mRNA_L-elsbetiae_contig8795.17823.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8795.17823.1
Unique NamemRNA_L-elsbetiae_contig8795.17823.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: D7FLP2_ECTSI (UmuC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP2_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 1.120e-71
Identity = 173/316 (54.75%), Postives = 188/316 (59.49%), Query Frame = 1
Query:  115 MDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLDVGGAADACGRGGSAPGLPEQSL---------GERLAAQSGGHDASQ-----------ESAEGLEDGRVV-----RGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----TEGVGG-CRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLCR 969
            MDGEDLTRYREASE IFSGG               TLLEAQTGLEISL+V G   + G GGS  G  EQ               A   GG  ++Q           ES++  + GR+V     +G+S  +T                                         XXXXXXXXXX      EG GG CRCGC ERLSA SAFA+RVR GL  AVGYTCSAGIGCSKM AKLAGELHKP QQTTILP H MSMI+QLPLRKLPGCGYSTCAKIKT+ GITESRQLQ APWPLLV+AVG KLARVLFLLCR
Sbjct:    1 MDGEDLTRYREASEAIFSGG---------------TLLEAQTGLEISLNVDGNTTS-GSGGSGVGNGEQGTDSNGNMVNHSHNTANPRGGMPSAQHPGRSTPPRVTESSQLAQAGRLVPTGEYQGTSQDSTGSVESGRGLRNAPVSSEIGSSSVGGSKHALSGPEDGDSRGGXXXXXXXXXXXXAGVVEGAGGGCRCGCHERLSAASAFAERVRKGLFIAVGYTCSAGIGCSKMTAKLAGELHKPDQQTTILPEHAMSMITQLPLRKLPGCGYSTCAKIKTEFGITESRQLQGAPWPLLVKAVGTKLARVLFLLCR 300          
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A6H5JY12_9PHAE (UmuC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY12_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 9.340e-70
Identity = 171/346 (49.42%), Postives = 201/346 (58.09%), Query Frame = 1
Query:   16 YLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGA----GITGHLYAPGGGGTLLEAQTGLEISLDVGGAADACGRGGSAPGLPEQSLGER---LAAQSGGHDASQ--------------ESAEGLEDGRVV-----RGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-EGVGG-CRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLCR 969
            Y+   C    + LG+ ++ + V A       +++ G+       +S T   G G     GITGH+Y+PG GGTLLEAQTGLEISL+V G+  + G G S  G  EQ +       A   GG  ++               E ++    GR+V     +G+S  +T                                          XXXXXXXX   +G GG CRCGC ERLSA SAFA+RVR GL EAVGYTCSAGIGCSKM AKLAGELHKP QQTTILP H MSMI+QLPLRKLPGCGYSTCAKIKT+LGITESRQLQ APWPLLV AVG+KLARVLFLLCR
Sbjct:    6 YIASMCGDLVQRLGMDEIFADVTA-------LILHGDGFGGSITSSSTSSGGVGTAAPHGITGHVYSPGSGGTLLEAQTGLEISLNVDGSTTS-GSGVSGVGSGEQGMNNHDHITANPRGGTPSASARQRAGRSTPPKVTEPSQLARAGRLVPTGENQGTSQGSTGSGESGMGLRNAPVSSDIVSGSVGDSKHALSGPEGRDSRGGGXXXXXXXXGVVQGTGGGCRCGCHERLSAASAFAERVRKGLFEAVGYTCSAGIGCSKMTAKLAGELHKPDQQTTILPEHAMSMITQLPLRKLPGCGYSTCAKIKTELGITESRQLQEAPWPLLVEAVGIKLARVLFLLCR 343          
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A7R9UHK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UHK3_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.050e-26
