mRNA_L-elsbetiae_contig883.17860.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig883.17860.1
Unique NamemRNA_L-elsbetiae_contig883.17860.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig883.17860.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 7.210e-8
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 2 
Query:    2 MPSVEVKKPKKSRFGGMFGGSKAKIEVPEVPEVDATLPEVS 124
            +PSVEV+KPKK  FGG+FG SKAKIEV   P+VDAT+PEVS
Sbjct: 4381 VPSVEVEKPKKGLFGGLFGSSKAKIEV---PDVDATVPEVS 4418
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BLAST of mRNA_L-elsbetiae_contig883.17860.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.620e-6
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 2 
Query:    2 MPSVEVKKPKKSRFGGMFGGSKAKIEVPEVPEVDATLPEVS 124
            +PSVEVKKPKK  FGG+FG SKAKIEV   P+ D ++P+V+
Sbjct: 2033 VPSVEVKKPKKGLFGGLFGSSKAKIEV---PDADVSVPDVA 2070
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig883.17860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB94_ECTSI7.210e-873.17Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
A0A6H5K9M1_9PHAE5.620e-663.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig883contigL-elsbetiae_contig883:18050..18592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue7.3e-07
Seed eggNOG ortholog2880.D8LB94
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axon ensheathment
EggNOG OGs28M73@1,2QTQ3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size316
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig883.17860.1prot_L-elsbetiae_contig883.17860.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig883 18050..18591 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816961.3342674-CDS-L-elsbetiae_contig883:18049..182861622816961.3342674-CDS-L-elsbetiae_contig883:18049..18286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig883 18050..18286 -
1691683943.6842582-CDS-L-elsbetiae_contig883:18049..182861691683943.6842582-CDS-L-elsbetiae_contig883:18049..18286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig883 18050..18286 -
1622816961.3447456-CDS-L-elsbetiae_contig883:18513..185911622816961.3447456-CDS-L-elsbetiae_contig883:18513..18591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig883 18514..18591 -
1691683943.6984224-CDS-L-elsbetiae_contig883:18513..185911691683943.6984224-CDS-L-elsbetiae_contig883:18513..18591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig883 18514..18591 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816961.3570833-UTR-L-elsbetiae_contig883:18591..185921622816961.3570833-UTR-L-elsbetiae_contig883:18591..18592Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig883 18592..18592 -
1691683943.7094214-UTR-L-elsbetiae_contig883:18591..185921691683943.7094214-UTR-L-elsbetiae_contig883:18591..18592Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig883 18592..18592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig883.17860.1

>prot_L-elsbetiae_contig883.17860.1 ID=prot_L-elsbetiae_contig883.17860.1|Name=mRNA_L-elsbetiae_contig883.17860.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MPSVEVKKPKKSRFGGMFGGSKAKIEVPEVPEVDATLPEVSGDASLPEVS
ADVSMPDVSAPDVSGSLPEVSGDVSVPDASGTVDVEGAVPSMDVSGKYML
PWSI*
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mRNA from alignment at L-elsbetiae_contig883:18050..18592-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig883.17860.1 ID=mRNA_L-elsbetiae_contig883.17860.1|Name=mRNA_L-elsbetiae_contig883.17860.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=543bp|location=Sequence derived from alignment at L-elsbetiae_contig883:18050..18592- (Laminarionema elsbetiae ELsaHSoW15)
CATGCCGTCTGTGGAGGTGAAGAAGCCCAAGAAGAGCCGGTTCGGTGGCA
TGTTCGGCGGCTCCAAGGCCAAGATCGAGGTAAGAAGTACCTTCACGAGT
GGTGTACATGAAATATATTCAGCCTCTGATTCTGGCGCATGAAATTATCT
GGTCTGATAGTTTCGTCGGAAGGTTCGATAAGTGATAATAAGTTATATAT
AGTCTTGTGTTGAAACCTTTGCTCTTTAGTTCGAGTGAAGTCCGCTGAGG
ATGTCCCGGTGTCCATCTTTTCGCTGCGAATGGTTGTTTCACTCGTCTCA
CCCAAGGTCCCGGAGGTCCCCGAGGTCGATGCTACTTTGCCCGAGGTCTC
TGGAGACGCTTCTCTGCCTGAGGTTTCAGCCGATGTGTCGATGCCGGACG
TGTCTGCGCCGGACGTGAGTGGCTCGCTGCCCGAAGTGAGCGGAGATGTG
TCCGTGCCTGACGCGAGCGGAACCGTCGACGTGGAGGGAGCTGTGCCGTC
GATGGACGTTTCCGGTAAGTATATGTTACCTTGGTCGATCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig883:18050..18592-

>mRNA_L-elsbetiae_contig883.17860.1 ID=mRNA_L-elsbetiae_contig883.17860.1|Name=mRNA_L-elsbetiae_contig883.17860.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig883:18050..18592- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTCTGTGGAGGTGAAGAAGCCCAAGAAGAGCCGGTTCGGTGGCAT
GTTCGGCGGCTCCAAGGCCAAGATCGAGATGCCGTCTGTGGAGGTGAAGA
AGCCCAAGAAGAGCCGGTTCGGTGGCATGTTCGGCGGCTCCAAGGCCAAG
ATCGAGGTCCCGGAGGTCCCCGAGGTCGATGCTACTTTGCCCGAGGTCTC
TGGAGACGCTTCTCTGCCTGAGGTTTCAGCCGATGTGTCGATGCCGGACG
TGTCTGCGCCGGACGTGAGTGGCTCGCTGCCCGAAGTGAGCGGAGATGTG
TCCGTGCCTGACGCGAGCGGAACCGTCGACGTGGAGGGAGCTGTGCCGTC
GATGGACGTTTCCGGTAAGTATATGTTACCTTGGTCGATCTAAGTCCCGG
AGGTCCCCGAGGTCGATGCTACTTTGCCCGAGGTCTCTGGAGACGCTTCT
CTGCCTGAGGTTTCAGCCGATGTGTCGATGCCGGACGTGTCTGCGCCGGA
CGTGAGTGGCTCGCTGCCCGAAGTGAGCGGAGATGTGTCCGTGCCTGACG
CGAGCGGAACCGTCGACGTGGAGGGAGCTGTGCCGTCGATGGACGTTTCC
GGTAAGTATATGTTACCTTGGTCGATCTAA
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