mRNA_L-elsbetiae_contig8865.17886.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8865.17886.1 vs. uniprot
Match: D8LJJ2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ2_ECTSI) HSP 1 Score: 354 bits (908), Expect = 7.140e-113 Identity = 207/287 (72.13%), Postives = 224/287 (78.05%), Query Frame = 1
Query: 1 RFHALGRDSHAAIEAEGQARNESVRRRKQEREDALLAKLREQSKCKVNWNFSEEELERGKKMIAKAASTYDKARLGADIDRIAQMKMDPTAFRAQLLQNFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMGREERAKNLAEAERQRLRADKKELRFRRRLEDRFIEQTAAKARRRSKGSSTNVVWPSLAYDPYEDDYSMDDH----GTSSHTPGNSVGGSATAGRVGG------GDAMEKPGGAPSRRGRPKISASTAEFLAQIRKEEMAIRTMASHGRQR 831
RFH L RDSHAA AEGQARNE+ RRR +E+E+ALL KLREQSKCKVNW+FSE+EL+RG KMIA AASTYDKARLGADI+RIAQMKMDPTAFRAQLL NFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMGREERAKNLAEAERQR RAD KE FR+RLEDRFIEQTAAK VVWP L YDP++DDY+MDDH S T SVG + + GR GD +P + RR RPKISASTAEFLAQIRKEEM IR M GR+R
Sbjct: 199 RFHTLARDSHAAKVAEGQARNETARRRNREQEEALLTKLREQSKCKVNWSFSEDELKRGLKMIAVAASTYDKARLGADINRIAQMKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMGREERAKNLAEAERQRHRADLKEKNFRQRLEDRFIEQTAAK-----------VVWPRLMYDPFDDDYNMDDHDPATSVGSTTLSKSVGDNKSRGRSNNDNNNEPGDVSREP--SARRRRRPKISASTAEFLAQIRKEEMTIRAMTCRGRRR 472
BLAST of mRNA_L-elsbetiae_contig8865.17886.1 vs. uniprot
Match: A0A6H5KBB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB4_9PHAE) HSP 1 Score: 214 bits (546), Expect = 4.530e-62 Identity = 137/220 (62.27%), Postives = 148/220 (67.27%), Query Frame = 1
Query: 253 MKMDPTAFRAQLLQNFRVRLGPGELGAVFTAFDKDNSKLIDGTE-----------------LMHEFFRMGREERAKNLAEAERQRLRADKKELRFRRRLEDRFIEQTAAKARRRSKGSSTNVVWPSLAYDPYEDDYSMDDHGTS----SHTPGNSVGGSATAGRVGG------GDAMEKPGGAPSRRGRPKISASTAEFLAQIRKEEMAIRTMASHGRQR 831
MKMDPTAFRAQLL NFRVRLGPGELGAVFTAFDKDNSKLIDGTE LMHEFFRMGREERAKNLAEAERQR RAD KE FRRRLEDRFIEQTAAK V WP L YDP+++DY+MDDH + S + SVG + + G GD +P + RR RPKISASTAEFLAQIRKEEM IR M GR+R
Sbjct: 1 MKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTETFTLAADTYTREHARTKLMHEFFRMGREERAKNLAEAERQRHRADTKEKNFRRRLEDRFIEQTAAK-----------VEWPRLMYDPFDEDYNMDDHDPATSVRSTSLSKSVGDNKSRGSSNNDNNNETGDVSREP--SARRRRRPKISASTAEFLAQIRKEEMTIRAMTCRGRRR 207
BLAST of mRNA_L-elsbetiae_contig8865.17886.1 vs. uniprot
Match: A0A835YPN5_9STRA (EF-hand domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN5_9STRA) HSP 1 Score: 107 bits (267), Expect = 3.050e-21 Identity = 89/279 (31.90%), Postives = 134/279 (48.03%), Query Frame = 1
Query: 4 FHALGRDSHAAIEAEGQARNESVRRRKQEREDALLAKLREQSKCKVNWNFSEEELERGKKMIAKAASTYDKARLGADIDRIAQMKMDPTAFRAQLLQNFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMGREERAKNLAEAERQRLRADKKELRFRRRLEDRFIEQTAAKARRRSKGSSTNVVWPSLAYDPYED--DYSMDDHGTSSHTPGNSVGGSATAGRVGGGDAMEKPGGAPSRRGR--------PKISASTAEFLAQIRKEEMAIRTM 810
F LGR A + ++E++R +D ++++L +VNW+ S+ +AK A+ YD+ R + + MD T F QL Q F +RL ELGA+F FD D +DG E ++ FF++GREERAK LAEAER R R + K RF L+ R + ++ AK V WP + +DPY + +D + +P + A G G+A P +P R R P ++ +TA FL Q+ E +I+ M
Sbjct: 307 FTQLGRHERYAQLQRQRRQDEALRXXXXRHQDEVVSRLGALVAARVNWSPSDAARATALNKVAKEAAHYDRDR-SIGLQNMLSGSMDVTGFNTQLRQGFGIRLSSAELGALFKVFDLDGGGTVDGAEFLNAFFKLGREERAKQLAEAERTRQRMEDKRRRFNESLQTRLVLRSTAK-----------VEWPIMEFDPYSTRAESMIDSARSEDESPLD-----AALNAAGVGNARSSP--SPDNRHRSSAVAPALPPVTEATAAFLHQLDIVERSIKKM 566 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8865.17886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8865.17886.1 >prot_L-elsbetiae_contig8865.17886.1 ID=prot_L-elsbetiae_contig8865.17886.1|Name=mRNA_L-elsbetiae_contig8865.17886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=425bp RFHALGRDSHAAIEAEGQARNESVRRRKQEREDALLAKLREQSKCKVNWNback to top mRNA from alignment at L-elsbetiae_contig8865:2267..7912- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8865.17886.1 ID=mRNA_L-elsbetiae_contig8865.17886.1|Name=mRNA_L-elsbetiae_contig8865.17886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5646bp|location=Sequence derived from alignment at L-elsbetiae_contig8865:2267..7912- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8865:2267..7912- >mRNA_L-elsbetiae_contig8865.17886.1 ID=mRNA_L-elsbetiae_contig8865.17886.1|Name=mRNA_L-elsbetiae_contig8865.17886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2550bp|location=Sequence derived from alignment at L-elsbetiae_contig8865:2267..7912- (Laminarionema elsbetiae ELsaHSoW15)back to top |