Identity = 88/318 (27.67%), Postives = 126/318 (39.62%), Query Frame = 1
Query:    4 IRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFS-----GGGAG---------------------------ITGHLYAPGGGGTLLEAQTGLEISLDVGGAADACGRGGSAPGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVGGCRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIK 861
            I+QKYL+VTCNY AR  GVRK++SL +AK RCP L+++DG DLT+YR  S  +F+     GG A                            + GHL+ P             E++     AADA                            +++S  G EDG  VR      +                                                         C CGC +RL+  S  A   RM L + +G T S G+  SKM AK+A  L+KP++QTT+LP H ++++  LP R +PG G+   + ++
Sbjct:   41 IKQKYLVVTCNYVARKSGVRKLQSLEDAKLRCPDLIIVDGSDLTKYRAVSMRVFNVLKRFGGAAAKHERLGMDEVFVDVTRAAEEDREDEPRLMGHLFQPDPAAVRAARTLRAELNFREAPAADA---------------------------KAEQSDSGSEDGDWVRDYRETASPDDAKAALADEQL--------------------------------------------CDCGCQKRLARASKIAAEARMALFKEIGLTVSCGVSTSKMLAKIAAGLNKPNKQTTLLPQHALALVHALPTRVIPGLGFGVASALR 287          
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A7SBP1_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SBP1_NEMVE)

HSP 1 Score: 115 bits (289), Expect = 9.700e-26
Identity = 90/318 (28.30%), Postives = 133/318 (41.82%), Query Frame = 1
Query:    1 GIRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLDVGGAADACGRGGSAPGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVGGCRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVL 954
            G+ QK++LVTCNY AR++G++K+ SL EAK++CP LV+++GEDLT+YRE S  +                   T L  +  L +                          ERL       D S+   E ++     RGS IA                                                           C CGC ERL+  S  A  +R  + + +G T  AGI  +K+ AK+AGE +KP++QT +       ++  LP+RK+PG G STCA++ + LGIT   +LQ      L+     +  R+L
Sbjct:   31 GVSQKHILVTCNYVARAMGLKKLISLAEAKKKCPDLVIINGEDLTKYREFSSRV-------------------TKLLRRFALRV--------------------------ERLGLDENYVDVSELVQERMK--HAPRGSYIAVGCIYGDNILKGSSNEV------------------------------------------CPCGCHERLTVGSVIASELRKAIFDEIGLTTCAGIAHNKLLAKIAGEQNKPNKQTLLYTERVEGLMGLLPVRKVPGIGRSTCARLGS-LGITTIAELQECSKKALLNEFNSQEVRIL 258          
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A7S2TNW0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TNW0_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 6.250e-24
Identity = 57/128 (44.53%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  586 TEGVGGCRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLCR 969
            T  V  C CGC  RL   S  A ++R  L + +GYT SAGI  +KMAAKL+GE+HKP+QQTT+LP +    ++ L +RK+PGCGYS+  K++ + G+    QL+A     L+  +G  +   L+LLCR
Sbjct:  115 TSTVDQCNCGCHRRLQIGSCLAKKIRTDLFKELGYTASAGISVTKMAAKLSGEVHKPNQQTTMLPAYVPDFLAALRVRKIPGCGYSSARKLQAE-GVEYVSQLRALSQKKLISLLGELIGSRLYLLCR 241          
