mRNA_L-elsbetiae_contig8803.17836.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8803.17836.1
Unique NamemRNA_L-elsbetiae_contig8803.17836.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8803.17836.1 vs. uniprot
Match: D7FJA4_ECTSI (Thioredoxin/AMP-activated kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA4_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 4.080e-38
Identity = 97/184 (52.72%), Postives = 122/184 (66.30%), Query Frame = 2 
Query:  158 MQRASSIAT--VRLAPRAGSVVSTPPTGGSRSSPVPLLAPGVYKLPPPTALWCSREITGGASAVQTVASEAELAQLLTSTKPNSLVVLNFCTALSKASNAAEAKFEKTASKFGECGGGMGVHFAKVNFESNHQLFEKMGIRSVPHVQIFSGDSGKVADFSLTNLRNNTLDYLLSDRRESMLAWQ 703
            MQ ASS+AT   RLAPR  SV+ + P    +   +P   PG Y   P TALW     +G  S++QTV  E ELAQLL +T+P+SLVV+ F  AL KAS A E KF++TA++F EC     V FA V+  SN  L +KMG+RSVPHVQIFSG +GK+ADFSL     +TLD LL +RR+SMLAW+
Sbjct:    1 MQLASSVATRAARLAPR--SVIPSTPKPAPK---IPGHLPGAYN--PSTALW--HHDSGETSSIQTVRDETELAQLLDATRPSSLVVVKFGKALCKASKAVEEKFKQTAAEFSECDK-TDVQFASVDSGSNWLLCKKMGVRSVPHVQIFSGYNGKIADFSLAPPEYDTLDALLGERRDSMLAWK 174
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BLAST of mRNA_L-elsbetiae_contig8803.17836.1 vs. uniprot
Match: D7G5S5_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5S5_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.510e-22
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 2 
Query:  338 AVQTVASEAELAQLLTSTKPNSLVVLNFCTALSKASNAAEAKFEKTASKFGECGGGMGVHFAKVNFESNHQLFEKMGIRSVPHVQIFSGDSGKVADFSLTNLRNNTLDYLLSDRRESMLA 697
            A +TV +EAEL +LL S   + LVV+ F   L  AS A E +F +TA++FG+      V FA V F+SN QL ++MGI+SVPHVQIFSG  GK+ADFS+  L+ NTL  LLS+RR+S+ A
Sbjct:   85 APKTVKNEAELTKLLAS---DGLVVVKFHAILCDASRAVEGRFRQTAAEFGDMDNKQ-VTFADVCFDSNRQLCKRMGIKSVPHVQIFSGSKGKIADFSIAPLQYNTLTSLLSERRDSVAA 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8803.17836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJA4_ECTSI4.080e-3852.72Thioredoxin/AMP-activated kinase n=1 Tax=Ectocarpu... [more]
D7G5S5_ECTSI2.510e-2252.50Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8803contigL-elsbetiae_contig8803:1510..4792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue6.9e-21
Seed eggNOG ortholog2880.D7G5S5
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Thioredoxin
EggNOG OGs2D09X@1,2SDCR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-12_008280.1
Exons4
Model size1464
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8803.17836.1prot_L-elsbetiae_contig8803.17836.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8803 1858..4034 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816959.332233-UTR-L-elsbetiae_contig8803:1509..16231622816959.332233-UTR-L-elsbetiae_contig8803:1509..1623Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8803 1510..1623 +
