mRNA_L-elsbetiae_contig8721.17750.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8721.17750.1
Unique NamemRNA_L-elsbetiae_contig8721.17750.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8721.17750.1 vs. uniprot
Match: D7FZY4_ECTSI (DNA repair enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY4_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 9.840e-16
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:  115 RAVSTVSAQGATANVTNEEALQRSVDTASRMAGWAGRVVERVLKEHRQP 261
            RA S VSAQGATA+ TNE ALQRSVD ASRMAGWAGRVVERVLKEHR+P
Sbjct:  821 RASSQVSAQGATASYTNEAALQRSVDMASRMAGWAGRVVERVLKEHRKP 869
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BLAST of mRNA_L-elsbetiae_contig8721.17750.1 vs. uniprot
Match: A0A6H5KXJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ8_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.500e-15
Identity = 63/102 (61.76%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:    1 GAVKEEGSDEDFDGFVDDDXXXXXXXXXXXXEDELARGRAVSTVSAQGATANVTNEEALQRSVDTASRMAGWAGRVVERVLKEHRQPAL-PSSSSSVAAAAG 303
            GAV+E+ SD  FDGFV         XXXXXX       RA S VSAQGAT + TNE ALQRSVD ASRMAGWAGRVVERVLKEHR+    PS S   A+A+G
Sbjct:  788 GAVEED-SDXXFDGFV---------XXXXXXXXXXXXXRASSQVSAQGATTSYTNEAALQRSVDMASRMAGWAGRVVERVLKEHRKARKRPSFSHRAASASG 879
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8721.17750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZY4_ECTSI9.840e-1685.71DNA repair enzyme n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KXJ8_9PHAE2.500e-1561.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8721contigL-elsbetiae_contig8721:2773..5636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog2880.D7FZY4
Preferred namegen-1
KEGG koko:K10846
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000724,GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0008821,GO:0009987,GO:0012501,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0023052,GO:0031570,GO:0033554,GO:0034641,GO:0035556,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045786,GO:0046483,GO:0048519,GO:0048523,GO:0048580,GO:0048581,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051716,GO:0051726,GO:0061062,GO:0061064,GO:0065007,GO:0071704,GO:0072395,GO:0072401,GO:0072422,GO:0090304,GO:0090305,GO:0097190,GO:0097193,GO:0140097,GO:1901360,GO:2000026
EggNOG free text desc.nucleotide-excision repair, DNA incision, 3'-to lesion
EggNOG OGsCOG0258@1,KOG2520@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons3
Model size314
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8721.17750.1prot_L-elsbetiae_contig8721.17750.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8721 2773..5634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816952.48072-CDS-L-elsbetiae_contig8721:2772..29011622816952.48072-CDS-L-elsbetiae_contig8721:2772..2901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8721 2773..2901 +
