mRNA_L-elsbetiae_contig8692.17721.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8692.17721.1
Unique NamemRNA_L-elsbetiae_contig8692.17721.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8692.17721.1 vs. uniprot
Match: D7G7N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N7_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.720e-10
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:  333 SAEIADEDLRGVASAVVKRLGTGRPLKPDTFDEFSEAVDRLLKST 467
            SA I+DEDL+ VASA+VKRLGTG+PL+P  FDEFS+AVDR+L+ST
Sbjct:  460 SAGISDEDLKTVASALVKRLGTGKPLQPAAFDEFSDAVDRVLEST 504
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BLAST of mRNA_L-elsbetiae_contig8692.17721.1 vs. uniprot
Match: A0A6H5L2Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.000e-9
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:  336 AEIADEDLRGVASAVVKRLGTGRPLKPDTFDEFSEAVDRLLKST 467
            A I+DEDL+ VASA+VKRLGTG+PL+P  FDEFS+AVDR+L+ST
Sbjct:  606 AGISDEDLKTVASALVKRLGTGKPLQPAAFDEFSDAVDRVLEST 649
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8692.17721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7N7_ECTSI2.720e-1073.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2Q2_9PHAE1.000e-972.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8692contigL-elsbetiae_contig8692:1123..3376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue8.2e-10
Seed eggNOG ortholog2880.D7G7N7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1415)
EggNOG OGs2RXZW@2759,COG3310@1
Ec32 ortholog descriptionProtein of unknown function DUF1415
Ec32 orthologEc-22_001640.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size798
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8692.17721.1prot_L-elsbetiae_contig8692.17721.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8692 1436..3371 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816949.6258638-UTR-L-elsbetiae_contig8692:1122..14351622816949.6258638-UTR-L-elsbetiae_contig8692:1122..1435Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8692 1123..1435 -
1691683934.8006864-UTR-L-elsbetiae_contig8692:1122..14351691683934.8006864-UTR-L-elsbetiae_contig8692:1122..1435Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8692 1123..1435 -
1622816949.6661534-UTR-L-elsbetiae_contig8692:3371..33761622816949.6661534-UTR-L-elsbetiae_contig8692:3371..3376Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8692 3372..3376 -