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: UPI000A2A9CB6 (DNA polymerase iota n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9CB6)

HSP 1 Score: 97.1 bits (240), Expect = 1.350e-18
Identity = 77/288 (26.74%), Postives = 116/288 (40.28%), Query Frame = 1
Query:    1 GIRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLDVGGAADACGRGGSAPGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVGGCRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKT 864
            GI+QK+++VTCNY AR  G+ K+  + +AK++CP LV+++GEDLT+YR+ S+ +                    LL     L I+  V                      ERL       D +Q     L   R+    +   T                                                         C C C +RL+  S  A  +R  + E +G TC AG+  +K+ AKLAGE HKP+QQT + P +  S +  LP RK+PG G S+  ++++
Sbjct:  112 GIQQKHIVVTCNYVARERGLTKLMRISDAKKKCPDLVLVNGEDLTKYRDFSKRVND------------------LL-----LGITPXV----------------------ERLGFDENFLDVTQ-----LVQARIGDIKNDNNTLSPVGFVYGDKDFVKQTEK--------------------------------------CTCXCHQRLTIGSILASEIREQIFEQIGLTCCAGVAHNKILAKLAGECHKPNQQTVLFPENINSFMQSLPARKIPGVGSSSAKRLQS 311          
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A2K3DVI0_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DVI0_CHLRE)

HSP 1 Score: 94.7 bits (234), Expect = 1.140e-17
Identity = 99/328 (30.18%), Postives = 146/328 (44.51%), Query Frame = 1
Query:    4 IRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLDV-----GGAADACGRGGSAPGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVGGCRCGCWERLSAT-SAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLCR 969
            + QKYL+VTCNY AR+ GV K+  + +AK +CP+LV++ GEDLT YR+AS+ I         G L   G    L   +T ++++ +V      GA +        P  P + +G    A+      + +++   +D R V  ++   +  XXXXXXXXXX                                           GG     W+ L    S  A   R  L    GY  SAGI  +K+ AKL   LHKP  QT I P      ++ LP+R LPG GY T  ++   LG++ + +++      L   +G K   +L+ LCR
Sbjct:   85 VTQKYLVVTCNYLARAAGVTKLMGIKDAKAKCPALVLVSGEDLTPYRQASKAIH--------GVLSRYGPAERLGMDETYVDVTQEVLRRISSGAFEP-------PAPPPRLVGHLHTARCA---VAADTSYRPQDLRAVPTAAAGCSGAXXXXXXXXXXGALAQDAPAGGCGVGEWQVPGSSGGLGAGCSQQQLQQRRQHDGGGVD---WDLLLRVGSMVAAEARAALRSEAGYRSSAGIAPNKLLAKLVSGLHKPDDQTVIAPNQAADFVAPLPVRALPGVGYKTEQQLTERLGVSTAGEVRRLSRQQLADKLGDKTGPLLWHLCR 391          
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A8J4BC14_9CHLO (Uncharacterized protein n=5 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BC14_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 3.820e-17
Identity = 92/332 (27.71%), Postives = 131/332 (39.46%), Query Frame = 1
Query:    1 GIRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGL-EISLDVGGAADACGRGGS--APGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVGGCRCGC-----WERLSAT-SAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLCR 969
