mRNA_L-elsbetiae_contig8755.17791.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8755.17791.1 vs. uniprot
Match: A0A6H5JVE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE7_9PHAE) HSP 1 Score: 251 bits (641), Expect = 1.360e-72 Identity = 127/152 (83.55%), Postives = 138/152 (90.79%), Query Frame = 1 Query: 1 RYIAQGKLKTARSMARRVCTLTLLCSGVLATGLLALTGVIPRGFTSDPEVLRRLHRLLPLLAFQQPLIAMTLVAEGLLVGARQFRWLGATTVCSSAVAAGFILVVGKRAPAWDVLGIWGGITAMFVGRFLAAAWRVMDRKRGPYWVLPPTKT 456 RYIAQGKL+TARSMARRV TLTL CSG LAT LL L+GVIPRGFTSDPEVL+RLH+LLPLLAFQQPL+A+TLVAEGLLVGA QFRWL TTV SSAVAA FIL+VG+RAP WDVLGIWGGITAMFVGRFL AAWRVMDRKRGP+WV+P + T Sbjct: 455 RYIAQGKLETARSMARRVLTLTLACSGFLATSLLCLSGVIPRGFTSDPEVLKRLHQLLPLLAFQQPLVALTLVAEGLLVGAGQFRWLATTTVGSSAVAAWFILMVGRRAPGWDVLGIWGGITAMFVGRFLGAAWRVMDRKRGPFWVVPASPT 606
BLAST of mRNA_L-elsbetiae_contig8755.17791.1 vs. uniprot
Match: A0A835YXE7_9STRA (Mate-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE7_9STRA) HSP 1 Score: 166 bits (420), Expect = 3.480e-42 Identity = 81/146 (55.48%), Postives = 105/146 (71.92%), Query Frame = 1 Query: 1 RYIAQGKLKTARSMARRVCTLTLLCSGVLATGLLALTGVIPRGFTSDPEVLRRLHRLLPLLAFQQPLIAMTLVAEGLLVGARQFRWLGATTVCSSAVAAGFILVVGKRAPAWDVLGIWGGITAMFVGRFLAAAWRVMDRKRGPYWV 438 RY+ +G+L+ AR+MA RV LT+ +L L A G +P FT DP + R+ L+PLLA QQPL+A TL+ EGLLVGA+QFRWLGATT+ +++V +L VG+ P V+G+W GIT MFVGRFL AAWR++DRKRGPYWV Sbjct: 289 RYLGRGELRAARAMAARVVALTVASGALLGAALAAARGALPAAFTRDPALAARIGALVPLLALQQPLVAATLLMEGLLVGAQQFRWLGATTLVTTSVGTAAVLAVGRLRPEAGVVGVWWGITGMFVGRFLGAAWRLLDRKRGPYWV 434
BLAST of mRNA_L-elsbetiae_contig8755.17791.1 vs. uniprot
Match: D7FUX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX8_ECTSI) HSP 1 Score: 148 bits (373), Expect = 1.700e-36 Identity = 80/98 (81.63%), Postives = 86/98 (87.76%), Query Frame = 1 Query: 1 RYIAQGKLKTARSMARRVCTLTLLCSGVLATGLLALTGVIPRGFTSDPEVLRRLHRLLPLLAFQQPLIAMTLVAEGLLVGARQFRWLGATTVCSSAVA 294 RYIAQGKL+ ARSMARRV TLTL CSG LAT LL L+GVIPR FTSDPEVL+RLH+LLPLLA QQPL+A+TLVAEGLLVGA QFRWL TTV SSAVA Sbjct: 232 RYIAQGKLENARSMARRVLTLTLACSGFLATSLLCLSGVIPRCFTSDPEVLKRLHQLLPLLAVQQPLVALTLVAEGLLVGAGQFRWLATTTVGSSAVA 329
BLAST of mRNA_L-elsbetiae_contig8755.17791.1 vs. uniprot
Match: A0A7Y3EE14_9BACT (MATE family efflux transporter n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y3EE14_9BACT) HSP 1 Score: 72.0 bits (175), Expect = 9.180e-10 Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 1 Query: 31 ARSMARRVCTLTLLCSGVLATGLLALTGVIPRGFTSDPEVLRRLHRLLPLLAFQQPLIAMTLVAEGLLVGARQFRWLGATTVCSSAVAAGFILVVGKRAPAWDVLGIWGGITAMFVGRFLAAA 399 AR + R+ L+ VLA A +PR FTSDP+ + R+ RLLP + + QPL A+ V +G+L+GA++FR L + S+AVAA +L V W + G+W I A+ R + A Sbjct: 323 ARRVGNRILLWGLIVGIVLAATFAAARPWLPRLFTSDPDAVSRVDRLLPFIIWMQPLNAVVFVWDGILMGAQRFRILAVQMLLSAAVAAALLLRVVPSG--WGLDGVWWAIVALMAVRAITLA 443
