mRNA_L-elsbetiae_contig8795.17823.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: D7FLP2_ECTSI (UmuC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP2_ECTSI) HSP 1 Score: 245 bits (626), Expect = 1.120e-71 Identity = 173/316 (54.75%), Postives = 188/316 (59.49%), Query Frame = 1
Query: 115 MDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLDVGGAADACGRGGSAPGLPEQSL---------GERLAAQSGGHDASQ-----------ESAEGLEDGRVV-----RGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----TEGVGG-CRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLCR 969
MDGEDLTRYREASE IFSGG TLLEAQTGLEISL+V G + G GGS G EQ A GG ++Q ES++ + GR+V +G+S +T XXXXXXXXXX EG GG CRCGC ERLSA SAFA+RVR GL AVGYTCSAGIGCSKM AKLAGELHKP QQTTILP H MSMI+QLPLRKLPGCGYSTCAKIKT+ GITESRQLQ APWPLLV+AVG KLARVLFLLCR
Sbjct: 1 MDGEDLTRYREASEAIFSGG---------------TLLEAQTGLEISLNVDGNTTS-GSGGSGVGNGEQGTDSNGNMVNHSHNTANPRGGMPSAQHPGRSTPPRVTESSQLAQAGRLVPTGEYQGTSQDSTGSVESGRGLRNAPVSSEIGSSSVGGSKHALSGPEDGDSRGGXXXXXXXXXXXXAGVVEGAGGGCRCGCHERLSAASAFAERVRKGLFIAVGYTCSAGIGCSKMTAKLAGELHKPDQQTTILPEHAMSMITQLPLRKLPGCGYSTCAKIKTEFGITESRQLQGAPWPLLVKAVGTKLARVLFLLCR 300
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A6H5JY12_9PHAE (UmuC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY12_9PHAE) HSP 1 Score: 242 bits (617), Expect = 9.340e-70 Identity = 171/346 (49.42%), Postives = 201/346 (58.09%), Query Frame = 1
Query: 16 YLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGA----GITGHLYAPGGGGTLLEAQTGLEISLDVGGAADACGRGGSAPGLPEQSLGER---LAAQSGGHDASQ--------------ESAEGLEDGRVV-----RGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-EGVGG-CRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLCR 969
Y+ C + LG+ ++ + V A +++ G+ +S T G G GITGH+Y+PG GGTLLEAQTGLEISL+V G+ + G G S G EQ + A GG ++ E ++ GR+V +G+S +T XXXXXXXX +G GG CRCGC ERLSA SAFA+RVR GL EAVGYTCSAGIGCSKM AKLAGELHKP QQTTILP H MSMI+QLPLRKLPGCGYSTCAKIKT+LGITESRQLQ APWPLLV AVG+KLARVLFLLCR
Sbjct: 6 YIASMCGDLVQRLGMDEIFADVTA-------LILHGDGFGGSITSSSTSSGGVGTAAPHGITGHVYSPGSGGTLLEAQTGLEISLNVDGSTTS-GSGVSGVGSGEQGMNNHDHITANPRGGTPSASARQRAGRSTPPKVTEPSQLARAGRLVPTGENQGTSQGSTGSGESGMGLRNAPVSSDIVSGSVGDSKHALSGPEGRDSRGGGXXXXXXXXGVVQGTGGGCRCGCHERLSAASAFAERVRKGLFEAVGYTCSAGIGCSKMTAKLAGELHKPDQQTTILPEHAMSMITQLPLRKLPGCGYSTCAKIKTELGITESRQLQEAPWPLLVEAVGIKLARVLFLLCR 343
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A7R9UHK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UHK3_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.050e-26 Identity = 88/318 (27.67%), Postives = 126/318 (39.62%), Query Frame = 1
Query: 4 IRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFS-----GGGAG---------------------------ITGHLYAPGGGGTLLEAQTGLEISLDVGGAADACGRGGSAPGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVGGCRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIK 861