            G+ QKYL+VTCNY AR+ GV K+  + +A  RCP LV++ GEDL  YR+AS++I +          Y P         + G+ E  +DV   A    R G+   P  P   +G    A       + +++   +D R V  ++ AT                                                         GC         WERL A  S  A   R  +    G+  SAG+  +KM AKL   LHKP  QT + P      ++ LP+R LPG GY T   +   LG   +  ++      L   +G K   +L+ LCR
Sbjct:   93 GVTQKYLIVTCNYLARAAGVTKLMGIRDAMARCPGLVLVSGEDLGPYRQASKSIHA------VLSRYGP-------AEKLGMDETFVDVTEEALRRIRSGAYDPPAAPPHLVGRVHTATCA---VAADTSYRPQDLRAVPIAATATATAITTVTTSAALSGQPSTAPRALASEPVAGAPRAVVAGGGEGTRGGDVNERAVANAGCSGSIRSAEGWERLLAVGSQVAAEARAAVRAETGFRSSAGVAHNKMLAKLVSGLHKPDDQTVLFPDQAWDFVAPLPVRALPGVGYKTEKLLTEQLGAATAGDVRRYSQQFLADKLGDKSGALLWHLCR 408          
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A2P6V7P0_9CHLO (DNA polymerase iota n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V7P0_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 1.140e-16
Identity = 116/332 (34.94%), Postives = 147/332 (44.28%), Query Frame = 1
Query:    1 GIRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLD---VGGAADACGRGGSAPGLPEQSLGERLAAQSGG------HDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVGGCRCGCWERLSAT-SAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLC 966
            G+ QKYL+VTCNY AR  GV K+    EA+RRCP L ++ GEDLT YR AS+ + +                  L    T  ++ LD   V   A+A                 RLAA + G      H     SA  L+     R   +   XXXXXXXXXXXX        XXXXX       XXXX     XXXXX          G     WE L    SA A   R  +    G   SAGI C+KM AKL   LHKP  QT +LP    + +  LP+R L G G+ T  +++  LG+     L+  P   L++  G ++   L   C
Sbjct:   84 GVTQKYLVVTCNYAAREQGVTKLMGTAEAQRRCPGLALVGGEDLTPYRAASKQMLA-----------------VLQRYGTAEKLGLDEVFVDATAEAQ---------------RRLAAVAPGTALPPWHGHVHTSATRLQQDSRHRPMDLRVAXXXXXXXXXXXXDAAGGAQAXXXXXTGERSGSXXXXGSITHXXXXXVPGSVPPSAAGAS---WEALLRVGSAIAAEARAAVRADAGIRTSAGIACNKMLAKLCSGLHKPDDQTVLLPPEAAAFLEPLPVRALSGVGHKTEGEVEA-LGVRSCADLRRVPRAQLLQRFGERVGSFLHAAC 379          
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A835W7I4_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W7I4_CHLIN)

HSP 1 Score: 90.9 bits (224), Expect = 2.230e-16
Identity = 129/333 (38.74%), Postives = 174/333 (52.25%), Query Frame = 1
Query:    4 IRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLDV-----GGAADACGRGGSAPGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEG-----VGGCRCGCWERLSAT-SAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLCR 969
            + QKYL+VTCNY AR+ GV K+  + +AK +CP+LV++ GEDLT YR+AS+ I         G L   G    L   +T ++++ +V      GA +        P  P + +G    A+      + +++   +D R V        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              +G       G     W+ L    S  A   R  L   VGY  SAGI  +K+ AKL G LHKP  QT I P      ++ LP+R LPG GY T  ++   LG++ + +++      L   +G K   +L+ LCR
