mRNA_L-elsbetiae_contig867.17702.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig867.17702.1
Unique NamemRNA_L-elsbetiae_contig867.17702.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig867.17702.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 7.580e-38
Identity = 108/188 (57.45%), Postives = 130/188 (69.15%), Query Frame = 1 
Query:   91 GYAM-HRRHTDTMSSQPSPGLVEGGQGGAATVTPATSLSRSLSWTLPLEPYYPYLSQ--PPEMSRSRSDQI---NYRAARRLQRQ--QQGSVGTRFSHHPRARSSSGYAYSTDEDSASMESKMILNYVESPLKKTPAFWDAPRPVLER---RRESGLLPAGYGTARWRGP---ATSLGPRLSRAVTTD 612
            GYA+ +RR TDT+ SQP+ G  +GG+G   +VTPATS   S+S TLPLE  +  ++   P  M RSRSDQ+   + R++RRLQ+   Q G VGTRF   PRA  S G+AYSTDEDSASMES+MILNYVESPLKKTP FW+APRPVL+R   RRE GLLPAGYGT    G    A  + P  +RA T D
Sbjct: 1607 GYAVVYRRLTDTLYSQPTTGN-DGGEG--TSVTPATSHCPSVSSTLPLELSFSAVAAQGPVAMGRSRSDQLPKCSSRSSRRLQQSPHQPGVVGTRF---PRA-PSGGFAYSTDEDSASMESRMILNYVESPLKKTPEFWEAPRPVLDRLNRRRERGLLPAGYGTGLLTGSSSGAMKVEPGRTRASTAD 1787
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BLAST of mRNA_L-elsbetiae_contig867.17702.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.640e-32
Identity = 94/155 (60.65%), Postives = 111/155 (71.61%), Query Frame = 1 
Query:   91 GYA-MHRRHTDTMSSQPSPGLVEGGQGGAATVTPATSLSRSLSWTLPLEPYYPYLSQ--PPEMSRSRSDQINYRAA--RRLQRQ--QQGSVGTRFSHHPRARSSSGYAYSTDEDSASMESKMILNYVESPLKKTPAFWDAPRPVLER---RRESG 525
            GYA ++RR TD +SSQPS G    G G   +VTPATS   S+S TLPLE  +P ++   P  M RSRSDQ+  R++  RRLQ+   Q G+VGTRF   PRA  S G+AYSTDEDSASMES+MILNYVESPLKKTP FW+APRPVL+R   RRE G
Sbjct: 1599 GYAAVYRRLTDALSSQPSTG---NGGGEGTSVTPATSHCPSVSSTLPLELIFPAVAAQGPVAMGRSRSDQLPKRSSSSRRLQQSPHQSGAVGTRF---PRA-PSGGFAYSTDEDSASMESRMILNYVESPLKKTPEFWEAPRPVLDRLNRRRERG 1746
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig867.17702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPG5_9PHAE7.580e-3857.45P-type phospholipid transporter n=1 Tax=Ectocarpus... [more]
D7FU18_ECTSI2.640e-3260.65Phospholipid-transporting ATPase, putative n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig867contigL-elsbetiae_contig867:1367..3668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog2880.D7FU18
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons3
Model size1025
Cds size1023
