mRNA_L-elsbetiae_contig872.17748.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig872.17748.1
Unique NamemRNA_L-elsbetiae_contig872.17748.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig872.17748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig872contigL-elsbetiae_contig872:23994..24716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size723
Cds size471
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816952.1718326-UTR-L-elsbetiae_contig872:23993..242451622816952.1718326-UTR-L-elsbetiae_contig872:23993..24245Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig872 23994..24245 +
1691683936.887775-UTR-L-elsbetiae_contig872:23993..242451691683936.887775-UTR-L-elsbetiae_contig872:23993..24245Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig872 23994..24245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816952.182958-CDS-L-elsbetiae_contig872:24245..247161622816952.182958-CDS-L-elsbetiae_contig872:24245..24716Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig872 24246..24716 +
1691683936.9021742-CDS-L-elsbetiae_contig872:24245..247161691683936.9021742-CDS-L-elsbetiae_contig872:24245..24716Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig872 24246..24716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig872.17748.1prot_L-elsbetiae_contig872.17748.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig872 24246..24716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig872.17748.1

>prot_L-elsbetiae_contig872.17748.1 ID=prot_L-elsbetiae_contig872.17748.1|Name=mRNA_L-elsbetiae_contig872.17748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
MVLAVNAAARAAVVAVAVAVALVQERCRRCRHGGRRRGLLAKTLAGVRIR
KTHSQGVHALEPERGPAAAAGGGAIASCSAIDAAAASGVVVAASEVWPDS
SGLAAVAAPAVIQVVVATITGVSWSLRPGRVAIRCAILSSPVGIAHQPPP
LSVPLGV
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mRNA from alignment at L-elsbetiae_contig872:23994..24716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig872.17748.1 ID=mRNA_L-elsbetiae_contig872.17748.1|Name=mRNA_L-elsbetiae_contig872.17748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=723bp|location=Sequence derived from alignment at L-elsbetiae_contig872:23994..24716+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTGCAGAGATAGTTGCCAGCGGTGCCATCCCCGCGGAGCCCTCCCCGC
CAGAACCAGCGGAAGAACTCGTGCTGTTGTAGGTGGCGGGAGATGACACG
GAGGTCGCGGACGTAGCGGACGCGAACTTAAACGGAGACAAAATGCTCCC
GCCGCTGACGCCGTTCTCGTGGAGGAACCCGCCGCCGGCGGCGGTCGTGG
CAGAGGCAGAGGATGAGGGCATGCTGCCTAGACTGGGCTCAGAGGACCCA
CCATGGTTTTGGCGGTGAACGCTGCTGCCCGTGCCGCCGTCGTTGCCGTT
GCCGTTGCCGTCGCGCTGGTGCAGGAGAGGTGCCGCCGCTGCCGACACGG
TGGCCGACGCCGCGGCCTCCTGGCGAAAACCCTCGCCGGCGTTCGAATCC
GCAAGACCCATTCGCAGGGCGTGCATGCCCTCGAGCCCGAGCGCGGTCCG
GCTGCTGCTGCCGGCGGCGGCGCCATTGCCAGCTGCAGCGCCATTGATGC
TGCTGCTGCCTCCGGCGTTGTTGTCGCCGCGTCCGAGGTCTGGCCCGATT
CCTCCGGGCTGGCCGCTGTCGCCGCCCCCGCCGTTATTCAGGTGGTGGTG
GCGACCATCACCGGTGTGTCCTGGAGCCTTCGTCCTGGCCGAGTGGCCAT
CCGATGCGCCATTCTCTCCTCCCCTGTCGGCATCGCCCATCAGCCCCCTC
CCCTCTCCGTCCCTTTGGGCGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig872:23994..24716+

>mRNA_L-elsbetiae_contig872.17748.1 ID=mRNA_L-elsbetiae_contig872.17748.1|Name=mRNA_L-elsbetiae_contig872.17748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig872:23994..24716+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTTTGGCGGTGAACGCTGCTGCCCGTGCCGCCGTCGTTGCCGTTGC
CGTTGCCGTCGCGCTGGTGCAGGAGAGGTGCCGCCGCTGCCGACACGGTG
GCCGACGCCGCGGCCTCCTGGCGAAAACCCTCGCCGGCGTTCGAATCCGC
AAGACCCATTCGCAGGGCGTGCATGCCCTCGAGCCCGAGCGCGGTCCGGC
TGCTGCTGCCGGCGGCGGCGCCATTGCCAGCTGCAGCGCCATTGATGCTG
CTGCTGCCTCCGGCGTTGTTGTCGCCGCGTCCGAGGTCTGGCCCGATTCC
TCCGGGCTGGCCGCTGTCGCCGCCCCCGCCGTTATTCAGGTGGTGGTGGC
GACCATCACCGGTGTGTCCTGGAGCCTTCGTCCTGGCCGAGTGGCCATCC
GATGCGCCATTCTCTCCTCCCCTGTCGGCATCGCCCATCAGCCCCCTCCC
CTCTCCGTCCCTTTGGGCGTCATGGTTTTGGCGGTGAACGCTGCTGCCCG
TGCCGCCGTCGTTGCCGTTGCCGTTGCCGTCGCGCTGGTGCAGGAGAGGT
GCCGCCGCTGCCGACACGGTGGCCGACGCCGCGGCCTCCTGGCGAAAACC
CTCGCCGGCGTTCGAATCCGCAAGACCCATTCGCAGGGCGTGCATGCCCT
CGAGCCCGAGCGCGGTCCGGCTGCTGCTGCCGGCGGCGGCGCCATTGCCA
GCTGCAGCGCCATTGATGCTGCTGCTGCCTCCGGCGTTGTTGTCGCCGCG
TCCGAGGTCTGGCCCGATTCCTCCGGGCTGGCCGCTGTCGCCGCCCCCGC
CGTTATTCAGGTGGTGGTGGCGACCATCACCGGTGTGTCCTGGAGCCTTC
GTCCTGGCCGAGTGGCCATCCGATGCGCCATTCTCTCCTCCCCTGTCGGC
ATCGCCCATCAGCCCCCTCCCCTCTCCGTCCCTTTGGGCGTC
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