1691683934.8479228-UTR-L-elsbetiae_contig8692:3371..33761691683934.8479228-UTR-L-elsbetiae_contig8692:3371..3376Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8692 3372..3376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816949.6413786-CDS-L-elsbetiae_contig8692:1435..15551622816949.6413786-CDS-L-elsbetiae_contig8692:1435..1555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8692 1436..1555 -
1691683934.818003-CDS-L-elsbetiae_contig8692:1435..15551691683934.818003-CDS-L-elsbetiae_contig8692:1435..1555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8692 1436..1555 -
1622816949.6520634-CDS-L-elsbetiae_contig8692:3011..33711622816949.6520634-CDS-L-elsbetiae_contig8692:3011..3371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8692 3012..3371 -
1691683934.8325045-CDS-L-elsbetiae_contig8692:3011..33711691683934.8325045-CDS-L-elsbetiae_contig8692:3011..3371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8692 3012..3371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8692.17721.1

>prot_L-elsbetiae_contig8692.17721.1 ID=prot_L-elsbetiae_contig8692.17721.1|Name=mRNA_L-elsbetiae_contig8692.17721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
MSTSFEQGFSSGGVGGNGDGGDDDNDDGGGAADADAAPAAPTSAATTPAT
APPPTSIGGIAAEGSAAPEVVDAVDGYGSGQGASAAATPATTAAAAAAAP
AAAARAAATSAEIADEDLRGVASAVVKRLGTGRPLKPDTFDEFSEAVDRL
LKSTESRTG*
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mRNA from alignment at L-elsbetiae_contig8692:1123..3376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8692.17721.1 ID=mRNA_L-elsbetiae_contig8692.17721.1|Name=mRNA_L-elsbetiae_contig8692.17721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2254bp|location=Sequence derived from alignment at L-elsbetiae_contig8692:1123..3376- (Laminarionema elsbetiae ELsaHSoW15)
GGGCGATGTCGACGAGCTTCGAGCAAGGCTTCTCCTCCGGCGGCGTTGGT
GGCAACGGCGACGGCGGCGACGATGACAATGACGACGGAGGGGGCGCCGC
CGATGCCGATGCCGCGCCTGCCGCACCCACCTCCGCCGCCACCACCCCCG
CCACTGCCCCCCCTCCGACGTCGATTGGAGGCATCGCCGCAGAGGGATCG
GCGGCACCGGAGGTGGTGGACGCCGTGGACGGTTATGGCTCCGGACAGGG
AGCTTCGGCGGCAGCAACACCGGCGACAACGGCAGCAGCAGCAGCAGCGG
CACCGGCGGCGGCCGCGAGGGCGGCGGCGACCTCCGCCGAGATCGCGGAC
GAGGACCTCAGGGGGGTAAGTAAGCTGGACTGCTGCGTCTGTATGTCTGT
CTTGTTGCCGTCTTTTATTTTTATTTTTTTTATACAGGGTCTTGGTATCT
TTTCAGAACGTACGTACATACATAGCCTTGGCAAGTTTTACTGGAAGAAA
TCATATGGGATCAAAGTACATAAAATGGAACGGCTGATGGGGGTTCGGTT
TGGGGTTACATAGGGTCAGGGTTATGGTTGGGGTTACGGAACCCCTGTCT
ATTTATTTCCTGTCTGCATACGGCAGTAATAATAGCACGGGGTAGCTTTC
GCCGGGTAGCAGGCAATGCGGTGGCGCGATCGGCGTGATACCCCGTACCA
GGTACATAGTAGCGTATGCAACTTGATGCCTATTTGGCCGTCGGAAGAAC
GGGCTCGAGCGCGAACGCACCGACGACAGCAACGATGACGACGATGCCAA
TCAATGACAACAATAACAGCAGTAGTAGAGCAGCAATCCAACAAGAACAA
CGACAACAACAACAACAACAACAACAACAACAGCAACGGGACTGTCAAAA
GCTGTTCAACAAGGCTTGCTCGCGTTACTTTAATTGGCCCAGAAAGCGGT
GTTCGCTTCTCTTCCTCGTTTGTTTCTTGCCTTGTTTAGTTGCTTCTTTT