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig867.17702.1prot_L-elsbetiae_contig867.17702.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig867 1367..3667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816947.8673203-CDS-L-elsbetiae_contig867:1366..15851622816947.8673203-CDS-L-elsbetiae_contig867:1366..1585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig867 1367..1585 +
1691683933.4989097-CDS-L-elsbetiae_contig867:1366..15851691683933.4989097-CDS-L-elsbetiae_contig867:1366..1585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig867 1367..1585 +
1622816947.8791368-CDS-L-elsbetiae_contig867:2092..23961622816947.8791368-CDS-L-elsbetiae_contig867:2092..2396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig867 2093..2396 +
1691683933.5132318-CDS-L-elsbetiae_contig867:2092..23961691683933.5132318-CDS-L-elsbetiae_contig867:2092..2396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig867 2093..2396 +
1622816947.890657-CDS-L-elsbetiae_contig867:3167..36671622816947.890657-CDS-L-elsbetiae_contig867:3167..3667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig867 3168..3667 +
1691683933.5233033-CDS-L-elsbetiae_contig867:3167..36671691683933.5233033-CDS-L-elsbetiae_contig867:3167..3667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig867 3168..3667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig867.17702.1

>prot_L-elsbetiae_contig867.17702.1 ID=prot_L-elsbetiae_contig867.17702.1|Name=mRNA_L-elsbetiae_contig867.17702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=341bp
RAEAPYAGGRGGVGGSRRGLEGDDDEDDDDGYAMHRRHTDTMSSQPSPGL
VEGGQGGAATVTPATSLSRSLSWTLPLEPYYPYLSQPPEMSRSRSDQINY
RAARRLQRQQQGSVGTRFSHHPRARSSSGYAYSTDEDSASMESKMILNYV
ESPLKKTPAFWDAPRPVLERRRESGLLPAGYGTARWRGPATSLGPRLSRA
VTTDARYAGGGGGRVVNAGGGRIGEASDDYYHAGVRAPPPPPRVRFGSAD
GASGGGGSSGGHRGGGDGRIDRRLRSSASPAAGAAAAAAAASGRSRGDGP
AVQPRRTETSRHRWEGKPDLKRSGSAPHLRGRDARSAIGND
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mRNA from alignment at L-elsbetiae_contig867:1367..3668+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig867.17702.1 ID=mRNA_L-elsbetiae_contig867.17702.1|Name=mRNA_L-elsbetiae_contig867.17702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2302bp|location=Sequence derived from alignment at L-elsbetiae_contig867:1367..3668+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGCGGAAGCTCCGTACGCCGGCGGCCGCGGCGGCGTCGGCGGTTCGCG
GCGAGGGCTTGAGGGAGACGACGACGAGGACGACGATGACGGCTATGCGA
TGCACCGGCGACACACGGACACGATGTCGTCACAGCCGAGCCCCGGTTTG
