mRNA_L-elsbetiae_contig8746.17778.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8746.17778.1
Unique NamemRNA_L-elsbetiae_contig8746.17778.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8746.17778.1 vs. uniprot
Match: A0A6H5KQH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.990e-23
Identity = 127/203 (62.56%), Postives = 139/203 (68.47%), Query Frame = 1 
Query:    1 AAQLARELARVVEGRHRRTLRRSLHLLHRHAEEGLARAVAVGREASCREAGARQLSAVLERNLLRRQARVWGRLLGATVAASGRLQRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAERRHQGEVGRIRAASGXXXXXXXXXXXXXXXXXXXXXXXXXQSRQARQRERALSRAVSCLLRSEARGRRGRMVHYLGQWR 609
            AAQL RELAR VEGR RR LRRSLH  +RHAE  LA AV V REA+ REAGAR+L A LE                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LSAE+RH+GEV  +RAA G XXXXXXXXXXXXXXXXX       +S + RQRE ALSRAVSC+LR+EAR  R R+V YL +WR
Sbjct:   59 AAQLGRELARAVEGRRRRLLRRSLHAWYRHAERRLAHAVTVDREATAREAGARRLFAALEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGLSAEQRHRGEVATVRAACGAXXXXXXXXXXXXXXXXXALSLWRGKSHRGRQREGALSRAVSCVLRAEARVHRDRLVRYLARWR 261
[Close]
BLAST of mRNA_L-elsbetiae_contig8746.17778.1 vs. uniprot
Match: D8LM75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM75_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.170e-11
Identity = 45/61 (73.77%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 AAQLARELARVVEGRHRRTLRRSLHLLHRHAEEGLARAVAVGREASCREAGARQLSAVLER 183
            AAQL RELAR VEG  RR LRRSLH  HRHAE  LA AV V REAS REAGAR+L A LER
Sbjct:  852 AAQLGRELARAVEGGRRRLLRRSLHAWHRHAEGRLAHAVMVDREASAREAGARRLFAALER 912
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8746.17778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQH8_9PHAE2.990e-2362.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM75_ECTSI1.170e-1173.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8746contigL-elsbetiae_contig8746:581..1190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size610
Cds size609
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816954.6802437-CDS-L-elsbetiae_contig8746:580..11891622816954.6802437-CDS-L-elsbetiae_contig8746:580..1189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8746 581..1189 +
1691683938.7496214-CDS-L-elsbetiae_contig8746:580..11891691683938.7496214-CDS-L-elsbetiae_contig8746:580..1189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8746 581..1189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8746.17778.1prot_L-elsbetiae_contig8746.17778.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8746 581..1189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8746.17778.1

>prot_L-elsbetiae_contig8746.17778.1 ID=prot_L-elsbetiae_contig8746.17778.1|Name=mRNA_L-elsbetiae_contig8746.17778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
AAQLARELARVVEGRHRRTLRRSLHLLHRHAEEGLARAVAVGREASCREA
GARQLSAVLERNLLRRQARVWGRLLGATVAASGRLQRERDALERRDRLLA
AAESRSSRRLLSRAWLAWKGLSAERRHQGEVGRIRAASGAVVLAAVARRK
EDEALRQALSLWRGQSRQARQRERALSRAVSCLLRSEARGRRGRMVHYLG
QWR
back to top