Sbjct:   82 VTQKYLVVTCNYLARAAGVTKLMGIKDAKAKCPALVLVSGEDLTPYRQASKAIH--------GVLSRYGPAERLGMDETYVDVTQEVLRRISSGAFEP-------PAPPPRLVGHLHTARCA---VAADTSYRPQDLRAVAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAQAHQEWGEAGHDQGRRQQQAPGVD---WDLLLRVGSMVAAEARAALRSEVGYRSSAGIAPNKLLAKLVGGLHKPDDQTVIAPDQAADFVAPLPVRALPGVGYKTEQQLTERLGVSSAGEVRRFSRQQLADKLGDKTGPLLWHLCR 393          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLP2_ECTSI1.120e-7154.75UmuC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JY12_9PHAE9.340e-7049.42UmuC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7R9UHK3_9STRA1.050e-2627.67Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A7SBP1_NEMVE9.700e-2628.30Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
A0A7S2TNW0_9EUKA6.250e-2444.53Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
UPI000A2A9CB61.350e-1826.74DNA polymerase iota n=1 Tax=Exaiptasia diaphana Ta... [more]
A0A2K3DVI0_CHLRE1.140e-1730.18Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A8J4BC14_9CHLO3.820e-1727.71Uncharacterized protein n=5 Tax=Volvox africanus T... [more]
A0A2P6V7P0_9CHLO1.140e-1634.94DNA polymerase iota n=1 Tax=Micractinium conductri... [more]
A0A835W7I4_CHLIN2.230e-1638.74Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8795contigL-elsbetiae_contig8795:678..4108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.2
Seed ortholog evalue2.6e-63
Seed eggNOG ortholog2880.D7FLP2
KEGG koko:K03510
KEGG Pathwayko03460,map03460
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.DNA synthesis involved in DNA repair
EggNOG OGsCOG0389@1,KOG2095@2759
Ec32 ortholog descriptionDNA-repair protein, UmuC-like
Ec32 orthologEc-17_000370.1
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons6
Model size979
Cds size978
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8795.17823.1prot_L-elsbetiae_contig8795.17823.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8795 678..4108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816958.239451-CDS-L-elsbetiae_contig8795:677..7831622816958.239451-CDS-L-elsbetiae_contig8795:677..783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 678..783 -
1691683941.4092283-CDS-L-elsbetiae_contig8795:677..7831691683941.4092283-CDS-L-elsbetiae_contig8795:677..783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 678..783 -
1622816958.2544224-CDS-L-elsbetiae_contig8795:1411..15011622816958.2544224-CDS-L-elsbetiae_contig8795:1411..1501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 1412..1501 -
1691683941.421995-CDS-L-elsbetiae_contig8795:1411..15011691683941.421995-CDS-L-elsbetiae_contig8795:1411..1501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 1412..1501 -
