST of mRNA_L-elsbetiae_contig90.18014.1 vs. uniprot
Match: A0A1X7U2Q5_AMPQE (PC4 domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U2Q5_AMPQE)

HSP 1 Score: 64.7 bits (156), Expect = 3.030e-10
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  385 LSPVKQVDVRTFKGTVLVDIRQYFKNDDGRISATKKGAALTVPQWRRLQAAMGDIDSKL 561
            LS  + V+VRTFKG +++DIR+Y+ NDDG     KKG +L+V QW +L+ AM  ID ++
Sbjct:   51 LSAKRFVNVRTFKGRIMIDIREYYVNDDGENRPGKKGISLSVDQWEKLKEAMETIDERI 109          
BLAST of mRNA_L-elsbetiae_contig90.18014.1 vs. uniprot
Match: A0A7M7G0M9_STRPU (PC4 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7G0M9_STRPU)

HSP 1 Score: 63.9 bits (154), Expect = 6.380e-10
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  364 DMLSSMHLSPVKQVDVRTFKGTVLVDIRQYFKNDDGRISATKKGAALTVPQWRRLQAAMGDIDSKLREI 570
            D      LS  + V+VR F+G VL+DIR+Y++ + G +   KKG +LTV QWR+L + + DIDS++ E+
Sbjct:   46 DTSEMFSLSRQRFVNVREFRGKVLIDIREYYEKEVGDLLPGKKGISLTVDQWRKLVSQVDDIDSRIEEM 114          
BLAST of mRNA_L-elsbetiae_contig90.18014.1 vs. uniprot
Match: UPI001455409E (activated RNA polymerase II transcriptional coactivator p15-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455409E)

HSP 1 Score: 63.5 bits (153), Expect = 1.070e-9
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  382 HLSPVKQ---VDVRTFKGTVLVDIRQYFKNDDGRISATKKGAALTVPQWRRLQAAMGDIDSKLREI 570
            H+ P+ +   V+VR F+G VL+DIR+Y+ ++ G +   KKG +LTV QW +L+ AM D++  +RE+
Sbjct:   57 HMYPLARQRFVNVREFRGKVLIDIREYYTDNSGELKPGKKGISLTVEQWEKLKDAMEDVNDSVREL 122          
BLAST of mRNA_L-elsbetiae_contig90.18014.1 vs. uniprot
Match: A0A1B6KUG9_9HEMI (PC4 domain-containing protein n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6KUG9_9HEMI)

HSP 1 Score: 62.0 bits (149), Expect = 2.570e-9
Identity = 26/69 (37.68%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  364 DMLSSMHLSPVKQVDVRTFKGTVLVDIRQYFKNDDGRISATKKGAALTVPQWRRLQAAMGDIDSKLREI 570
            D + S H+  +K + VRTFKG V +DIR+Y++ + G +   KKG +LT PQW+++   + D++  L+++
Sbjct:   36 DDIESFHIEGMKYLKVRTFKGKVFIDIREYYEAN-GDLKPGKKGISLTAPQWKKVVGLVDDVEEALKKV 103          
BLAST of mRNA_L-elsbetiae_contig90.18014.1 vs. uniprot
Match: A0A8C5L2B5_JACJA (Activated RNA polymerase II transcriptional coactivator p15 n=3 Tax=Jaculus jaculus TaxID=51337 RepID=A0A8C5L2B5_JACJA)

HSP 1 Score: 62.4 bits (150), Expect = 3.210e-9
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 1
Query:  394 VKQVDVRTFKGTVLVDIRQYFKNDDGRISATKKGAALTVPQWRRLQAAMGDIDSKLREI 570
            +K V VR FKG VL+DIR+Y+ N DG +   +KG AL+  QW +L+  + DID  +R++
Sbjct:   69 MKYVSVREFKGNVLIDIREYWMNQDGEMKPGRKGIALSPEQWSQLKEQISDIDDAVRKL 127          
BLAST of mRNA_L-elsbetiae_contig90.18014.1 vs. uniprot
Match: UPI001BB2BB0F (activated RNA polymerase II transcriptional coactivator p15-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2BB0F)

HSP 1 Score: 61.6 bits (148), Expect = 4.360e-9
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  364 DMLSSMHLSPVKQVDVRTFKGTVLVDIRQYFKNDDGRISATKKGAALTVPQWRRLQAAMGDIDSKLREI 570
            D  +   LS  + V+VR F+G VL+DIR+Y++ + G +   KKG +LTV QWR+L   + DID+++ E+
Sbjct:   42 DTSNMFSLSRQRFVNVREFRGKVLIDIREYYEPEVGDLRPGKKGISLTVDQWRKLVNQIDDIDARIEEM 110          
BLAST of mRNA_L-elsbetiae_contig90.18014.1 vs. uniprot
Match: A0A4Z2EKN8_9TELE (Activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2EKN8_9TELE)