1691683942.1892643-UTR-L-elsbetiae_contig8803:1509..16231691683942.1892643-UTR-L-elsbetiae_contig8803:1509..1623Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8803 1510..1623 +
1622816959.343292-UTR-L-elsbetiae_contig8803:1814..18571622816959.343292-UTR-L-elsbetiae_contig8803:1814..1857Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8803 1815..1857 +
1691683942.201489-UTR-L-elsbetiae_contig8803:1814..18571691683942.201489-UTR-L-elsbetiae_contig8803:1814..1857Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8803 1815..1857 +
1622816959.3895812-UTR-L-elsbetiae_contig8803:4034..47921622816959.3895812-UTR-L-elsbetiae_contig8803:4034..4792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8803 4035..4792 +
1691683942.2454963-UTR-L-elsbetiae_contig8803:4034..47921691683942.2454963-UTR-L-elsbetiae_contig8803:4034..4792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8803 4035..4792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816959.3543718-CDS-L-elsbetiae_contig8803:1857..20461622816959.3543718-CDS-L-elsbetiae_contig8803:1857..2046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8803 1858..2046 +
1691683942.2127583-CDS-L-elsbetiae_contig8803:1857..20461691683942.2127583-CDS-L-elsbetiae_contig8803:1857..2046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8803 1858..2046 +
1622816959.365487-CDS-L-elsbetiae_contig8803:3157..34031622816959.365487-CDS-L-elsbetiae_contig8803:3157..3403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8803 3158..3403 +
1691683942.2235923-CDS-L-elsbetiae_contig8803:3157..34031691683942.2235923-CDS-L-elsbetiae_contig8803:3157..3403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8803 3158..3403 +
1622816959.3787477-CDS-L-elsbetiae_contig8803:3920..40341622816959.3787477-CDS-L-elsbetiae_contig8803:3920..4034Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8803 3921..4034 +
1691683942.234983-CDS-L-elsbetiae_contig8803:3920..40341691683942.234983-CDS-L-elsbetiae_contig8803:3920..4034Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8803 3921..4034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8803.17836.1

>prot_L-elsbetiae_contig8803.17836.1 ID=prot_L-elsbetiae_contig8803.17836.1|Name=mRNA_L-elsbetiae_contig8803.17836.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
MQRASSIATVRLAPRAGSVVSTPPTGGSRSSPVPLLAPGVYKLPPPTALW
CSREITGGASAVQTVASEAELAQLLTSTKPNSLVVLNFCTALSKASNAAE
AKFEKTASKFGECGGGMGVHFAKVNFESNHQLFEKMGIRSVPHVQIFSGD
SGKVADFSLTNLRNNTLDYLLSDRRESMLAWQ*
