mRNA_L-elsbetiae_contig8860.17882.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8860.17882.1
Unique NamemRNA_L-elsbetiae_contig8860.17882.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8860.17882.1 vs. uniprot
Match: A0A6H5K0G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.780e-10
Identity = 51/89 (57.30%), Postives = 56/89 (62.92%), Query Frame = 3 
Query:   90 MAPSKKKAKTP-RAADAGTASGAGAPG---SSLGTKRGTSKPVIQQQ-NADHIKTATAPVAPAVSSRPKRNAEKKKYDDSEDERPQHLS 341
            MAPSKKK KTP +AAD+ TA          S   + R   KP  Q Q +ADH K AT      VS RPKRNAEKKKYDDSED+RPQHLS
Sbjct:    1 MAPSKKKPKTPSKAADSSTAXXXXXXXXXXSQATSSRVAPKPGQQAQLSADHAKAAT------VSLRPKRNAEKKKYDDSEDDRPQHLS 83
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BLAST of mRNA_L-elsbetiae_contig8860.17882.1 vs. uniprot
Match: D8LD54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD54_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 9.120e-8
Identity = 48/89 (53.93%), Postives = 52/89 (58.43%), Query Frame = 3 
Query:   90 MAPSKKKAKTP-RAADAGTASGAGAPGSSLGTK---RGTSKPVIQQQ-NADHIKTATAPVAPAVSSRPKRNAEKKKYDDSEDERPQHLS 341
            MAPSKKK KT  +AAD+                   R   KP  Q Q +ADH K A      AVSSRPKRNAEKKKYDDSED+RPQHLS
Sbjct:    1 MAPSKKKPKTSSKAADSXXXXXXXXXXXXXXXXXXXRAAPKPGQQAQLSADHNKAA------AVSSRPKRNAEKKKYDDSEDDRPQHLS 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8860.17882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0G2_9PHAE9.780e-1057.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD54_ECTSI9.120e-853.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8860contigL-elsbetiae_contig8860:963..4475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size516
Cds size426
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8860.17882.1prot_L-elsbetiae_contig8860.17882.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8860 963..4092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816963.4171402-CDS-L-elsbetiae_contig8860:962..11111622816963.4171402-CDS-L-elsbetiae_contig8860:962..1111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8860 963..1111 -
1691683945.4387429-CDS-L-elsbetiae_contig8860:962..11111691683945.4387429-CDS-L-elsbetiae_contig8860:962..1111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8860 963..1111 -
1622816963.427669-CDS-L-elsbetiae_contig8860:3815..40921622816963.427669-CDS-L-elsbetiae_contig8860:3815..4092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8860 3816..4092 -
1691683945.4496872-CDS-L-elsbetiae_contig8860:3815..40921691683945.4496872-CDS-L-elsbetiae_contig8860:3815..4092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8860 3816..4092 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816963.437931-UTR-L-elsbetiae_contig8860:4092..41171622816963.437931-UTR-L-elsbetiae_contig8860:4092..4117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8860 4093..4117 -
1691683945.459288-UTR-L-elsbetiae_contig8860:4092..41171691683945.459288-UTR-L-elsbetiae_contig8860:4092..4117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8860 4093..4117 -