BLAST of mRNA_L-elsbetiae_contig8755.17791.1 vs. uniprot
Match: UPI001E4E03A5 (MATE family efflux transporter n=1 Tax=Brevibacterium sp. CCUG 69071 TaxID=2052937 RepID=UPI001E4E03A5) HSP 1 Score: 71.6 bits (174), Expect = 1.130e-9 Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 1 Query: 7 IAQGKLKTARSMARRVCTLTLLCSGVLATGLLALTGVIPRGFTSDPEVLRRLHRLLPLLAFQQPLIAMTLVAEGLLVGARQFRWLGATTVCSSAVAAGFILVVGKRAPAWD-VLGIWGGITAMFVG-RFLAAAWRVMDR 417 + G ++ RR+C ++ ++ LLA +G+IPRGF+SDP+V+ L LLP+LA P+ V +G+L+GA R+L + + G+ L++ W G+W + FVG R + WRV +R Sbjct: 291 LGAGNTDAVAAINRRLCLWGIVFGVIVGVILLAGSGIIPRGFSSDPDVITVLAGLLPILALSMPIAGYVFVLDGVLMGAEDARYLALAQLIA---VGGYALLLIPTVDIWPGAAGLWAAFSIGFVGLRAVTLGWRVRNR 426
BLAST of mRNA_L-elsbetiae_contig8755.17791.1 vs. uniprot
Match: A0A5C5RRC8_9ACTN (MATE family efflux transporter n=1 Tax=Tsukamurella sputi TaxID=2591848 RepID=A0A5C5RRC8_9ACTN) HSP 1 Score: 69.3 bits (168), Expect = 6.470e-9 Identity = 52/144 (36.11%), Postives = 73/144 (50.69%), Query Frame = 1 Query: 7 IAQGKLKTARSMARRVCTLTLLCSGVLATGLLALTGVIPRGFTSDPEVLRRLHRLLPLLAFQQPLIAMTLVAEGLLVGARQFRWLGATTVCSSAVAAGFI-LVVGKRAPAWDVLGIWGGITAMFVGRFLAAAWRVMDRKRGPYW 435 + G ARS+ RRV + L + V+ATGL AL G +PR FTSDP VL L L P+ + +G+L+GA +L T+ ++ V GF+ L+ A W + GIW G+ A V R A V+ R +G W Sbjct: 306 LGSGNATAARSLGRRVTAWSTLFAVVIATGLAALHGTLPRVFTSDPAVLDALAVPWWFLVGMIPIAGVVFALDGVLLGASDAAYLRTATMAAALV--GFLPLIWLSYALGWGLAGIWSGLAAFMVLRCAA----VVLRFQGDRW 443
BLAST of mRNA_L-elsbetiae_contig8755.17791.1 vs. uniprot
Match: A0A1V5JIV7_9BACT (DNA-damage-inducible protein F n=1 Tax=bacterium ADurb.BinA028 TaxID=1866933 RepID=A0A1V5JIV7_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 1.090e-7 Identity = 52/155 (33.55%), Postives = 79/155 (50.97%), Query Frame = 1 Query: 1 RYIAQGKLKTARSMARRVCTLTLLCSGVLATGLL--ALTGVIPRGFTSDPEVLRRLHRLLPLLAFQQPLIAMTLVAEGLLVGARQFRWLGATTVCSSAVAAGFILVVGKRAPAWDVLG-----IWGGITAMFVGRFLAAAWRVMDRKRGPYWVLP 444 R + G++ TAR++ R + LL LA G L A G++PR F+SDP V+ L ++A Q + VA+G+L+GA FR+L V + A A +L V + W G +WGG TA + R ++ WR+ RG W++P Sbjct: 300 RDLGAGRVDTARAVMRTLLRWGLLFG--LAVGALTAAAAGLVPRLFSSDPAVIGYAVPALLVVAAGQVVAGYVFVADGVLMGAGDFRYLAWAMVVALAAYAPVVLFV-RALGVWGEPGRVLVWLWGGYTAFMLARAVSLGWRL----RGDRWLIP 447
BLAST of mRNA_L-elsbetiae_contig8755.17791.1 vs. uniprot
Match: A0A4Z0IX75_9MICO (MATE family efflux transporter n=4 Tax=Brevibacterium TaxID=1696 RepID=A0A4Z0IX75_9MICO) HSP 1 Score: 61.6 bits (148), Expect = 1.780e-6 Identity = 41/126 (32.54%), Postives = 63/126 (50.00%), Query Frame = 1 Query: 46 RRVCTLTLLCSGVLATGLLALTGVIPRGFTSDPEVLRRLHRLLPLLAFQQPLIAMTLVAEGLLVGARQFRWLGATTVCSSAVAAGFILVVGKRAPAWD-VLGIWGGITAMFVG-RFLAAAWRVMDR 417 RR+C ++ V+ L A +G+IPR F SD EV+ L LLP+LA P+ V +G+L+GA R+L + + G+ +++ W G+W FVG R + WRV +R Sbjct: 304 RRLCLWGIVFGLVVGVILFAGSGIIPRAFASDAEVVTELTALLPVLAVSMPIAGYVFVLDGVLMGAEDARYLALAQLVA---VVGYAILLVPIVALWPGAPGLWAAFCIGFVGLRAVTLGWRVRNR 426