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mRNA from alignment at L-elsbetiae_contig8803:1510..4792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8803.17836.1 ID=mRNA_L-elsbetiae_contig8803.17836.1|Name=mRNA_L-elsbetiae_contig8803.17836.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3283bp|location=Sequence derived from alignment at L-elsbetiae_contig8803:1510..4792+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCGCGCACCAATCCACAATCCATTTCGTCGCGCACTTTACCTCTCCC
TGTGCAACAAACAAATAATCCTACTCCGGTCGTTGGGGGTGTGCGCGCGA
TTGTATCGGGGAAGGTGAGAGCAGACGAGCACAGAGACGCTCTATGAGAC
TCATCTATAGATATAAAAGTGATCGGCGTGAGAAGGTAACGAGTTTGTCT
CGGGTATCGTATATACATGCGTTGTGCTCGTAGCGGCTGGTCATTCATTG
AACGACGGCTTAACCGTTGGCAGTGTATTTACTGGCCCTGTCCTTCGAAC
CGCAGGAAGCAAGCACCCTCGCCAGTCTTCGCCACCAATCACATCGGCAT
GCAGCGCGCATCTTCAATTGCCACGGTTCGCCTCGCCCCTCGGGCGGGCA
GTGTCGTATCCACGCCTCCAACTGGCGGATCTCGTTCCTCCCCGGTCCCT
CTGCTTGCGCCTGGGGTGTACAAGCTTCCACCACCGACCGCGCTCTGGTG
CAGCAGAGAAATTACAGGAGGCGCCTCTGCGGTTCAGGTGAGATAAATTC
CTGCTGGCCGGCTGAAGGTTTTGTCCATCACCTACTAGTCTACTTCCTGT
ATCTATATCTAGATACACCCTATGGAAATTTTACTCAACGATGTAAGTTA
CATATTGACTGATCTAGCATGTGTGTACCAGTAGATACACCTTACAAAAT
CCTAAAATGGTTTCACCGCGGCGAGTCTAGATGGCCATATGGCGACAATT
TGGCGACAGGCCTGGTACCAACGCTTGTCCCCCTAGAGGGAGAACTTCTG
TGTAGCCAAGGCCTAGAAAAAAGTTTGTCTTGGCTTTCAGTATAGAAAGT
GTCGCCAAAAGTTTGATTTGGCTTTCAGTACGGAAACTAACTGTCGCCAT
TTCTTTAGTTTTCGATTTTCTCTCTGTGTGCACGGAACCTTGTGTAACCA
TGGTTTACGTTCCCATGGTTTACGTTCCTCTTGCATCTGTGGGATAGCGA
TGCACCCTCTTGTTTCACCCCAGACACTCTGCTGGCGGGTCTGGCAAGCC
CGGCAAGAATGCGGGGCCCGCAGATGGGTTCTGGGAGGGACCGTGGCTCT
TTAGCCAATCACAGGCGGCCAGATTTTTTATTTTTTTTAAACTGGGCGTT
TCATTGTGTATATATGTATGATATAGACGCTCGTACATGTATCTTTGTAG
AAAACTACAAATGCCGCAAAAGGGCGCCTATATCCCACCCGATCCTTGAC
GATGGAGAAATGTATACCACCAAAAAGCCAGGCTCAATCCTCACGGTTGT
TCATTATTTCGCGTCGTCGATCTTCGTTGCTAATTAGTAAGGCGTTCCTG
GCGCTCTGCATAAAATCAAAGCTCGCCTCGTATTCATTACCACGGGTAGA
AACAGTAACATACTACATACCTTTTTTCGGAAGCACGTACAAAAAACATG
TGTGACGATTGCTTATCGGTCTTTCTCTCCTTCCCTTCATTCCCCTCCTT
TGTCTTGTAGATACATCCATACCTGAAGCAAAAACATGGTCGTTCGTGGA
ATATAGACTAGATGCCTGTCTTCCCCGACACGCCTGCATTTATGTTTCTT
ATTCTACGCACCCCCGTTGCCTGCGCGATCCCCCGTTCGAATCCGAAGAC
TGTGGCGAGCGAGGCGGAGCTCGCGCAGCTGCTGACCTCCACCAAGCCGA
ATTCGTTGGTGGTTCTCAATTTTTGTACGGCTCTGTCCAAGGCTTCCAAC
GCGGCCGAGGCAAAATTCGAGAAAACTGCCTCTAAGTTTGGCGAGTGTGG
TGGCGGGATGGGAGTGCACTTCGCCAAAGTGAATTTTGAGAGCAACCACC
AGCTGTTCGAGAAGATGGGCATTCGGTCCGTTCCCCATGTGCAGGTATGT
CCGTTTCCAGTGTTCTGATACTACTTTTCAAGTATAAGTATCGTACATAT
TTGCCCACGGCGGTATTGTGTCCGAGATGCTCTCCCTGCCTACCCGTTCA
AAGGACAGTGGAGCAGGTAGTACAACAACAGTTACGCATTATTTATCTGC
GATACCGCCTCGCCCGTATATTGCGTGTCGAATGTGCGTTCAGACGATCG
ATAGCAACTGAGCCCGGAGAGAATGGTCTAGGGTTGACGATGAGCATTCA