1622816963.448075-UTR-L-elsbetiae_contig8860:4411..44751622816963.448075-UTR-L-elsbetiae_contig8860:4411..4475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8860 4412..4475 -
1691683945.4776957-UTR-L-elsbetiae_contig8860:4411..44751691683945.4776957-UTR-L-elsbetiae_contig8860:4411..4475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8860 4412..4475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8860.17882.1

>prot_L-elsbetiae_contig8860.17882.1 ID=prot_L-elsbetiae_contig8860.17882.1|Name=mRNA_L-elsbetiae_contig8860.17882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
MAPSKKKAKTPRAADAGTASGAGAPGSSLGTKRGTSKPVIQQQNADHIKT
ATAPVAPAVSSRPKRNAEKKKYDDSEDERPQHLSTRRPKKKKDAAAAASS
SDEDEGYRSEDDGGSHRKASPTGSRKAASATGGGKQAAAAAA
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mRNA from alignment at L-elsbetiae_contig8860:963..4475-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8860.17882.1 ID=mRNA_L-elsbetiae_contig8860.17882.1|Name=mRNA_L-elsbetiae_contig8860.17882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3513bp|location=Sequence derived from alignment at L-elsbetiae_contig8860:963..4475- (Laminarionema elsbetiae ELsaHSoW15)
GCAGGAACACCGTCCCATAAGAACACTCGACGTCGTCCCTGAAGGAGATT
GCGGTGGTTCTCAGGTATTAGGCTTTGGCTGCCCCGTCTTTGAACGGGCT
CGTGTGTGCCCGGCGTGTGCGTGTACAAGGATATCGATCGACAACTTTTG
GGTGTGTCGTCTTCCCTAGACTGGGGACATGCCGCAAAGGTCGTAGCTAT
CCTCGCGGTATCGCGTGCGTCCCGATGGTAGCTCCATTCCAGATCTATCT
TTTTTTTTGTGTGGGTGCAGTCGTTGATCGGAAGGCAGGATCACGTCAAA
CTCAAACCAAACCGCCCTCCTTCGCTCTCTTGTCTTCCCTTCTCCGCTCC
CGAGACAGGTGAAAACCAAACCATCTCTTAGGTATGGCCCCTTCCAAGAA
AAAGGCGAAGACACCGAGGGCGGCGGACGCCGGCACTGCTTCAGGTGCTG
GTGCGCCCGGTAGTTCCTTGGGCACGAAACGCGGCACCTCCAAGCCCGTC
ATCCAGCAACAGAACGCCGACCACATCAAGACAGCAACAGCACCGGTTGC
GCCCGCCGTGTCTTCGCGTCCCAAAAGAAACGCCGAGAAGAAGAAGTACG
ATGACAGCGAGGATGAACGACCGCAGCACCTCAGCACGAGACGCCCCAAG
AAGAAGAAGGGTGAGTGTGTCGATTGGATGTGCCCGCATCGACTCTACTG
CTACTGTATCTGTTTTGATCTGCACTACTGGAGATGTCACAGAAATGCGG
TTGGTGGCGTGCGTTGCGCCGCCTTCAGAAATCATACCGCGTTTGGGCTC
TGCAACACACCCTAGCCCTCGTCATCTAGCAGATTTTTGAGACCCACAGC
GTGGTTGTACAGCTGGCATGAGTGTCGTCGCCTTGCCCCAGCTGGAGGTG
CTTTCAACCTCGTATTGGCCGAAAAAAAACAAAAACAGAACTACTCGGTT
GCTTTTCGGAAAGAGTTGGCGTGGATCTCCCGCCGTCTCTTATATCTGTC
CGGAAATACACAAGACACATGCAATATGAGGTGCTCTACAAAGTTGTTTT
CAGGTGAAGCACACTTGAACATACAGAGGCTGCGCCCCACCAAAACCAGA
CCCAAAGCTCCGGACCCACAACAAAATCAGTTTTGCCCTCTCTCTCCTCT
CTCTCACTCACCACAGGGCCAGCTCCGAAAAAAATCACGAAAACAAAGTA
CCCAACGAGAGAAAACAAAAAATCTGACTGATCCTCTCTACTCTAGTCTA
CACGAGACACACGTTTGCTGGCACACACGCACACACCCTCTCGCTCTGTT
CTGTCCGACAACTCGCGGGAGTATATGGGGCGATGCATCCAAGCATGACA
TCAAGGCCCGATTGGGTGGTGTACCACCGAACCTTGTCTTGTTCTGTGTA
TGTACCACGAAATGCACGCGTGCACATGACCCACAAATATTTTAGGGATG
GACAACGTGTGTACTTGAAGTTTCGGGGCATATACTTTTGGTTCTGACCA
TTCTTCTTTGAAGGCTGTACAATAAGGACACGTGTATGGCATCGCGGGTT
CTAGGGGGGTCGGGACCCGTTCGGCTGTCTCTATCCCCATTTTCTTGAAG
GGGAGCATCCTGGCTATCTTCGCCGTGTCTGCTGTTTTGGCTGGTTTGCA
AGGCGTGTGTGCTTTTTTTCAACCAGCAAAACCCGGCCAGGTCGACTGAA
AATTGGGCGTGTTGAGACGTTTGAAAACACAAAGTTCTCCAGATCGAAAG