BLAST of mRNA_L-elsbetiae_contig8755.17791.1 vs. uniprot
Match: UPI001ADCAF65 (MATE family efflux transporter n=1 Tax=Brevibacterium marinum TaxID=418643 RepID=UPI001ADCAF65) HSP 1 Score: 60.8 bits (146), Expect = 3.040e-6 Identity = 41/124 (33.06%), Postives = 62/124 (50.00%), Query Frame = 1 Query: 46 RRVCTLTLLCSGVLATGLLALTGVIPRGFTSDPEVLRRLHRLLPLLAFQQPLIAMTLVAEGLLVGARQFRWLGATTVCSSAVAAGFILVVGKRAPAWDVLGIWGGITAMFVG-RFLAAAWRVMD 414 RR+C ++ + L A G+IPRGF+S P+V+ +L LLP+LA P+ V +G+L+GA R+L + + A ++ V P L +W FVG R L WRV + Sbjct: 294 RRLCLWGIVFGVAIGIILFAGAGIIPRGFSSAPDVVAQLTSLLPVLALSMPIAGYVFVLDGVLMGAEDARYLALAQLAAVGGYAVLLIPVVVYLP--GALWLWAAFCIGFVGLRALTLGWRVRN 415
BLAST of mRNA_L-elsbetiae_contig8755.17791.1 vs. uniprot
Match: A0A7X7GC47_9ACTN (MATE family efflux transporter n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X7GC47_9ACTN) HSP 1 Score: 60.5 bits (145), Expect = 4.130e-6 Identity = 37/135 (27.41%), Postives = 64/135 (47.41%), Query Frame = 1 Query: 1 RYIAQGKLKTARSMARRVCTLTLLCSGVLATGLLALTGVIPRGFTSDPEVLRRLHRLLPLLAFQQPLIAMTLVAEGLLVGARQFRWLGATTVCSSAVAAGFILVVGKRAPAWDVLGIWGGITAMFVGRFLAAAWR 405 RY+ GK AR + R+ ++ V + ++PR FT+DPEVL + + P + QPL +G+L+GA ++L + S+ + AG +L W + G+W G+ A+ + R + R Sbjct: 297 RYLGAGKSAEARVIGTRIAWWSVAAGVVFSLAYHLAQDLLPRIFTTDPEVLATIATVFPFVILLQPLNGFVFGLDGVLIGASDTKYLAQAMMLSALIGAGIVLAALFFG--WGLQGVWWGLGALMLTRAITVGRR 429 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8755.17791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8755.17791.1 >prot_L-elsbetiae_contig8755.17791.1 ID=prot_L-elsbetiae_contig8755.17791.1|Name=mRNA_L-elsbetiae_contig8755.17791.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp MARRVCTLTLLCSGVLATGLLALTGVIPRGFTSDPEVLRRLHRLLPLLAFback to top mRNA from alignment at L-elsbetiae_contig8755:5845..8178- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8755.17791.1 ID=mRNA_L-elsbetiae_contig8755.17791.1|Name=mRNA_L-elsbetiae_contig8755.17791.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2334bp|location=Sequence derived from alignment at L-elsbetiae_contig8755:5845..8178- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8755:5845..8178- >mRNA_L-elsbetiae_contig8755.17791.1 ID=mRNA_L-elsbetiae_contig8755.17791.1|Name=mRNA_L-elsbetiae_contig8755.17791.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig8755:5845..8178- (Laminarionema elsbetiae ELsaHSoW15)back to top |