HSP 1 Score: 61.6 bits (148), Expect = 6.130e-9
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1
Query:  394 VKQVDVRTFKGTVLVDIRQYFKNDDGRISATKKGAALTVPQWRRLQAAMGDIDSKLREI 570
            ++ V VR FKG VLVDIR+Y+ N DG +   KKG +L   QW +L+  M DID  ++ I
Sbjct:   68 MRYVSVREFKGKVLVDIREYWMNQDGEMKPGKKGISLNPEQWTQLKDQMSDIDEAMKRI 126          
BLAST of mRNA_L-elsbetiae_contig90.18014.1 vs. uniprot
Match: G3NII5_GASAC (Activated RNA polymerase II transcriptional coactivator p15 n=3 Tax=Gasterosteidae TaxID=69291 RepID=G3NII5_GASAC)

HSP 1 Score: 61.6 bits (148), Expect = 7.150e-9
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1
Query:  394 VKQVDVRTFKGTVLVDIRQYFKNDDGRISATKKGAALTVPQWRRLQAAMGDIDSKLREI 570
            ++ V VR FKG VL+DIR+Y+ N DG +   KKG +L   QW +L+  M DID  ++ I
Sbjct:   75 MRYVSVRDFKGKVLIDIREYWMNQDGEMKPGKKGISLNPEQWNQLKDQMSDIDDAMKRI 133          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig90.18014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB71_9PHAE6.830e-5154.19PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYS7_ECTSI2.160e-2264.29PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1X7U2Q5_AMPQE3.030e-1049.15PC4 domain-containing protein n=1 Tax=Amphimedon q... [more]
A0A7M7G0M9_STRPU6.380e-1043.48PC4 domain-containing protein n=1 Tax=Strongylocen... [more]
UPI001455409E1.070e-942.42activated RNA polymerase II transcriptional coacti... [more]
A0A1B6KUG9_9HEMI2.570e-937.68PC4 domain-containing protein n=1 Tax=Graphocephal... [more]
A0A8C5L2B5_JACJA3.210e-945.76Activated RNA polymerase II transcriptional coacti... [more]
UPI001BB2BB0F4.360e-942.03activated RNA polymerase II transcriptional coacti... [more]
A0A4Z2EKN8_9TELE6.130e-947.46Activated RNA polymerase II transcriptional coacti... [more]
G3NII5_GASAC7.150e-945.76Activated RNA polymerase II transcriptional coacti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig90contigL-elsbetiae_contig90:42404..42979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score64.3
Seed ortholog evalue7e-08
Seed eggNOG ortholog400682.PAC_15712773
Preferred nameSUB1
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0001205,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003700,GO:0003705,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0060260,GO:0060261,GO:0060395,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000142,GO:2000144,GO:2001141
EggNOG free text desc.Activated RNA polymerase II transcriptional coactivator
EggNOG OGs3A20Q@33154,3BQG5@33208,KOG2712@1,KOG2712@2759
COG Functional cat.K
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionssDNA-binding transcriptional regulator
Ec32 orthologEc-19_002360.1
Exons1
Model size576
Cds size576
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816975.5844069-CDS-L-elsbetiae_contig90:42403..429791622816975.5844069-CDS-L-elsbetiae_contig90:42403..42979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig90 42404..42979 -
1691683954.3878584-CDS-L-elsbetiae_contig90:42403..429791691683954.3878584-CDS-L-elsbetiae_contig90:42403..42979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig90 42404..42979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig90.18014.1prot_L-elsbetiae_contig90.18014.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig90 42404..42979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig90.18014.1