GTGGAGGGGGGCCAGGGGGGCGCCGCCACTGTGACGCCGGCCACGTCTCT
ATCGCGGTCCCTGTCGTGGGTGAGAGAAAAAATATGTTTTTTTTGTTTGT
TTTTCTTATTTTATTTTTTTAGGTAAACCACGACAGATTGCGCTTCTCTC
TCACTGGCTGATCCAATCCATCCAGTCCCTGGTGCCGTTCCGTCGTCTCA
TTCCTGCTGCAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCTACCCCGCCCCCCCCCCCCCCGCCCCCCAT
ATACAAAAAAAAAACANNNNNNNNNNGCGCCCCCCCCGCCCCCCCCCCGG
GGCCCCGCGCCGGCGGCCTCCCCCGGCGGCGCCCCCCCCCCCCCCCCGGT
CTGCTCTTTCCAACACAAGCCCCATAGCGATCTCTTTGAACGACACCCGT
TCTCCTTGATAAATACATGCATGAAAAAACAACCTCAGCAGCATCCCAGT
TTCCCATCCCCACCCACCCACACCCTCGCCGCCGCCGCTGCCGCTCCTCG
CCCCGCCTTGCGCTCGCGCGCGCCAGACGCTACCACTCGAGCCGTACTAC
CCTTACCTCTCGCAACCACCGGAGATGTCTCGCTCCCGCTCCGACCAGAT
CAACTACCGCGCCGCCCGGAGGCTGCAGCGGCAGCAGCAAGGGTCCGTGG
GGACCAGGTTCTCGCACCACCCCCGCGCTCGCAGCAGCAGCGGGTACGCG
TACTCAACGGACGAGGACTCGGCGTCGATGGAGTCCAAGATGATCCTGAA
CTACGTGGAGAGCCCGCTCAAGAAGACCCCGGCGTTCTGGGACGCGCCTC
GGCCGGTGCTGGAGCGGCGGCGAGAGAGCGGTGCGTGTGGTTCACCCGTT
GCTGCTGCTGCTGCTGCTGCCGCTGCTGTGTACCAACCAGCTTTTGTGCT
TCACACTCGTTTCAAAAACCGTCGCGCGTTTCGAAAACGGGCCTACCCCC
CTACTTTCGCAAAGGCCTGGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CGCCCCCTGCCGCCGTGCCGCCCCATGACCACCCCCCGCCGCCCCNNNNN
NNNNNCGCGTTTTTCTTCTCCCCTCACTCCAACACCCCGCGGCCCCTCCC
GAACGCGCCCCCCCCCCCCCCCCCTCCCCAAGGCCCGCCCCCCCCCCCCC
CCCCCCCCCTCAGTTATTTGTGCTCGTTAAACCTGCAACTCGCTGAGCAC
TTGGTGCTGTAACTGCCAACCTTTTCGTCCCTGCCTGCCTGCCTGACGCT
CGGCAGAAACCGAATAAGCCTCGTTCCGTCCCCTTGAGCTGGTAAAAATG
CGATGGTCGACGGCCCGATGACAAGGGACCCCGTGTAAGAGAGCATGTTC
ACCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTTTGCTCGTCTCCCCGGCT
CCCCCCCCAACATACACTCCCCGCACAACGGGTGTCTTCCCCNNNNNNNN
NNCCCTGCGTCGAGAAATATCCGGGATTTGTCCGCCCGTTGACCACGGGG
CCCGGGTGTAAGAGGCCGTTCCCCCCCCCCCCCCCCCCCTTGTCAACAAT
TTGTCGCCTAATTGCCTCGGTTACCTCGATAAAAATTCACGGCACGCACA
GGTTTGTTACCCGCCGGGTACGGAACGGCGCGCTGGCGAGGCCCGGCGAC
CTCGCTCGGCCCAAGACTCAGCCGAGCAGTCACAACGGATGCTCGATACG
CCGGCGGCGGCGGCGGCCGCGTCGTCAACGCGGGCGGTGGGAGAATTGGT
GAAGCGAGCGACGACTACTACCATGCGGGTGTGCGAGCGCCGCCGCCGCC
GCCGCGGGTCCGGTTTGGCAGCGCCGATGGCGCGAGCGGTGGCGGCGGTA
GTAGCGGCGGCCATCGGGGTGGTGGCGATGGCCGGATCGACAGACGTTTG
AGGTCTTCCGCTTCCCCTGCCGCTGGAGCTGCTGCTGCTGCTGCTGCTGC
CAGCGGCAGATCGCGAGGAGACGGCCCTGCCGTGCAGCCGCGCCGGACCG
AGACGTCGCGACACCGCTGGGAAGGCAAGCCGGACTTGAAGAGGTCTGGC
TCTGCCCCTCACCTGAGGGGGCGAGATGCCCGCAGCGCTATCGGCAACGA
CG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig867:1367..3668+