I+QKYL+VTCNY AR GVRK++SL +AK RCP L+++DG DLT+YR S +F+ GG A + GHL+ P E++ AADA +++S G EDG VR + C CGC +RL+ S A RM L + +G T S G+ SKM AK+A L+KP++QTT+LP H ++++ LP R +PG G+ + ++
Sbjct: 41 IKQKYLVVTCNYVARKSGVRKLQSLEDAKLRCPDLIIVDGSDLTKYRAVSMRVFNVLKRFGGAAAKHERLGMDEVFVDVTRAAEEDREDEPRLMGHLFQPDPAAVRAARTLRAELNFREAPAADA---------------------------KAEQSDSGSEDGDWVRDYRETASPDDAKAALADEQL--------------------------------------------CDCGCQKRLARASKIAAEARMALFKEIGLTVSCGVSTSKMLAKIAAGLNKPNKQTTLLPQHALALVHALPTRVIPGLGFGVASALR 287
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A7SBP1_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SBP1_NEMVE) HSP 1 Score: 115 bits (289), Expect = 9.700e-26 Identity = 90/318 (28.30%), Postives = 133/318 (41.82%), Query Frame = 1
Query: 1 GIRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLDVGGAADACGRGGSAPGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVGGCRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVL 954
G+ QK++LVTCNY AR++G++K+ SL EAK++CP LV+++GEDLT+YRE S + T L + L + ERL D S+ E ++ RGS IA C CGC ERL+ S A +R + + +G T AGI +K+ AK+AGE +KP++QT + ++ LP+RK+PG G STCA++ + LGIT +LQ L+ + R+L
Sbjct: 31 GVSQKHILVTCNYVARAMGLKKLISLAEAKKKCPDLVIINGEDLTKYREFSSRV-------------------TKLLRRFALRV--------------------------ERLGLDENYVDVSELVQERMK--HAPRGSYIAVGCIYGDNILKGSSNEV------------------------------------------CPCGCHERLTVGSVIASELRKAIFDEIGLTTCAGIAHNKLLAKIAGEQNKPNKQTLLYTERVEGLMGLLPVRKVPGIGRSTCARLGS-LGITTIAELQECSKKALLNEFNSQEVRIL 258
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A7S2TNW0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TNW0_9EUKA) HSP 1 Score: 112 bits (279), Expect = 6.250e-24 Identity = 57/128 (44.53%), Postives = 81/128 (63.28%), Query Frame = 1
Query: 586 TEGVGGCRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLCR 969
T V C CGC RL S A ++R L + +GYT SAGI +KMAAKL+GE+HKP+QQTT+LP + ++ L +RK+PGCGYS+ K++ + G+ QL+A L+ +G + L+LLCR
Sbjct: 115 TSTVDQCNCGCHRRLQIGSCLAKKIRTDLFKELGYTASAGISVTKMAAKLSGEVHKPNQQTTMLPAYVPDFLAALRVRKIPGCGYSSARKLQAE-GVEYVSQLRALSQKKLISLLGELIGSRLYLLCR 241
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: UPI000A2A9CB6 (DNA polymerase iota n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9CB6) HSP 1 Score: 97.1 bits (240), Expect = 1.350e-18 Identity = 77/288 (26.74%), Postives = 116/288 (40.28%), Query Frame = 1
Query: 1 GIRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLDVGGAADACGRGGSAPGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVGGCRCGCWERLSATSAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKT 864
GI+QK+++VTCNY AR G+ K+ + +AK++CP LV+++GEDLT+YR+ S+ + LL L I+ V ERL D +Q L R+ + T C C C +RL+ S A +R + E +G TC AG+ +K+ AKLAGE HKP+QQT + P + S + LP RK+PG G S+ ++++