1691683937.1509972-CDS-L-elsbetiae_contig8721:2772..29011691683937.1509972-CDS-L-elsbetiae_contig8721:2772..2901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8721 2773..2901 +
1622816952.4938433-CDS-L-elsbetiae_contig8721:4351..44801622816952.4938433-CDS-L-elsbetiae_contig8721:4351..4480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8721 4352..4480 +
1691683937.165242-CDS-L-elsbetiae_contig8721:4351..44801691683937.165242-CDS-L-elsbetiae_contig8721:4351..4480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8721 4352..4480 +
1622816952.5076985-CDS-L-elsbetiae_contig8721:5580..56341622816952.5076985-CDS-L-elsbetiae_contig8721:5580..5634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8721 5581..5634 +
1691683937.1773322-CDS-L-elsbetiae_contig8721:5580..56341691683937.1773322-CDS-L-elsbetiae_contig8721:5580..5634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8721 5581..5634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8721.17750.1

>prot_L-elsbetiae_contig8721.17750.1 ID=prot_L-elsbetiae_contig8721.17750.1|Name=mRNA_L-elsbetiae_contig8721.17750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
GAVKEEGSDEDFDGFVDDDDGGDGDEDEEDGEDELARGRAVSTVSAQGAT
ANVTNEEALQRSVDTASRMAGWAGRVVERVLKEHRQPALPSSSSSVAAAA
GSSS
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mRNA from alignment at L-elsbetiae_contig8721:2773..5636+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8721.17750.1 ID=mRNA_L-elsbetiae_contig8721.17750.1|Name=mRNA_L-elsbetiae_contig8721.17750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2864bp|location=Sequence derived from alignment at L-elsbetiae_contig8721:2773..5636+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCCGTGAAGGAGGAGGGCAGCGATGAGGACTTTGATGGGTTCGTGGA
CGACGACGACGGCGGCGACGGCGACGAAGATGAGGAAGACGGGGAAGATG
AGCTGGCGAGGGGTAGAGCTGTGTCCACGGTGAGATAGATGTATGTAGCC
ACCGTGTTTTACCGGACCTTTGTGGGGAGCACTTCTTTGTAGTATATGGT
GTTTTTTAACTCTCTGGTCGCCGCTTGTCGGTTGCTCGATTCACCCGCAG
ATGTTTTGGTTCTCCGGCGAACGTGTTTTGCGCTCCAATCTTCGTTTGCG
GTCGCGACAGGGTACATAGAGCAGCCTTGCCCCCTTCGTGCTGTCTTATG
CTGGTATTCTGCGTGATCGTTTGGCGATGGTAGGGTCTACTTGCGGCTGG
CTCTCAACAGCCTCTGTGTGTTCTGTCAGCTATTTATCTGTCCCTTGGCG
TGTTTGCGTCTTCGGCGCTGTTTTGAGAACCTCTGTCAGAAGTCTTTCAT
CCGTGTCCAGCCATACCTCTCCTTGCCTTTATTGTCTCCAGGTTTTGTTT
TTGGACAACCTCTGTCACGAATATCCGTTACCCCTCCCGTGCCTTTTTAG
AACCTCTGTGAGGAGTCTTTCACCCCACATCTCCCTTGCCTTTCGTCTTC
AGGCTTCTTCTTTCTGAAGACCTCTGCCAGTAGCCTTTCACCCCTCCCGT
GCCCTTTTTTATCTTCAGGCCTCTGCTTTTTAGAAGCCTCTGTCACGCAT
CTCTCATATGTTTCCTAAATATGCCTGGGGCCCGCCCCTGTTTCAGGAGT
GTATTTCACCCTTTTTCACCCTTGGAACGTGTCCTTTTTTCCTCCCGAGC
TTTTTTCCCCCCCCAGGCTTCCGCTTTTCGAAGACCCCTGTCAGGGTATT
TCATCCGCATCCTTACCTGGTACCTCCCTCCCTCCCTTTGGCCTTTTTGT
CTCCAGGCTTCTGCTGCTTTTTTGAAAGCACATCATTTTCTTCAGGGGTC
TTCCATCCTTTCAGTCCTTTGACGTACCCTATAAGAAAAAAAAACCAATG