1622816958.2665472-CDS-L-elsbetiae_contig8795:1900..20011622816958.2665472-CDS-L-elsbetiae_contig8795:1900..2001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 1901..2001 -
1691683941.4341023-CDS-L-elsbetiae_contig8795:1900..20011691683941.4341023-CDS-L-elsbetiae_contig8795:1900..2001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 1901..2001 -
1622816958.2774434-CDS-L-elsbetiae_contig8795:2379..28931622816958.2774434-CDS-L-elsbetiae_contig8795:2379..2893Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 2380..2893 -
1691683941.4453838-CDS-L-elsbetiae_contig8795:2379..28931691683941.4453838-CDS-L-elsbetiae_contig8795:2379..2893Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 2380..2893 -
1622816958.288641-CDS-L-elsbetiae_contig8795:3570..36531622816958.288641-CDS-L-elsbetiae_contig8795:3570..3653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 3571..3653 -
1691683941.4566808-CDS-L-elsbetiae_contig8795:3570..36531691683941.4566808-CDS-L-elsbetiae_contig8795:3570..3653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 3571..3653 -
1622816958.2993188-CDS-L-elsbetiae_contig8795:4024..41081622816958.2993188-CDS-L-elsbetiae_contig8795:4024..4108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 4025..4108 -
1691683941.4760134-CDS-L-elsbetiae_contig8795:4024..41081691683941.4760134-CDS-L-elsbetiae_contig8795:4024..4108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 4025..4108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8795.17823.1

>prot_L-elsbetiae_contig8795.17823.1 ID=prot_L-elsbetiae_contig8795.17823.1|Name=mRNA_L-elsbetiae_contig8795.17823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=326bp
GIRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREA
SETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLDVGGAADACGRGGS
APGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTSGGRSS
GGSGSSSSGGDGSPCVVLARAGPGNEDPPSAQGGCVRRSAAGGGGTEGVG
GCRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELH
KPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQA
APWPLLVRAVGLKLARVLFLLCRQG*
back to top

mRNA from alignment at L-elsbetiae_contig8795:678..4108-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8795.17823.1 ID=mRNA_L-elsbetiae_contig8795.17823.1|Name=mRNA_L-elsbetiae_contig8795.17823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3431bp|location=Sequence derived from alignment at L-elsbetiae_contig8795:678..4108- (Laminarionema elsbetiae ELsaHSoW15)