Sbjct: 112 GIQQKHIVVTCNYVARERGLTKLMRISDAKKKCPDLVLVNGEDLTKYRDFSKRVND------------------LL-----LGITPXV----------------------ERLGFDENFLDVTQ-----LVQARIGDIKNDNNTLSPVGFVYGDKDFVKQTEK--------------------------------------CTCXCHQRLTIGSILASEIREQIFEQIGLTCCAGVAHNKILAKLAGECHKPNQQTVLFPENINSFMQSLPARKIPGVGSSSAKRLQS 311
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A2K3DVI0_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DVI0_CHLRE) HSP 1 Score: 94.7 bits (234), Expect = 1.140e-17 Identity = 99/328 (30.18%), Postives = 146/328 (44.51%), Query Frame = 1
Query: 4 IRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLDV-----GGAADACGRGGSAPGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVGGCRCGCWERLSAT-SAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLCR 969
+ QKYL+VTCNY AR+ GV K+ + +AK +CP+LV++ GEDLT YR+AS+ I G L G L +T ++++ +V GA + P P + +G A+ + +++ +D R V ++ + XXXXXXXXXX GG W+ L S A R L GY SAGI +K+ AKL LHKP QT I P ++ LP+R LPG GY T ++ LG++ + +++ L +G K +L+ LCR
Sbjct: 85 VTQKYLVVTCNYLARAAGVTKLMGIKDAKAKCPALVLVSGEDLTPYRQASKAIH--------GVLSRYGPAERLGMDETYVDVTQEVLRRISSGAFEP-------PAPPPRLVGHLHTARCA---VAADTSYRPQDLRAVPTAAAGCSGAXXXXXXXXXXGALAQDAPAGGCGVGEWQVPGSSGGLGAGCSQQQLQQRRQHDGGGVD---WDLLLRVGSMVAAEARAALRSEAGYRSSAGIAPNKLLAKLVSGLHKPDDQTVIAPNQAADFVAPLPVRALPGVGYKTEQQLTERLGVSTAGEVRRLSRQQLADKLGDKTGPLLWHLCR 391
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A8J4BC14_9CHLO (Uncharacterized protein n=5 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BC14_9CHLO) HSP 1 Score: 93.2 bits (230), Expect = 3.820e-17 Identity = 92/332 (27.71%), Postives = 131/332 (39.46%), Query Frame = 1
Query: 1 GIRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGL-EISLDVGGAADACGRGGS--APGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVGGCRCGC-----WERLSAT-SAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLCR 969
G+ QKYL+VTCNY AR+ GV K+ + +A RCP LV++ GEDL YR+AS++I + Y P + G+ E +DV A R G+ P P +G A + +++ +D R V ++ AT GC WERL A S A R + G+ SAG+ +KM AKL LHKP QT + P ++ LP+R LPG GY T + LG + ++ L +G K +L+ LCR
Sbjct: 93 GVTQKYLIVTCNYLARAAGVTKLMGIRDAMARCPGLVLVSGEDLGPYRQASKSIHA------VLSRYGP-------AEKLGMDETFVDVTEEALRRIRSGAYDPPAAPPHLVGRVHTATCA---VAADTSYRPQDLRAVPIAATATATAITTVTTSAALSGQPSTAPRALASEPVAGAPRAVVAGGGEGTRGGDVNERAVANAGCSGSIRSAEGWERLLAVGSQVAAEARAAVRAETGFRSSAGVAHNKMLAKLVSGLHKPDDQTVLFPDQAWDFVAPLPVRALPGVGYKTEKLLTEQLGAATAGDVRRYSQQFLADKLGDKSGALLWHLCR 408
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A2P6V7P0_9CHLO (DNA polymerase iota n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V7P0_9CHLO) HSP 1 Score: 91.7 bits (226), Expect = 1.140e-16 Identity = 116/332 (34.94%), Postives = 147/332 (44.28%), Query Frame = 1
Query: 1 GIRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLD---VGGAADACGRGGSAPGLPEQSLGERLAAQSGG------HDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVGGCRCGCWERLSAT-SAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLC 966