TTCACCCCCTCCTGTGTGACCCCGGTTGGTTCTAGTTGTACAGACAAATG
CACCGCAAAGTGTAGTACCTCTAAGTACTCCGCAACGTGTAGTACACGTC
CCCACTTGGGGGGACTGTCGCCAAAATAAATGGGAAGGACACACACACAT
GCCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCGC
CGGGCGCAGGCGGAGCGCGCGGGGGGGGGGGGCGCAGAGTGTAGGAACCC
GCCCCCCTTGGGGGGGCTGTCGCCAAAAAAAATGGGAAGGCACCCCACAC
ATGCCTCCCCCCCCCCCCCCCCTCCCTCCTACCTCCGTTGCCTTTTTTTT
GCGTCCAGGCTTTCGCTTTTTGAAGACCTCTCATCGTGTCAGGAGTAATT
TACTTTGAAGACCTCTTATCGTATCAGGAGTAATTTACTTCGTATTTTTC
AGTCCTTTGACGACTTATCCTTTTAACCGGTACATCCCTCCCTCTTTACC
TCCCTTGCCTTTTTTCGTTTTATTTCCAGGTTTCCGCCCAGGGCGCGACG
GCGAACGTGACAAACGAGGAGGCCCTTCAGCGCTCCGTCGACACGGCCTC
GAGGATGGCCGGCTGGGCAGGGAGGGTCGTCGAGAGGGTCCTCAAGGAGC
ACCGGCAGGCAAGAATACTGTGGGGGGTCCGTGAATCGAAGTAGGGGTAT
GTGCATAAGGGGCCAAAGGAGCCCCACGCAACACACAGGTCGAGAGGGCC
CTCAAGGGGCACCGGCAGGCTATAATATTGTGGGGAGCCCGTGAATCGAA
GTAGGGGTGTGTGCATAAAGGGCCGAAGGAGCCCCAAACAACACAGGTGG
AGAGGGTCCTCTAGGAGCCACTGGCGAGAAGACTGTTGTGATTCCGTGAA
TCGAGGTAGGGGGGTATTTATCCGAAGAGAAAGACATGCGGAAGCCCCGC
AAAGACGGAGAGGGTCCTCGAGGAGCAAGGCAGGAATATTGTTGTGATTC
CTCATTCCTTCCTGTGCACAACACAAATAAAATGTTTTTTTGCAAATGTC
TTCCTAAAATACAAAAAAGGGAAGAACAAGAACCAGACACGAAAAACGTT
TGAATGAATGAAATGGCACGCGCATAGGTAATCGTTGTCAAAGCAATCAG
TCGTCGATCGGGCAAATCGAGAGGGGCATACTGCTTTGTCGCGGGTGCGC
TCGGACTGGATCATGCCTCCCCGTTGTCTTGGCTTTTGTTTCAGCCGGTG
GCACCGGTGTGTGTCTTTTTCAGTGCGGTGTTTATCCACTTGGTCTCGCG
GCGTGCGTTTCTTTAGTGTGACCCATCCTCATTCAGGAACGCTTCCTCTG
TCCTCTCTTCCACCTTACGAAACGGTTAGCCCGTCCCAAGTAGGCAATCC
CCCTCTCTCCTCTTCTCCATCTCACACAACGGCTGTCCCGTCCCATTGAA
GCAATTCCCCTCTCTCCTCTCCTCCACCTTACGAAACGGTTGGCCCGTCC
CAAGTAAGCTCTCCCCCTCTTTCCCCTTGTCCGCGTCACCAGACTGCTGG
GGGCTCTCAGTCTTCGGTACTGGTTAGCCCGTCCAAAGCAAGCAACCCCC
GTCTCTCCTCTTCTCCATCTCACACAACGGCTGGCCCGTCCCATTGAAGC
AATTCCCGTCTGCCCTCTCCTCCACCTTAGGAAAAGGTTGGTCCGTCCTA
ATGAAGCAATCCTCCTCTCTCCTCTTGCCCGCGTCACCGAACTGCCGGGG
GTTCTCAGCCTGCACTACCGTCATCGTCATCATCAGTAGCAGCGGCGGCG
GGATCGTCCTCTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8721:2773..5636+

>mRNA_L-elsbetiae_contig8721.17750.1 ID=mRNA_L-elsbetiae_contig8721.17750.1|Name=mRNA_L-elsbetiae_contig8721.17750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig8721:2773..5636+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCCGTGAAGGAGGAGGGCAGCGATGAGGACTTTGATGGGTTCGTGGA
CGACGACGACGGCGGCGACGGCGACGAAGATGAGGAAGACGGGGAAGATG
AGCTGGCGAGGGGTAGAGCTGTGTCCACGGGGGCCGTGAAGGAGGAGGGC
AGCGATGAGGACTTTGATGGGTTCGTGGACGACGACGACGGCGGCGACGG
CGACGAAGATGAGGAAGACGGGGAAGATGAGCTGGCGAGGGGTAGAGCTG
TGTCCACGGTTTCCGCCCAGGGCGCGACGGCGAACGTGACAAACGAGGAG
GCCCTTCAGCGCTCCGTCGACACGGCCTCGAGGATGGCCGGCTGGGCAGG
GAGGGTCGTCGAGAGGGTCCTCAAGGAGCACCGGCAGGTTTCCGCCCAGG
GCGCGACGGCGAACGTGACAAACGAGGAGGCCCTTCAGCGCTCCGTCGAC
ACGGCCTCGAGGATGGCCGGCTGGGCAGGGAGGGTCGTCGAGAGGGTCCT
CAAGGAGCACCGGCAGCCTGCACTACCGTCATCGTCATCATCAGTAGCAG
CGGCGGCGGGATCGTCCTCTCCTGCACTACCGTCATCGTCATCATCAGTA
GCAGCGGCGGCGGGATCGTCCTCT
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