GGGATCAGGCAGAAATATCTCCTGGTGACCTGCAACTACACCGCCAGAAG TCTCGGGGTCCGCAAGATGGAAAGCTTGGTCGAGGTAAGTGGCAGGCGGG CGGGCGGGTGGGCCGGCGGGCGGGGTGCGTACCTGTGAGACTGCTGTCGT GAGAGAGCTTGGACGAAAACTCAATTTCTGGGGCGGGAGGCACGGGAGGC AGGGGAGACACGTCGATTCTCATGAGAGTGTGTCGTAGACGTTCATCACG TCCCCACAGAGGCGGAACGGAGCGCACCATGACTTGTTTTGCTTCGCCCA GCAGACACACGAAGCGTGTTTTGTTCTGCATTGTCGCATAGGACGCGTCA ACCGCCTGACCACCGGCAGCACGGGAGTTTCACTTCATTGTATATACTCT CTGTGCTTCCCGTGATTTTTCTGGCGTCAATGCTATGTATCGACTGACTC ATCAGGCCAAGCGGCGCTGTCCCAGTCTGGTGGTGATGGACGGCGAAGAC CTCACTCGCTACAGAGAAGCTTCCGAGACGATATTCAGGTGCGGTTTACC AAACCTACTATGTGTGAAGTCACATACCGTAACCACGGGGCCAGCTAGCT CTGGCGCCATCATAATCATCGGAGCCAACTTGGAGGCCGCCCGCCAATCA CCGCATCCCCGCCGAGACTCCGTGGGACCCCGGCATCTTATTATTTGCCG CCCTTGCACGAACGATAGGCAAGGAGCGAGCATATACGCACACGGAAGTG TCTCTTTTCGGCTCTTGGCTTGTTTGCGGTAGCGCGAATTTCGAGAACGG GAGCGTGAGCCTGAAACGTCAACGCGCAATTCTCTCGTGCCCCCACACGA AACATTTATCCCGACCGAAGCTCGGGCCGGGTACGCGCAGTCGGGCACAG TAAACTTTATGCGGCAGAATCCTTGGGTAATTTGCCATGTGAAATGTTCT ACATCCGCCCTTCGTCACCTGCAACCTTTCCGCCAGCAAGCACTGAACGA GTTCCTCTTTTTGTTTTTGCCATCCCCGCTGGTCGCGTTTTCGCCGGCCA CTGCCGCCGCCGCCGCCGCCGCTGCCCCGTTGGCGGTTCCATTTTGGCAC GACGCCACCACGCCTTAAGCTACGTCGCCGGCGTGTGCGGCCCTCTGGTG CAGCGCCTGGGCATGGACGAGATTTTCGCAGACGTGACCGACCTTATCAA AACTTCCACTAGCAGCGGCGGCGGTGCCGGCATCACGGGACACCTCTACG CGCCGGGCGGCGGGGGCACCTTGCTCGAGGCGCAGACCGGACTCGAAATC TCGCTAGATGTCGGTGGCGCTGCCGACGCTTGTGGACGCGGAGGCTCCGC CCCCGGCCTACCGGAACAAAGCCTCGGGGAGCGACTCGCCGCCCAGAGCG GAGGCCACGACGCCAGTCAGGAAAGCGCCGAGGGATTGGAGGATGGTAGG GTCGTGAGAGGTAGCTCGATTGCAACGACTAGCGGTGGCCGCAGCAGCGG CGGCAGCGGCAGCAGCAGCAGCGGCGGCGACGGCAGCCCCTGCGTCGTGC TGGCGCGCGCTGGGCCCGGGAATGAAGACCCACCAAGTGCGCAAGGCGGC TGCGTTCGGCGCTCGGCGGCGGGGGGGGGCGGGACGGAGGGTGTCGGGGG TTGCCGATGCGGGTGTTGGGAGAGGCTGTCGGCGACGAGCGCGTTCGCGG ATCGCGTGCGGATGGGCCTGCTCGAAGCGGTGAGTTTTCTCATTATTGTG TCCGCAGGGAAAACCGTGCATACCTGGCAGGCCGCTTTTCGGCGGCTCGT GTCACGCAGCTCGAAAGTTCGGCTCGAATTCTGAGCGCTCTGGCTTCTCG CGAGGTCGACTCTGCCTGTTTGCCGCCGTCGACGCTCAACATCCCCGGCA TAGAACGCGCGGCCGTTGCTTTTCTGCCTGTGGGCTATTGCTGCTGCTGC TGCTGCTGTTATTTGGAGCCCGAGTTGTTGCAACTACTGGAGAATAAGTC TTGACCGACAATCGTTGGTGAAGCGAAGTATTTCTGCCCTGCCGTGCTGT GCCCTGCCCTGCCCCCGCCGCACCCTTTTGCTGGTTCGGTCGATGCCGAT GCGGAAGGTCGGGTACACGTGCAGCGCCGGGATAGGGTGCTCCAAGATGG CGGCGAAACTGGCGGGAGAGCTCCACAAGCCTCACCAGCAGACGACAATT CTTCCAGGGTAAGTGGGCACGTACGACTCACTCGCTAGCGCTTTCCAAGC ACCGTCCTGCACTCTCCAAATTGTCCCCATGCTGAATGCACCTGTACTTG CGCTTACTCTGTTTTGATGTCCCCCACCACGGGAATTGACCACGTCAGTG TTGGATTAGTACGGATACTAAATACTGGTTAGAGATATCGAAACGGTTTT TAATGTGAAGACAACGACAACAACAACAACAACCGTTTGACGGTTGACGC CGCCAAGACGCACGTGTTTGTCTCCCTCTGCGTAGTGCTCTTGGCAACGA CTTCGGTATATCTCTCTCTCCCTCTCTGTGTTCTCTCTTTTCGTTCGTTC GTTCTTTTTTCTGCCCCTGCCCGTTTATTCTTTGCTGGACGATGCCGGGC GATGCAGGCACACGATGTCCATGATATCGCAGCTCCCGCTTCGCAAGCTG CCCGGTTGCGGGTACTCAACGTGTGCCAAGATTAAGACAGACCTGGGGTG AGGAGGCCCTTCGTTGCTTTGTCATGTTGTCGTCGTCCACAGGGGCAGAC GAAGATCGACGTGTCGGTCGCATCGGTCACAGTTTTCATCTCGATCCGGG GAGGGGCTTAGGCATATTTTGTGACCTACGGGTTATGTAACTCAAAACTC CTGTGGATTACGTAGTACGGTTTGTACGTGCGATTCCGGGTTCATATATA GCGCACGCAGACTTCCGTGTGACGTGTCATTGTCTTGGTCGGCGCAGAAA CTGGACCACTTTTGTTTTGCAAAAATCGCCCTGTCTTTGCCTTTTCCCGT CCATGCTTACATATCCCACCGACCACCTCGGCTTTTCCGCGTACACACCT