mRNA_L-elsbetiae_contig874.17769.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig874.17769.1
Unique NamemRNA_L-elsbetiae_contig874.17769.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig874.17769.1 vs. uniprot
Match: D8LGF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF3_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.160e-49
Identity = 84/97 (86.60%), Postives = 85/97 (87.63%), Query Frame = 1 
Query:    1 MALSTTEQFRPCRRVLTPGFSGANHPRAQGLLRIEPSPRETPRPTGLRTNAKASRRSGYDVPDPGLVLQSKHVVKDDTGRAAKERVSGELTLEKAFG 291
            MA S TEQFRPCRRVLTPGFSG    R QGL RIE SPR TPRPTGLRTNAKASRRSGYD+PDPGLVLQSKHVV DDTGR AKERVSGELTLEKAFG
Sbjct:    1 MAGSATEQFRPCRRVLTPGFSGTEEARPQGLARIESSPRVTPRPTGLRTNAKASRRSGYDIPDPGLVLQSKHVVMDDTGRPAKERVSGELTLEKAFG 97
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BLAST of mRNA_L-elsbetiae_contig874.17769.1 vs. uniprot
Match: A0A835YX95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX95_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.210e-25
Identity = 74/165 (44.85%), Postives = 92/165 (55.76%), Query Frame = 1 
Query:    7 LSTTEQFRPCRRVLTPGFSGANHPRAQGLLRIEPSPRE--TPRPTG----------LRTNAKASRRSGYDVPDPGLVLQSKHVVKDD--TGRAAKERVSGELTLEKAFGLKRKVNSQRERRGGVPAKGNPGDKLFHHVDYSPGFHEHGELAVGSSFYRTVPRRGG 459
            LS T  FRP  R+           +A+      P+ R+  +P PTG          LR   + SRRSG+D+PDP L LQ K VV  D  TG  AK+ VSGELTLE+ FG+K K+   R  R  + A+  PGDKL+HHVDYSPGF+  G   VGS+F R   R GG
Sbjct:   41 LSDTAAFRPHIRI-------DEQAKARRGREASPTGRKHFSPEPTGDGRAASARPGLRQIPELSRRSGFDMPDPDLSLQRKRVVVADAATGAFAKDHVSGELTLERTFGVKHKLAEMRGVRNAI-AQACPGDKLYHHVDYSPGFYREGGHVVGSTFVRDAARVGG 197
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig874.17769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF3_ECTSI1.160e-4986.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YX95_9STRA1.210e-2544.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig874contigL-elsbetiae_contig874:15723..17860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003840.1
Exons5
Model size750
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig874.17769.1prot_L-elsbetiae_contig874.17769.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig874 15723..17860 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816954.0828793-CDS-L-elsbetiae_contig874:15722..158601622816954.0828793-CDS-L-elsbetiae_contig874:15722..15860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig874 15723..15860 -
1691683938.3127456-CDS-L-elsbetiae_contig874:15722..158601691683938.3127456-CDS-L-elsbetiae_contig874:15722..15860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig874 15723..15860 -
1622816954.0938108-CDS-L-elsbetiae_contig874:16138..163131622816954.0938108-CDS-L-elsbetiae_contig874:16138..16313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig874 16139..16313 -
1691683938.326879-CDS-L-elsbetiae_contig874:16138..163131691683938.326879-CDS-L-elsbetiae_contig874:16138..16313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig874 16139..16313 -