G+ QKYL+VTCNY AR GV K+ EA+RRCP L ++ GEDLT YR AS+ + + L T ++ LD V A+A RLAA + G H SA L+ R + XXXXXXXXXXXX XXXXX XXXX XXXXX G WE L SA A R + G SAGI C+KM AKL LHKP QT +LP + + LP+R L G G+ T +++ LG+ L+ P L++ G ++ L C
Sbjct: 84 GVTQKYLVVTCNYAAREQGVTKLMGTAEAQRRCPGLALVGGEDLTPYRAASKQMLA-----------------VLQRYGTAEKLGLDEVFVDATAEAQ---------------RRLAAVAPGTALPPWHGHVHTSATRLQQDSRHRPMDLRVAXXXXXXXXXXXXDAAGGAQAXXXXXTGERSGSXXXXGSITHXXXXXVPGSVPPSAAGAS---WEALLRVGSAIAAEARAAVRADAGIRTSAGIACNKMLAKLCSGLHKPDDQTVLLPPEAAAFLEPLPVRALSGVGHKTEGEVEA-LGVRSCADLRRVPRAQLLQRFGERVGSFLHAAC 379
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Match: A0A835W7I4_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W7I4_CHLIN) HSP 1 Score: 90.9 bits (224), Expect = 2.230e-16 Identity = 129/333 (38.74%), Postives = 174/333 (52.25%), Query Frame = 1
Query: 4 IRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREASETIFSGGGAGITGHLYAPGGGGTLLEAQTGLEISLDV-----GGAADACGRGGSAPGLPEQSLGERLAAQSGGHDASQESAEGLEDGRVVRGSSIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEG-----VGGCRCGCWERLSAT-SAFADRVRMGLLEAVGYTCSAGIGCSKMAAKLAGELHKPHQQTTILPGHTMSMISQLPLRKLPGCGYSTCAKIKTDLGITESRQLQAAPWPLLVRAVGLKLARVLFLLCR 969
+ QKYL+VTCNY AR+ GV K+ + +AK +CP+LV++ GEDLT YR+AS+ I G L G L +T ++++ +V GA + P P + +G A+ + +++ +D R V XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +G G W+ L S A R L VGY SAGI +K+ AKL G LHKP QT I P ++ LP+R LPG GY T ++ LG++ + +++ L +G K +L+ LCR
Sbjct: 82 VTQKYLVVTCNYLARAAGVTKLMGIKDAKAKCPALVLVSGEDLTPYRQASKAIH--------GVLSRYGPAERLGMDETYVDVTQEVLRRISSGAFEP-------PAPPPRLVGHLHTARCA---VAADTSYRPQDLRAVAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAQAHQEWGEAGHDQGRRQQQAPGVD---WDLLLRVGSMVAAEARAALRSEVGYRSSAGIAPNKLLAKLVGGLHKPDDQTVIAPDQAADFVAPLPVRALPGVGYKTEQQLTERLGVSSAGEVRRFSRQQLADKLGDKTGPLLWHLCR 393 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8795.17823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8795.17823.1 >prot_L-elsbetiae_contig8795.17823.1 ID=prot_L-elsbetiae_contig8795.17823.1|Name=mRNA_L-elsbetiae_contig8795.17823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=326bp GIRQKYLLVTCNYTARSLGVRKMESLVEAKRRCPSLVVMDGEDLTRYREAback to top mRNA from alignment at L-elsbetiae_contig8795:678..4108- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8795.17823.1 ID=mRNA_L-elsbetiae_contig8795.17823.1|Name=mRNA_L-elsbetiae_contig8795.17823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3431bp|location=Sequence derived from alignment at L-elsbetiae_contig8795:678..4108- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8795:678..4108- >mRNA_L-elsbetiae_contig8795.17823.1 ID=mRNA_L-elsbetiae_contig8795.17823.1|Name=mRNA_L-elsbetiae_contig8795.17823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1956bp|location=Sequence derived from alignment at L-elsbetiae_contig8795:678..4108- (Laminarionema elsbetiae ELsaHSoW15)back to top |