GTGCAGGAGAGGCACGTTTGATATCTCACCTGCCTGGCCTGGCAGCGCTC
TGTTGGTAGAAAAGCTCGGTAGCCGCTTAGATATACCTAGACCACCGGGA
AAATACAGGATCAACTTCGCACTATGTACATACATGTAGAAGGTTCAATT
CTGCCCTTCTGTGTTTGTTTCTCGACTGCTTCTGCGGTCAAGCACCGAAC
TCTGATCTACACCCACCGACGTCTTGCACGGGTCGGATCCGCCTCTCACT
TCTCGCCGCAGATCTTTTCCGGCGACAGCGGCAAGGTCGCGGACTTCAGC
CTCACCAATCTCAGGAACAACACCCTGGACTACCTTCTATCAGACCGCCG
CGAATCGATGCTTGCCTGGCAGTAGTCGAGGCGACAACGGATCGGTGAAG
TCGAGGCGACAATGGATCGGTGTAGTTCGGATGTAGACTGCCCATCCCTG
GGTGGTTGTGTATATGTAACTTATGTTTGTAGACAGACGCGAACCTCCTC
GTTATTTTGGTAGACGGGTGAGACGAGCAAGCGAACAGGCGTCGGAAAAG
GGTGAGTTTGAATCGCCCCGCATTCGGTGTTCGTACCTCTGTCGGGGTGA
AGTTGAGGAATTGTAATACTAAGTTATATCCGAAGACATAGAAGACATAG
ATATGTGTTAGCCTGTCGAAAAAAAATAGACATACATACCTGCTTATCTG
CCATCTGAGTTTCCGAGTGTTCTCGGTTGGTTGGACTGCCACTTGGCTTT
TAGATGATCTATGTGGTGTATGGAGAATGGGCGAGTTATTTTGTTTTGTG
AGAGCGGATGTTCATTAAAGTGGGAACTTCTTGCCGCGCAACATTGCATT
TGTCTCTCGGTCCAGAGACGAACACGGCGTGTCCTGGTTTCCGTTTGCAA
CCCTCAGTTGCTCGGTTAATATTTTTGAGAGAAACGTTTGAGCTCCGCTG
CGTATGTATTCTCGTTTTAGTCAACCAATGTGTGTTTATGGGGGAGCTTG
CCTCCTAAATGTCTCGCATTTCCAATGAGATTCTTGTTTGACTGTGCGCC
CGCAACCAAGCTTTCCTGTATGGGAACTAATGGGAACTAATATGATGCTC
TCTTTTGGTCGGTACACTGAAAGTGAAGCTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8803:1510..4792+

>mRNA_L-elsbetiae_contig8803.17836.1 ID=mRNA_L-elsbetiae_contig8803.17836.1|Name=mRNA_L-elsbetiae_contig8803.17836.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig8803:1510..4792+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCGCGCATCTTCAATTGCCACGGTTCGCCTCGCCCCTCGGGCGGG
CAGTGTCGTATCCACGCCTCCAACTGGCGGATCTCGTTCCTCCCCGGTCC
CTCTGCTTGCGCCTGGGGTGTACAAGCTTCCACCACCGACCGCGCTCTGG
TGCAGCAGAGAAATTACAGGAGGCGCCTCTGCGGTTCAGATGCAGCGCGC
ATCTTCAATTGCCACGGTTCGCCTCGCCCCTCGGGCGGGCAGTGTCGTAT
CCACGCCTCCAACTGGCGGATCTCGTTCCTCCCCGGTCCCTCTGCTTGCG
CCTGGGGTGTACAAGCTTCCACCACCGACCGCGCTCTGGTGCAGCAGAGA
AATTACAGGAGGCGCCTCTGCGGTTCAGACTGTGGCGAGCGAGGCGGAGC
TCGCGCAGCTGCTGACCTCCACCAAGCCGAATTCGTTGGTGGTTCTCAAT
TTTTGTACGGCTCTGTCCAAGGCTTCCAACGCGGCCGAGGCAAAATTCGA
GAAAACTGCCTCTAAGTTTGGCGAGTGTGGTGGCGGGATGGGAGTGCACT
TCGCCAAAGTGAATTTTGAGAGCAACCACCAGCTGTTCGAGAAGATGGGC
ATTCGGTCCGTTCCCCATGTGCAGACTGTGGCGAGCGAGGCGGAGCTCGC
GCAGCTGCTGACCTCCACCAAGCCGAATTCGTTGGTGGTTCTCAATTTTT
GTACGGCTCTGTCCAAGGCTTCCAACGCGGCCGAGGCAAAATTCGAGAAA
ACTGCCTCTAAGTTTGGCGAGTGTGGTGGCGGGATGGGAGTGCACTTCGC
CAAAGTGAATTTTGAGAGCAACCACCAGCTGTTCGAGAAGATGGGCATTC
GGTCCGTTCCCCATGTGCAGATCTTTTCCGGCGACAGCGGCAAGGTCGCG
GACTTCAGCCTCACCAATCTCAGGAACAACACCCTGGACTACCTTCTATC
AGACCGCCGCGAATCGATGCTTGCCTGGCAGTAGATCTTTTCCGGCGACA
GCGGCAAGGTCGCGGACTTCAGCCTCACCAATCTCAGGAACAACACCCTG
GACTACCTTCTATCAGACCGCCGCGAATCGATGCTTGCCTGGCAGTAG
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