1622816954.1036196-CDS-L-elsbetiae_contig874:16642..167901622816954.1036196-CDS-L-elsbetiae_contig874:16642..16790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig874 16643..16790 -
1691683938.340668-CDS-L-elsbetiae_contig874:16642..167901691683938.340668-CDS-L-elsbetiae_contig874:16642..16790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig874 16643..16790 -
1622816954.113118-CDS-L-elsbetiae_contig874:17015..171031622816954.113118-CDS-L-elsbetiae_contig874:17015..17103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig874 17016..17103 -
1691683938.3548741-CDS-L-elsbetiae_contig874:17015..171031691683938.3548741-CDS-L-elsbetiae_contig874:17015..17103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig874 17016..17103 -
1622816954.1243308-CDS-L-elsbetiae_contig874:17659..178601622816954.1243308-CDS-L-elsbetiae_contig874:17659..17860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig874 17660..17860 -
1691683938.3668923-CDS-L-elsbetiae_contig874:17659..178601691683938.3668923-CDS-L-elsbetiae_contig874:17659..17860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig874 17660..17860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig874.17769.1

>prot_L-elsbetiae_contig874.17769.1 ID=prot_L-elsbetiae_contig874.17769.1|Name=mRNA_L-elsbetiae_contig874.17769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=250bp
MALSTTEQFRPCRRVLTPGFSGANHPRAQGLLRIEPSPRETPRPTGLRTN
AKASRRSGYDVPDPGLVLQSKHVVKDDTGRAAKERVSGELTLEKAFGLKR
KVNSQRERRGGVPAKGNPGDKLFHHVDYSPGFHEHGELAVGSSFYRTVPR
RGGERTAPGEVTPPAALPGDLGYNLHYRKPSRAFHETRQAMGYLEDLRAV
LELTEAAPAPPTAADQDEGVSWEDKTGMHTWPRKEKQSPPSATERSSDE*
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mRNA from alignment at L-elsbetiae_contig874:15723..17860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig874.17769.1 ID=mRNA_L-elsbetiae_contig874.17769.1|Name=mRNA_L-elsbetiae_contig874.17769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2138bp|location=Sequence derived from alignment at L-elsbetiae_contig874:15723..17860- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCTTTCTACCACCGAGCAGTTTCGGCCTTGCCGAAGGGTGCTCAC
CCCTGGCTTTTCAGGAGCTAATCACCCGCGAGCGCAGGGACTGCTGAGGA
TCGAGCCGTCACCACGGGAGACCCCCAGGCCTACAGGCCTGCGTACGAAT
GCGAAGGCGTCGCGCCGATCGGGGTACGACGTTCCTGACCCCGGGCTTGT
GGTGAGCTCAGTGCGGCACTGCAGCGTTCTTTATCGAAACACAAGTAAAC
ATGTATATAGGGTAGAAATCTCAGTTTTTGAGGAGGTTGGTCGAGACGAC
AGCATAGACTAGTGTTTGGGGTAACAAGTATCGGGGACAGAGGCAGGTTG
AACACGACGTAGATATACACGAAAACATAAGGAGGGCATGTCGTCTCGGG
CCTCTGGTGTTGGACTGAAAAACCGTGTTTTTTCATGCAATCCGCACACT
TCTATCGTGTTGTGCCGCCTGGAATGTGAAGCGTTGAAATTAGTTCGTAC
ACGCTCGCTCGTGAAGCGCCGCTTCCTTGTGAAACTCGAACTTAGGCTTC
CTGCGGAGAAAATGAATCCGAGCGTTGAACTCTCACCGGAGGCCACCTTT
CGTGGGGTGGTGGTGATACCCAGAGTACCCGACACGTTGACCACAAAACC
TACATAGAGGGTGTTCAAGGACTATCAATAATCGCACCCCTATTCCTGAG
TTCCTGAGCCCCACTCTGCGTTTCTGGGCACACGCCCGGTATTTACTTCG
TTTTCAGCTGCAATCTAAACACGTGGTCAAGGACGATACAGGGCGAGCCG
CTAAGGAGCGTGTTTCCGGGGAGCTCACCTTGGAAAAGGCCTTCGGTGCG
TATGTGCGTGTTATGTAACGTTGGTTTCGCCATTCCCACGACGTGGTACC
TTGTCGAGGCCCTAGTCTTTGCCATTCTTTGCCATTTGGTTGGAGGCCCA
TCATTGGTGCCATATCGAATATGTACTAGTCTTACCGGAACTAGAAATAA
ACTGTTCCTCTCTGAACCCTTTTATGTAGGTCGGTTCCTTAACGTTGATA