>prot_L-elsbetiae_contig90.18014.1 ID=prot_L-elsbetiae_contig90.18014.1|Name=mRNA_L-elsbetiae_contig90.18014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=192bp
MQRLGWSAKRCGRRNLTHTLSRLSSSSTGSEHDDFWTEAQTEAKTTPAYQ
QAARASSDTPSRFVDGDQWAAPGNFGPGRMPMGQAYGPSTSGDRNNSGPP
PFTPSTNTLDPHQRHLPEPPFDMLSSMHLSPVKQVDVRTFKGTVLVDIRQ
YFKNDDGRISATKKGAALTVPQWRRLQAAMGDIDSKLREIEQ
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mRNA from alignment at L-elsbetiae_contig90:42404..42979-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig90.18014.1 ID=mRNA_L-elsbetiae_contig90.18014.1|Name=mRNA_L-elsbetiae_contig90.18014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig90:42404..42979- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAAGGCTCGGATGGTCAGCAAAACGCTGCGGGCGTCGTAACCTCAC GCACACCTTAAGCCGACTCTCTAGCTCCTCGACGGGCTCAGAGCACGACG ACTTTTGGACAGAAGCTCAAACCGAGGCCAAAACAACACCTGCTTACCAA CAGGCTGCGCGGGCGTCTAGTGACACACCCTCGCGTTTTGTTGACGGGGA TCAATGGGCGGCGCCCGGAAACTTCGGCCCGGGACGGATGCCTATGGGCC AGGCCTATGGCCCGTCCACAAGCGGTGATAGGAACAACAGCGGGCCTCCT CCTTTCACCCCCTCGACCAACACACTTGACCCGCACCAGAGGCATCTACC GGAACCCCCGTTCGACATGCTCAGCTCGATGCACCTTTCACCCGTCAAAC AAGTTGATGTGCGCACGTTCAAGGGCACGGTTTTGGTGGACATCCGACAG TATTTCAAGAACGACGATGGTCGCATCTCGGCGACGAAGAAAGGCGCAGC TCTCACGGTACCTCAGTGGAGGCGGCTGCAGGCAGCGATGGGAGATATCG ACAGCAAGCTTAGAGAGATAGAACAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig90:42404..42979-

>mRNA_L-elsbetiae_contig90.18014.1 ID=mRNA_L-elsbetiae_contig90.18014.1|Name=mRNA_L-elsbetiae_contig90.18014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1152bp|location=Sequence derived from alignment at L-elsbetiae_contig90:42404..42979- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAAGGCTCGGATGGTCAGCAAAACGCTGCGGGCGTCGTAACCTCAC
GCACACCTTAAGCCGACTCTCTAGCTCCTCGACGGGCTCAGAGCACGACG
ACTTTTGGACAGAAGCTCAAACCGAGGCCAAAACAACACCTGCTTACCAA
CAGGCTGCGCGGGCGTCTAGTGACACACCCTCGCGTTTTGTTGACGGGGA
TCAATGGGCGGCGCCCGGAAACTTCGGCCCGGGACGGATGCCTATGGGCC
AGGCCTATGGCCCGTCCACAAGCGGTGATAGGAACAACAGCGGGCCTCCT
CCTTTCACCCCCTCGACCAACACACTTGACCCGCACCAGAGGCATCTACC
GGAACCCCCGTTCGACATGCTCAGCTCGATGCACCTTTCACCCGTCAAAC
AAGTTGATGTGCGCACGTTCAAGGGCACGGTTTTGGTGGACATCCGACAG
TATTTCAAGAACGACGATGGTCGCATCTCGGCGACGAAGAAAGGCGCAGC
TCTCACGGTACCTCAGTGGAGGCGGCTGCAGGCAGCGATGGGAGATATCG
ACAGCAAGCTTAGAGAGATAGAACAAATGCAAAGGCTCGGATGGTCAGCA
AAACGCTGCGGGCGTCGTAACCTCACGCACACCTTAAGCCGACTCTCTAG
CTCCTCGACGGGCTCAGAGCACGACGACTTTTGGACAGAAGCTCAAACCG
AGGCCAAAACAACACCTGCTTACCAACAGGCTGCGCGGGCGTCTAGTGAC
ACACCCTCGCGTTTTGTTGACGGGGATCAATGGGCGGCGCCCGGAAACTT
CGGCCCGGGACGGATGCCTATGGGCCAGGCCTATGGCCCGTCCACAAGCG
GTGATAGGAACAACAGCGGGCCTCCTCCTTTCACCCCCTCGACCAACACA
CTTGACCCGCACCAGAGGCATCTACCGGAACCCCCGTTCGACATGCTCAG
CTCGATGCACCTTTCACCCGTCAAACAAGTTGATGTGCGCACGTTCAAGG
GCACGGTTTTGGTGGACATCCGACAGTATTTCAAGAACGACGATGGTCGC
ATCTCGGCGACGAAGAAAGGCGCAGCTCTCACGGTACCTCAGTGGAGGCG
GCTGCAGGCAGCGATGGGAGATATCGACAGCAAGCTTAGAGAGATAGAAC
AA
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