>mRNA_L-elsbetiae_contig867.17702.1 ID=mRNA_L-elsbetiae_contig867.17702.1|Name=mRNA_L-elsbetiae_contig867.17702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2046bp|location=Sequence derived from alignment at L-elsbetiae_contig867:1367..3668+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGCGGAAGCTCCGTACGCCGGCGGCCGCGGCGGCGTCGGCGGTTCGCG
GCGAGGGCTTGAGGGAGACGACGACGAGGACGACGATGACGGCTATGCGA
TGCACCGGCGACACACGGACACGATGTCGTCACAGCCGAGCCCCGGTTTG
GTGGAGGGGGGCCAGGGGGGCGCCGCCACTGTGACGCCGGCCACGTCTCT
ATCGCGGTCCCTGTCGTGGAGGGCGGAAGCTCCGTACGCCGGCGGCCGCG
GCGGCGTCGGCGGTTCGCGGCGAGGGCTTGAGGGAGACGACGACGAGGAC
GACGATGACGGCTATGCGATGCACCGGCGACACACGGACACGATGTCGTC
ACAGCCGAGCCCCGGTTTGGTGGAGGGGGGCCAGGGGGGCGCCGCCACTG
TGACGCCGGCCACGTCTCTATCGCGGTCCCTGTCGTGGACGCTACCACTC
GAGCCGTACTACCCTTACCTCTCGCAACCACCGGAGATGTCTCGCTCCCG
CTCCGACCAGATCAACTACCGCGCCGCCCGGAGGCTGCAGCGGCAGCAGC
AAGGGTCCGTGGGGACCAGGTTCTCGCACCACCCCCGCGCTCGCAGCAGC
AGCGGGTACGCGTACTCAACGGACGAGGACTCGGCGTCGATGGAGTCCAA
GATGATCCTGAACTACGTGGAGAGCCCGCTCAAGAAGACCCCGGCGTTCT
GGGACGCGCCTCGGCCGGTGCTGGAGCGGCGGCGAGAGAGCGACGCTACC
ACTCGAGCCGTACTACCCTTACCTCTCGCAACCACCGGAGATGTCTCGCT
CCCGCTCCGACCAGATCAACTACCGCGCCGCCCGGAGGCTGCAGCGGCAG
CAGCAAGGGTCCGTGGGGACCAGGTTCTCGCACCACCCCCGCGCTCGCAG
CAGCAGCGGGTACGCGTACTCAACGGACGAGGACTCGGCGTCGATGGAGT
CCAAGATGATCCTGAACTACGTGGAGAGCCCGCTCAAGAAGACCCCGGCG
TTCTGGGACGCGCCTCGGCCGGTGCTGGAGCGGCGGCGAGAGAGCGGTTT
GTTACCCGCCGGGTACGGAACGGCGCGCTGGCGAGGCCCGGCGACCTCGC
TCGGCCCAAGACTCAGCCGAGCAGTCACAACGGATGCTCGATACGCCGGC
GGCGGCGGCGGCCGCGTCGTCAACGCGGGCGGTGGGAGAATTGGTGAAGC
GAGCGACGACTACTACCATGCGGGTGTGCGAGCGCCGCCGCCGCCGCCGC
GGGTCCGGTTTGGCAGCGCCGATGGCGCGAGCGGTGGCGGCGGTAGTAGC
GGCGGCCATCGGGGTGGTGGCGATGGCCGGATCGACAGACGTTTGAGGTC
TTCCGCTTCCCCTGCCGCTGGAGCTGCTGCTGCTGCTGCTGCTGCCAGCG
GCAGATCGCGAGGAGACGGCCCTGCCGTGCAGCCGCGCCGGACCGAGACG
TCGCGACACCGCTGGGAAGGCAAGCCGGACTTGAAGAGGTCTGGCTCTGC
CCCTCACCTGAGGGGGCGAGATGCCCGCAGCGCTATCGGCAACGACGTTT
GTTACCCGCCGGGTACGGAACGGCGCGCTGGCGAGGCCCGGCGACCTCGC
TCGGCCCAAGACTCAGCCGAGCAGTCACAACGGATGCTCGATACGCCGGC
GGCGGCGGCGGCCGCGTCGTCAACGCGGGCGGTGGGAGAATTGGTGAAGC
GAGCGACGACTACTACCATGCGGGTGTGCGAGCGCCGCCGCCGCCGCCGC
GGGTCCGGTTTGGCAGCGCCGATGGCGCGAGCGGTGGCGGCGGTAGTAGC
GGCGGCCATCGGGGTGGTGGCGATGGCCGGATCGACAGACGTTTGAGGTC
TTCCGCTTCCCCTGCCGCTGGAGCTGCTGCTGCTGCTGCTGCTGCCAGCG
GCAGATCGCGAGGAGACGGCCCTGCCGTGCAGCCGCGCCGGACCGAGACG
TCGCGACACCGCTGGGAAGGCAAGCCGGACTTGAAGAGGTCTGGCTCTGC
CCCTCACCTGAGGGGGCGAGATGCCCGCAGCGCTATCGGCAACGAC
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