GTCTCTGGTGATTGCCGCAGGCTTGAAACGCAAGGTGAACTCACAGCGGG
AGAGGCGAGGAGGCGTGCCTGCCAAGGGGAACCCTGGAGACAAGCTCTTT
CATCACGTGGACTACTCGCCAGGGTTCCATGAACACGGGGAGCTCGCTGT
CGGGAGCTCCTTTTACAGGTGTGGGGCACAGGCTGGTGTTTTTTGACTTT
ACAACGCAGACAGAGGTGGACGCTACCTGGTGCATTATTCGGCCGCTTAT
GACGGAAGACAGATCGGCTTATTCCAGCCCGCTAAAGTGTGAACAATCAA
GCGAGCTGCCAAGGTCGTGGTTCGAAGAGCTGTTTCTCGTTGCCTTGATT
CAAGGCGGCGATGCCCTGTCCATAGGCCGTACGTCCCCCGCCAGATGGAT
GAATTGGTCGCGGCAAGTATTGCGGGCGCCTTGGTTCTTGGAGGACACGG
TCGGCATGGCTTGACCGTACCCCTTTGGATTTTTCGTTTTAATCCAGAAC
TGTGCCTCGTCGTGGTGGCGAGCGTACCGCCCCGGGGGAAGTCACTCCTC
CCGCTGCCCTTCCGGGCGACCTTGGATACAACCTCCACTACCGTAAGCCA
AGCAGGGCATTCCACGAGACGCGGCAGGCGATGGGTTATCTGGAAGACCT
GCGGGCGGTGCTCGAGCTCACAGTGAGTGCTTGCAGCACGTTCAATTTCG
CGGTCAGAGAGCCCACTGTCAAATACGTCCCTCGCTTCCTCGCCGGCACC
ACCCGATTCTATATATGGGAGAGACCCCAATTGCGCGTTGCAGCTCAAAT
CGAACGATACCGTGCTCTAGTCTATACCTTGGGTCAAGAGACTTGACTTT
CTATGCGCTTGCACCCAACTGCACCCATCAAGGTTTCTATGAAACCTCGA
TCAACTCGAACCCCGCACCGTTCTCTGCGCACGCGAACGAAACAATGCAG
GAGGCAGCGCCCGCGCCGCCAACGGCTGCTGACCAGGATGAGGGGGTGAG
CTGGGAGGACAAAACTGGCATGCATACTTGGCCAAGAAAGGAAAAACAAT
CACCGCCATCAGCAACGGAGCGGAGCAGTGATGAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig874:15723..17860-

>mRNA_L-elsbetiae_contig874.17769.1 ID=mRNA_L-elsbetiae_contig874.17769.1|Name=mRNA_L-elsbetiae_contig874.17769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1500bp|location=Sequence derived from alignment at L-elsbetiae_contig874:15723..17860- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCTTTCTACCACCGAGCAGTTTCGGCCTTGCCGAAGGGTGCTCAC
CCCTGGCTTTTCAGGAGCTAATCACCCGCGAGCGCAGGGACTGCTGAGGA
TCGAGCCGTCACCACGGGAGACCCCCAGGCCTACAGGCCTGCGTACGAAT
GCGAAGGCGTCGCGCCGATCGGGGTACGACGTTCCTGACCCCGGGCTTGT
GATGGCGCTTTCTACCACCGAGCAGTTTCGGCCTTGCCGAAGGGTGCTCA
CCCCTGGCTTTTCAGGAGCTAATCACCCGCGAGCGCAGGGACTGCTGAGG
ATCGAGCCGTCACCACGGGAGACCCCCAGGCCTACAGGCCTGCGTACGAA
TGCGAAGGCGTCGCGCCGATCGGGGTACGACGTTCCTGACCCCGGGCTTG
TGCTGCAATCTAAACACGTGGTCAAGGACGATACAGGGCGAGCCGCTAAG
GAGCGTGTTTCCGGGGAGCTCACCTTGGAAAAGGCCTTCGCTGCAATCTA
AACACGTGGTCAAGGACGATACAGGGCGAGCCGCTAAGGAGCGTGTTTCC
GGGGAGCTCACCTTGGAAAAGGCCTTCGGCTTGAAACGCAAGGTGAACTC
ACAGCGGGAGAGGCGAGGAGGCGTGCCTGCCAAGGGGAACCCTGGAGACA
AGCTCTTTCATCACGTGGACTACTCGCCAGGGTTCCATGAACACGGGGAG
CTCGCTGTCGGGAGCTCCTTTTACAGGCTTGAAACGCAAGGTGAACTCAC
AGCGGGAGAGGCGAGGAGGCGTGCCTGCCAAGGGGAACCCTGGAGACAAG
CTCTTTCATCACGTGGACTACTCGCCAGGGTTCCATGAACACGGGGAGCT
CGCTGTCGGGAGCTCCTTTTACAGAACTGTGCCTCGTCGTGGTGGCGAGC
GTACCGCCCCGGGGGAAGTCACTCCTCCCGCTGCCCTTCCGGGCGACCTT
GGATACAACCTCCACTACCGTAAGCCAAGCAGGGCATTCCACGAGACGCG
GCAGGCGATGGGTTATCTGGAAGACCTGCGGGCGGTGCTCGAGCTCACAA
ACTGTGCCTCGTCGTGGTGGCGAGCGTACCGCCCCGGGGGAAGTCACTCC
TCCCGCTGCCCTTCCGGGCGACCTTGGATACAACCTCCACTACCGTAAGC
CAAGCAGGGCATTCCACGAGACGCGGCAGGCGATGGGTTATCTGGAAGAC
CTGCGGGCGGTGCTCGAGCTCACAGAGGCAGCGCCCGCGCCGCCAACGGC
TGCTGACCAGGATGAGGGGGTGAGCTGGGAGGACAAAACTGGCATGCATA
CTTGGCCAAGAAAGGAAAAACAATCACCGCCATCAGCAACGGAGCGGAGC
AGTGATGAGTGAGAGGCAGCGCCCGCGCCGCCAACGGCTGCTGACCAGGA
TGAGGGGGTGAGCTGGGAGGACAAAACTGGCATGCATACTTGGCCAAGAA
AGGAAAAACAATCACCGCCATCAGCAACGGAGCGGAGCAGTGATGAGTGA
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