mRNA from alignment at L-elsbetiae_contig8746:581..1190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8746.17778.1 ID=mRNA_L-elsbetiae_contig8746.17778.1|Name=mRNA_L-elsbetiae_contig8746.17778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=610bp|location=Sequence derived from alignment at L-elsbetiae_contig8746:581..1190+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCTCAGCTTGCGCGGGAGCTGGCTCGAGTGGTCGAAGGGAGGCACCG
CCGGACCCTCCGGAGGTCGCTGCACCTCTTGCACCGCCATGCCGAGGAGG
GACTGGCTCGGGCGGTCGCGGTCGGCCGCGAGGCGAGCTGCCGGGAGGCC
GGGGCGCGGCAGCTTTCCGCCGTGCTGGAGCGCAACCTTCTCCGGCGGCA
GGCTAGGGTGTGGGGGCGTCTCCTCGGCGCGACCGTGGCCGCCTCGGGAC
GGCTGCAACGAGAGCGGGACGCGCTGGAGCGGCGGGACCGCCTCCTGGCA
GCGGCGGAGTCGAGGTCTTCCCGCCGGCTACTCTCTCGCGCGTGGCTGGC
GTGGAAGGGGCTCTCGGCCGAGCGGAGGCACCAAGGGGAGGTGGGCAGGA
TCCGGGCCGCGAGCGGGGCGGTGGTCCTGGCCGCGGTCGCACGGCGCAAG
GAGGACGAGGCGCTGAGACAGGCGCTGTCCCTGTGGCGCGGACAGTCCCG
CCAGGCGAGGCAGCGGGAGCGGGCGCTGTCGAGGGCGGTCTCCTGCCTGC
TGCGGTCGGAAGCGCGAGGCCGGCGGGGACGCATGGTGCACTACCTCGGG
CAGTGGCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8746:581..1190+

>mRNA_L-elsbetiae_contig8746.17778.1 ID=mRNA_L-elsbetiae_contig8746.17778.1|Name=mRNA_L-elsbetiae_contig8746.17778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig8746:581..1190+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCTCAGCTTGCGCGGGAGCTGGCTCGAGTGGTCGAAGGGAGGCACCG
CCGGACCCTCCGGAGGTCGCTGCACCTCTTGCACCGCCATGCCGAGGAGG
GACTGGCTCGGGCGGTCGCGGTCGGCCGCGAGGCGAGCTGCCGGGAGGCC
GGGGCGCGGCAGCTTTCCGCCGTGCTGGAGCGCAACCTTCTCCGGCGGCA
GGCTAGGGTGTGGGGGCGTCTCCTCGGCGCGACCGTGGCCGCCTCGGGAC
GGCTGCAACGAGAGCGGGACGCGCTGGAGCGGCGGGACCGCCTCCTGGCA
GCGGCGGAGTCGAGGTCTTCCCGCCGGCTACTCTCTCGCGCGTGGCTGGC
GTGGAAGGGGCTCTCGGCCGAGCGGAGGCACCAAGGGGAGGTGGGCAGGA
TCCGGGCCGCGAGCGGGGCGGTGGTCCTGGCCGCGGTCGCACGGCGCAAG
GAGGACGAGGCGCTGAGACAGGCGCTGTCCCTGTGGCGCGGACAGTCCCG
CCAGGCGAGGCAGCGGGAGCGGGCGCTGTCGAGGGCGGTCTCCTGCCTGC
TGCGGTCGGAAGCGCGAGGCCGGCGGGGACGCATGGTGCACTACCTCGGG
CAGTGGCGGGCGGCTCAGCTTGCGCGGGAGCTGGCTCGAGTGGTCGAAGG
GAGGCACCGCCGGACCCTCCGGAGGTCGCTGCACCTCTTGCACCGCCATG
CCGAGGAGGGACTGGCTCGGGCGGTCGCGGTCGGCCGCGAGGCGAGCTGC
CGGGAGGCCGGGGCGCGGCAGCTTTCCGCCGTGCTGGAGCGCAACCTTCT
CCGGCGGCAGGCTAGGGTGTGGGGGCGTCTCCTCGGCGCGACCGTGGCCG
CCTCGGGACGGCTGCAACGAGAGCGGGACGCGCTGGAGCGGCGGGACCGC
CTCCTGGCAGCGGCGGAGTCGAGGTCTTCCCGCCGGCTACTCTCTCGCGC
GTGGCTGGCGTGGAAGGGGCTCTCGGCCGAGCGGAGGCACCAAGGGGAGG
TGGGCAGGATCCGGGCCGCGAGCGGGGCGGTGGTCCTGGCCGCGGTCGCA
CGGCGCAAGGAGGACGAGGCGCTGAGACAGGCGCTGTCCCTGTGGCGCGG
ACAGTCCCGCCAGGCGAGGCAGCGGGAGCGGGCGCTGTCGAGGGCGGTCT
CCTGCCTGCTGCGGTCGGAAGCGCGAGGCCGGCGGGGACGCATGGTGCAC
TACCTCGGGCAGTGGCGG
back to top