CCTCCTCCCCCGTTAACCCCCCCCCTCACGCCCCCCGTGGCCGGTGAAGC CCTGAAGAGGATTTGTTGCCTGCCCTGGCTTTGTAAATGATGCGACGTTC TCGGCCTGATCACTACCGCCAAACATGACAGGGGTAAATAATACGCCCCC TACACACGCCCTATGTTTTAGAATATGGTGTCTTACGCCCTTCCACGGCC TTGTTGCTACTGCGCCCCTTGCCCGGCCCCTCTCCGGCAAAACTAAACGT GGCCCCCCTCTTCCTCCTTGCGCAGCATCACCGAGAGCCGCCAGCTCCAG GCTGCCCCCTGGCCGCTCCTCGTGCGCGCGGTCGGCCTCAAGCTCGCGAG GGTGCTCTTTCTGCTGTGCAGGCAAGGATAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8795:678..4108-

>mRNA_L-elsbetiae_contig8795.17823.1 ID=mRNA_L-elsbetiae_contig8795.17823.1|Name=mRNA_L-elsbetiae_contig8795.17823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1956bp|location=Sequence derived from alignment at L-elsbetiae_contig8795:678..4108- (Laminarionema elsbetiae ELsaHSoW15)
GGGATCAGGCAGAAATATCTCCTGGTGACCTGCAACTACACCGCCAGAAG
TCTCGGGGTCCGCAAGATGGAAAGCTTGGTCGAGGGGATCAGGCAGAAAT
ATCTCCTGGTGACCTGCAACTACACCGCCAGAAGTCTCGGGGTCCGCAAG
ATGGAAAGCTTGGTCGAGGCCAAGCGGCGCTGTCCCAGTCTGGTGGTGAT
GGACGGCGAAGACCTCACTCGCTACAGAGAAGCTTCCGAGACGATATTCA
GGCCAAGCGGCGCTGTCCCAGTCTGGTGGTGATGGACGGCGAAGACCTCA
CTCGCTACAGAGAAGCTTCCGAGACGATATTCAGCGGCGGCGGTGCCGGC
ATCACGGGACACCTCTACGCGCCGGGCGGCGGGGGCACCTTGCTCGAGGC
GCAGACCGGACTCGAAATCTCGCTAGATGTCGGTGGCGCTGCCGACGCTT
GTGGACGCGGAGGCTCCGCCCCCGGCCTACCGGAACAAAGCCTCGGGGAG
CGACTCGCCGCCCAGAGCGGAGGCCACGACGCCAGTCAGGAAAGCGCCGA
GGGATTGGAGGATGGTAGGGTCGTGAGAGGTAGCTCGATTGCAACGACTA
GCGGTGGCCGCAGCAGCGGCGGCAGCGGCAGCAGCAGCAGCGGCGGCGAC
GGCAGCCCCTGCGTCGTGCTGGCGCGCGCTGGGCCCGGGAATGAAGACCC
ACCAAGTGCGCAAGGCGGCTGCGTTCGGCGCTCGGCGGCGGGGGGGGGCG
GGACGGAGGGTGTCGGGGGTTGCCGATGCGGGTGTTGGGAGAGGCTGTCG
GCGACGAGCGCGTTCGCGGATCGCGTGCGGATGGGCCTGCTCGAAGCGCG
GCGGCGGTGCCGGCATCACGGGACACCTCTACGCGCCGGGCGGCGGGGGC
ACCTTGCTCGAGGCGCAGACCGGACTCGAAATCTCGCTAGATGTCGGTGG
CGCTGCCGACGCTTGTGGACGCGGAGGCTCCGCCCCCGGCCTACCGGAAC
AAAGCCTCGGGGAGCGACTCGCCGCCCAGAGCGGAGGCCACGACGCCAGT
CAGGAAAGCGCCGAGGGATTGGAGGATGGTAGGGTCGTGAGAGGTAGCTC
GATTGCAACGACTAGCGGTGGCCGCAGCAGCGGCGGCAGCGGCAGCAGCA
GCAGCGGCGGCGACGGCAGCCCCTGCGTCGTGCTGGCGCGCGCTGGGCCC
GGGAATGAAGACCCACCAAGTGCGCAAGGCGGCTGCGTTCGGCGCTCGGC
GGCGGGGGGGGGCGGGACGGAGGGTGTCGGGGGTTGCCGATGCGGGTGTT
GGGAGAGGCTGTCGGCGACGAGCGCGTTCGCGGATCGCGTGCGGATGGGC
CTGCTCGAAGCGGTCGGGTACACGTGCAGCGCCGGGATAGGGTGCTCCAA
GATGGCGGCGAAACTGGCGGGAGAGCTCCACAAGCCTCACCAGCAGACGA
CAATTCTTCCAGGGTCGGGTACACGTGCAGCGCCGGGATAGGGTGCTCCA
AGATGGCGGCGAAACTGGCGGGAGAGCTCCACAAGCCTCACCAGCAGACG
ACAATTCTTCCAGGGCACACGATGTCCATGATATCGCAGCTCCCGCTTCG
CAAGCTGCCCGGTTGCGGGTACTCAACGTGTGCCAAGATTAAGACAGACC
TGGGGCACACGATGTCCATGATATCGCAGCTCCCGCTTCGCAAGCTGCCC
GGTTGCGGGTACTCAACGTGTGCCAAGATTAAGACAGACCTGGGCATCAC
CGAGAGCCGCCAGCTCCAGGCTGCCCCCTGGCCGCTCCTCGTGCGCGCGG
TCGGCCTCAAGCTCGCGAGGGTGCTCTTTCTGCTGTGCAGGCAAGGATAG
CATCACCGAGAGCCGCCAGCTCCAGGCTGCCCCCTGGCCGCTCCTCGTGC
GCGCGGTCGGCCTCAAGCTCGCGAGGGTGCTCTTTCTGCTGTGCAGGCAA
GGATAG
back to top