CTACTCTGTGTGCATCGCTCCTGCTGTGCTCAGACTATATTCCTCCAAGG
GTGTCGTAAGAGGCGCTCAGCCCAAGACCCCGTCTCCAAAGACCCCGAGC
GCTCCATGGCCGACCCTCGCTGCTGTCTACCCCAAGCGTGCGCGCCCTGA
CTTTCGCCGACACACGAAAGCGAAGTTTGCTCGGTGCAAAGTTGCACTCA
TTCAGTCGACCCTTCCGCATATTGGTCTCTGCTCTTCTACCAGCAGTAAG
AGCTGCCTCACGACAGCCAACCCCAAGGATTGACTTGTGACATTTTGGTA
TCGGTTCTCCTTCCAAAGCGCACACGTCGTTTTTTTCGCGGTGAGATATC
GCAGCTGGAGAGAGATCTACGGCATTTTCTGTGGGAAATGACAGAAAACC
ACCATTATTGAGAAAACAATTGTCGCTTCGGGCTCTCTCCTGGAATCCCT
CCCCGGGATTTCAAAGCAGGAAAACGTGGTGCCTCATGAGCGCAATTTTT
GAGACACGCGCAACTCTTTCGTTCGGCAGCACACGCACGCCCCCCCCCCC
CCCCCCCCCCCGCCCCCCCAGAGCCCGGCGCAACCGGCCCCCTCAAACTA
TTTTTTTTCTCAAAACAGGAGGTGTCATTCTGACCNNNNNNNNNNTTTCA
AAAGAAGAAAAAGGCGGGCCTCATGGGCAGAGTTTTTTGTACCCCCGGCC
CCTTTTCTTTCCGGCGCCAACCCCCCCCCCCCCCCCCCCCCCCTGTTCGA
CGACAAGGTGAATTGTCAATCGGTGCTCTATAAATATTTTTTTGACTAAA
AAGGAGGATCATTGTCGTCACTCGTGTTCAACTTTGGAGGGGGGCGCTAG
AAGTTACCCGATCGGAGAAACATTTGCCCGATGTTCCCCTTCCGGGATGA
GGGAAAAAAACTCGCTGCTCCACGGCTCATCCTTAAGACGACATTGGAAA
CTTGTGCTATGTATTCATCACAGGAAAATAATCTATGCAACGGCGTGTCG
CCGTGGTTGCCCCCCGACATGTAGGCTAGAAGCTACTACAAGTTTCCCCC
ATGGCACATTGAGGGAGGTCGCGTCTCCCAACAATTTTGCTGGTGCTGTA
AACCGGCACCACAGGACAGCAGTATCGTACATAGAAAGGGCAGAGCGGGG
TCTTTTGGTCTGAGCGGAGGACAGCACCGATGACCCGTACAATGTGGTCA
CGTGTAGTTGCTATTGTATCGATACGCACGATTGAATTGAGGGTCAGCCC
TGCCGGCTGTCGTTGCATGCGCGTGTGGACATGCTGCACCAGCGATGGAA
AGCGTTCGTAGTTTTACCTGGTTGTTGCCAACACTTTCGTTGCGCAACTT
CATCCTGCATCTGATGTGTATCTGGAGTTTCCCGTGTTGTTCCGCACGTA
TGTACTAGCAGCTCTTGTTTGGCGTTCTACATATCACGGTGCCTCGCTTC
CGTTTGTGACGCGTTTGGCAGCGACCGCAGCAGCGGTTTTCGGTAGATGC
ATGCATCGTCGTCGCGAGCTAGCTGAGCCATGTGCACGTACGCGGCCACC
TTACACGGCACCCCCTCCCTACCCCCACCCCCCTCGTCCGTCGATCATCT
CGTTCGTTCCGCAGACGCAGCCGCCGCGGCGTCCAGCAGCGACGAGGACG
AAGGCTACCGCAGTGAGGACGACGGCGGCAGCCACCGCAAGGCGAGCCCG
ACCGGGTCTCGCAAGGCCGCAAGTGCAACTGGCGGCGGGAAGCAGGCGGC
GGCGGCGGCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8860:963..4475-

>mRNA_L-elsbetiae_contig8860.17882.1 ID=mRNA_L-elsbetiae_contig8860.17882.1|Name=mRNA_L-elsbetiae_contig8860.17882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig8860:963..4475- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCCTTCCAAGAAAAAGGCGAAGACACCGAGGGCGGCGGACGCCGG
CACTGCTTCAGGTGCTGGTGCGCCCGGTAGTTCCTTGGGCACGAAACGCG
GCACCTCCAAGCCCGTCATCCAGCAACAGAACGCCGACCACATCAAGACA
GCAACAGCACCGGTTGCGCCCGCCGTGTCTTCGCGTCCCAAAAGAAACGC
CGAGAAGAAGAAGTACGATGACAGCGAGGATGAACGACCGCAGCACCTCA
GCACGAGACGCCCCAAGAAGAAGAAGGATGGCCCCTTCCAAGAAAAAGGC
GAAGACACCGAGGGCGGCGGACGCCGGCACTGCTTCAGGTGCTGGTGCGC
CCGGTAGTTCCTTGGGCACGAAACGCGGCACCTCCAAGCCCGTCATCCAG
CAACAGAACGCCGACCACATCAAGACAGCAACAGCACCGGTTGCGCCCGC
CGTGTCTTCGCGTCCCAAAAGAAACGCCGAGAAGAAGAAGTACGATGACA
GCGAGGATGAACGACCGCAGCACCTCAGCACGAGACGCCCCAAGAAGAAG
AAGGACGCAGCCGCCGCGGCGTCCAGCAGCGACGAGGACGAAGGCTACCG
CAGTGAGGACGACGGCGGCAGCCACCGCAAGGCGAGCCCGACCGGGTCTC
GCAAGGCCGCAAGTGCAACTGGCGGCGGGAAGCAGGCGGCGGCGGCGGCG
GCGACGCAGCCGCCGCGGCGTCCAGCAGCGACGAGGACGAAGGCTACCGC
AGTGAGGACGACGGCGGCAGCCACCGCAAGGCGAGCCCGACCGGGTCTCG
CAAGGCCGCAAGTGCAACTGGCGGCGGGAAGCAGGCGGCGGCGGCGGCGG
CG
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