mRNA_L-elsbetiae_contig864.17675.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig864.17675.1 vs. uniprot
Match: D8LPR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR3_ECTSI) HSP 1 Score: 587 bits (1513), Expect = 1.540e-205 Identity = 324/469 (69.08%), Postives = 363/469 (77.40%), Query Frame = 2
Query: 146 AEFRQVFEGVLANPTEHFSLFDTRGKGLVDVSEVFASAFLFAAGTPRGLDAKLDKLWQLFDFDHNGSLDDVEAEIMLECVVRGASRVAMMPQPEDVLDSIGKLTVSLFSHSKRQAVAGELILRDLQEWISEREDVATFLHNFTEARLIMSSLELVEESVALGMDMCKRAASQDDVSEEHKNGTVDALQAGEILRSLVTVGNMECVKAGMEAVIEADADAVVRMLTGSPGVSSGGREKRVDVQALEGLLRFWVAFSVVDEDGVGSVSVGDLKARGLPRYNIFLQTALLWLGGGTVGEEPSEATVQKTANDIDESQDGLIKRMEWIRYTAVLDEGKGIVGYDGELLKVFRRYDDDRSGSITAHEMITMVRDSVTDAIAEVPD-CCLRPGMQPVVDTLVKDIARDLVAVMDVTGSGMLGWTDFKKNQNLVTTRLATLREFVFSAALHRGG-AAATAAAAEASQGANTSRRPD 1546
AE QVFEG+L NPTE FS+FD RGKGLVDVSEVFASAFLFAAGTP+GLDAKL+K++ LFDFD NG+L DVEAEIMLECVVRG A AGEL LRDL++WISEREDVA FL NF EAR+I+SS ELV+ SVALGM CK + QDD EHK+GTVD +AGEILRSL T+G EC++AG+EAV+EADA AVVRML+G+ G ++GGR +RVDV+ALE LLRFWVAFSVVDEDGVGSVS+GDLKA LLWLGGGT GEEP EATVQKTAN IDESQDG+I R+EW+R+TAVLDEG G VGYDG LLKVFRRYDDD SGSITA EM MVRDSV++AIAE PD C LRP ++PVV+TLVKD+ARDLVAVMDVTGSGMLGWT+FKKNQ LVT RLATLREFVFS AL RGG AAATA A +N S RPD
Sbjct: 29 AEDFQVFEGILTNPTELFSVFDNRGKGLVDVSEVFASAFLFAAGTPKGLDAKLEKIFALFDFDGNGALSDVEAEIMLECVVRGG------------------------------AAAGELTLRDLKDWISEREDVAVFLSNFIEARMIISSQELVDRSVALGMSTCKHPSPQDDSPGEHKDGTVDGARAGEILRSLTTLGKTECLRAGLEAVVEADAAAVVRMLSGNSG-ATGGRRERVDVEALEELLRFWVAFSVVDEDGVGSVSMGDLKA-------------LLWLGGGTGGEEPPEATVQKTANGIDESQDGVINRIEWMRFTAVLDEGTGNVGYDGGLLKVFRRYDDDHSGSITATEMTMMVRDSVSEAIAEAPDNCSLRPDIEPVVETLVKDVARDLVAVMDVTGSGMLGWTEFKKNQTLVTARLATLREFVFSVALQRGGTAAATADAPPELASSNGSTRPD 453
BLAST of mRNA_L-elsbetiae_contig864.17675.1 vs. uniprot
Match: A0A6H5KRT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT1_9PHAE) HSP 1 Score: 108 bits (271), Expect = 3.400e-25 Identity = 61/82 (74.39%), Postives = 66/82 (80.49%), Query Frame = 2
Query: 1304 MQPVVDTLVKDIARDLVAVMDVTGSGMLGWTDFKKNQNLVTTRLATLREFVFSAALHRGG-AAATAAAAEASQGANTSRRPD 1546
M+PVV+TLVKD+ RDLVAVMDVTGSGMLGWT+ KKNQ LVT RLATLREFVFS AL RGG AAATA A +N S RPD
Sbjct: 1 MEPVVETLVKDVTRDLVAVMDVTGSGMLGWTELKKNQTLVTARLATLREFVFSVALQRGGTAAATADAPPELTRSNCSTRPD 82
BLAST of mRNA_L-elsbetiae_contig864.17675.1 vs. uniprot
Match: A0A7S2Y3U1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3U1_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 6.610e-6 Identity = 27/93 (29.03%), Postives = 49/93 (52.69%), Query Frame = 2
Query: 998 ALLWLGGGTVGEEPSEATVQKTANDIDESQDGLIKRMEWIRYTAVLDEGKGIVGYDGELLKVFRRYDDDRSGSITAHEMITMVRDSVTDAIAE 1276
AL+W+ G EP + V+ ++D G + R+EW+ + D G V ++ + F D D SG+ITA EM+ +++ S+ D +++
Sbjct: 6 ALIWISEGIDTPEPFDKVVRVAMEEMDVDNSGHVDRLEWLLFNVHFDPATGCVKPAKQIKESFLSLDTDGSGTITAAEMVEILKQSMEDILSK 98 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig864.17675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig864.17675.1 >prot_L-elsbetiae_contig864.17675.1 ID=prot_L-elsbetiae_contig864.17675.1|Name=mRNA_L-elsbetiae_contig864.17675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=476bp MAMNCAEFRQVFEGVLANPTEHFSLFDTRGKGLVDVSEVFASAFLFAAGTback to top mRNA from alignment at L-elsbetiae_contig864:14382..30576- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig864.17675.1 ID=mRNA_L-elsbetiae_contig864.17675.1|Name=mRNA_L-elsbetiae_contig864.17675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=16195bp|location=Sequence derived from alignment at L-elsbetiae_contig864:14382..30576- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig864:14382..30576- >mRNA_L-elsbetiae_contig864.17675.1 ID=mRNA_L-elsbetiae_contig864.17675.1|Name=mRNA_L-elsbetiae_contig864.17675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2856bp|location=Sequence derived from alignment at L-elsbetiae_contig864:14382..30576- (Laminarionema elsbetiae ELsaHSoW15)back to top |