ATCCATCTAACGACTTTGCGTTTTCGGTGTTGATCCAACACGTGTTCCCG
AGCTCGCATTCTCAAGTGCATGGGGAGTTTTGGTTGGTTGCCCCTTTGTA
AACGGTGCCACCATCTTTGCCTTCTTTCTCCTGGCGCCAACGCTATATGT
TGTGGTTGTTTGTTTCTTCGCATTCAAAACCGTTCCGATCTCCCCGCGCA
GTACCTCCCCCTATGGGCGTACTATTCCAACTACACCTGATGCGGTCAAT
TCCCGTGGTCGCAGGCTAACTTTTACCTAAAAAAAGGTATGCTAAAGCAA
CGCTCCTGCCGCCCACTCACTCCCAAACATTCTCAAAAACATTCTCAAAA
ATAGGCCAAAATGGGCATATTTCGACTTCATTTTAGTATGGACAACTGGC
TTTTTTTTTTTTTTTGCATCAGCTTCGTTGAGATTTCAGCTTTGCAACAA
ACCTCACTATAAGGATGATCGGAAAAGTATATGTAAGTGCGCAAACAATT
ACACGCCCATAACTCCCCAGACTTATGGGACAGAGGAAGTACTAAAGCAA
CGCTCCTGCCGCCCACTCACTCCCAAACATTCTTAAAAACATTCTCAAAA
ATAGGCCAAAATGGGCATATTTCGACTTCATTTTAGTTTGGACAACTGGC
TTTTTTTTTTTTGCATCAGCTTTGTTGAGACCTCAGCTTTAGCAACGAAC
CTAACTATAGGATGATCGGAAAAGTGTATGTAAGTGCGCAAACAATTACA
CGCATGTAACTCCCCAGACTTGTGGGACAGAGGAAGTACTAAAGCAACGC
TCCTGCCGCTGACGCTCCCAGGTCGCGAGCGCGGTGGTGAAGAGGCTGGG
CACGGGTCGGCCCCTGAAGCCGGACACGTTTGACGAGTTCAGCGAGGCGG
TGGACCGCCTTCTGAAGTCAACCGAGTCCCGGACGGGTTAGGCCATTGGT
GTATCATGGGGCGATAGATACCCCATGGGGTATGGTATTGTCATACATAT
GTATGTCACGAGGACCCCCTTGATCGAGTCCCCGGCCGGCGGTTTTCAGG
CTTTGTCTGTGGTATGTAGTCGGCGTGAAGATACTAGTTTTGGAGCGATC
CGTGGGGAATACGCAGTCTGGATGATGGGTATGGTCATGTTTATGTCACG
GGGACCCTTACGCCGTTGGTTCCGTTGTTTTCGTGCACTCGAGTCTTACT
TTTGCCTCGCGGGCGATTCCGACCCTCGATTGAAACAGGGGCCACTAGAT
GGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8692:1123..3376-

>mRNA_L-elsbetiae_contig8692.17721.1 ID=mRNA_L-elsbetiae_contig8692.17721.1|Name=mRNA_L-elsbetiae_contig8692.17721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig8692:1123..3376- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGACGAGCTTCGAGCAAGGCTTCTCCTCCGGCGGCGTTGGTGGCAA
CGGCGACGGCGGCGACGATGACAATGACGACGGAGGGGGCGCCGCCGATG
CCGATGCCGCGCCTGCCGCACCCACCTCCGCCGCCACCACCCCCGCCACT
GCCCCCCCTCCGACGTCGATTGGAGGCATCGCCGCAGAGGGATCGGCGGC
ACCGGAGGTGGTGGACGCCGTGGACGGTTATGGCTCCGGACAGGGAGCTT
CGGCGGCAGCAACACCGGCGACAACGGCAGCAGCAGCAGCAGCGGCACCG
GCGGCGGCCGCGAGGGCGGCGGCGACCTCCGCCGAGATCGCGGACGAGGA
CCTCAGGGGGATGTCGACGAGCTTCGAGCAAGGCTTCTCCTCCGGCGGCG
TTGGTGGCAACGGCGACGGCGGCGACGATGACAATGACGACGGAGGGGGC
GCCGCCGATGCCGATGCCGCGCCTGCCGCACCCACCTCCGCCGCCACCAC
CCCCGCCACTGCCCCCCCTCCGACGTCGATTGGAGGCATCGCCGCAGAGG
GATCGGCGGCACCGGAGGTGGTGGACGCCGTGGACGGTTATGGCTCCGGA
CAGGGAGCTTCGGCGGCAGCAACACCGGCGACAACGGCAGCAGCAGCAGC
AGCGGCACCGGCGGCGGCCGCGAGGGCGGCGGCGACCTCCGCCGAGATCG
CGGACGAGGACCTCAGGGGGGTCGCGAGCGCGGTGGTGAAGAGGCTGGGC
ACGGGTCGGCCCCTGAAGCCGGACACGTTTGACGAGTTCAGCGAGGCGGT
GGACCGCCTTCTGAAGTCAACCGAGTCCCGGACGGGTTAGGTCGCGAGCG
CGGTGGTGAAGAGGCTGGGCACGGGTCGGCCCCTGAAGCCGGACACGTTT
GACGAGTTCAGCGAGGCGGTGGACCGCCTTCTGAAGTCAACCGAGTCCCG
GACGGGTTAG
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