mRNA_L-elsbetiae_contig861.17644.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig861.17644.1 vs. uniprot
Match: D8LCN6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN6_ECTSI) HSP 1 Score: 360 bits (925), Expect = 1.410e-113 Identity = 260/580 (44.83%), Postives = 316/580 (54.48%), Query Frame = 1
Query: 1 RRWHEPSTITATACVFELIETTTSALAVKKKPVVNVGAARHREALRRARVLKAIDPTTLEIRSGDFYKDFAAESRQSCLESKKEIRLFEERRARESDGQVLSERHRREPVLDAWSPDAAKLCEAAAAAAVQPGGMGVGPRVPLADIYDIFRVLTLTARSITTVDPAFAHFTNLTELDLGRNRLQSLGNLPDRLVTLSCAANELSGKLLGLSRLPDLGATTD----GEGMADVAAGAPPA------IVPSE--GKCDDDQGEAESPSPNRWGEIEFLIASD---ADNGSSITSGPGTFPWATEVARPD----DVDGKRPDERQPQISGEEKXXXXXXXXXXXXAEDRPGRSEGSEKPWNATVSVPPSKAVRDGVCFRGLCVLLFAVEEEHHQAGDVTTEASQGEDETLGGGISMRVGEAASNDRCREXXXXXXXXXXXXXXXXXXXXIKGNGDPPARRTTRAQLRQRRLVGRGYLALSAFLDTQWMHREQQRLGQQRSRVADEKEAGAATASGHVVDYRTGEE--APDG-----GTNDG-AAAVTTSGTCDLMLEPWVVEFLKKGVARRQREREERKETAR 1659
RRW P T+ AT CVF+LI+TTT AL VK+KP V GAARHREALRRA+VL A DPTTL+IRSGDFYKDFAAESR +CLESKKEIR F+E RA+ S+GQ E+ R+EP +AWSPDAAKL EAA AA QPGG+G GPRV L+D Y FRVL L R+ITT+DPAFAHF NLTELDLGRNRL+ L NLP+ LV+LSCAANELSG LPDLG TT A VAA P A V E G ++ E E P P +WG++EFL+ + +DN S T G F WA+EV P D D QPQ E P G PW +V++PPS+ +RD V F GLCVLLF ++E ++G++ET ++G+ PPA+ TT A + VG + F T ++ GHV D G + AP G G N G AA SG C+++LEPWVVE +++GVARR+RER ERKE AR
Sbjct: 34 RRWRPPPTLPATRCVFDLIDTTTPALVVKRKPCVYPGAARHREALRRAKVLTATDPTTLDIRSGDFYKDFAAESRLACLESKKEIRSFDEARAKGSEGQPSGEQRRQEPTPEAWSPDAAKLSEAAMTAASQPGGLGTGPRVTLSDTYRSFRVLNLAERNITTIDPAFAHFENLTELDLGRNRLRKLENLPEGLVSLSCAANELSG-------LPDLGTTTPERTRSTDSAAVAATPPAAGTGKAGTVRGETAGNSEERGDEEEPPLPQQWGDVEFLVPGNNHNSDNHDSPTR-TGWFSWASEVVPPPTETPDADNNDGGSEQPQTEQE------------TVDSTAPDFGNGGT-PWEVSVALPPSREMRDDVRFHGLCVLLFVGDDERE---------AEGKEET----------------------------------------VEGDASPPAK-TTEA-VNNGEFVG----VVDGFNST-------------------DEPTHPPGGEGHVEDGEAGGKTGAPAGMRTLFGVNGGDAAPAKISGECNVVLEPWVVETMREGVARRKRERLERKEAAR 518
BLAST of mRNA_L-elsbetiae_contig861.17644.1 vs. uniprot
Match: A0A6H5JBC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC6_9PHAE) HSP 1 Score: 159 bits (402), Expect = 1.090e-37 Identity = 144/392 (36.73%), Postives = 185/392 (47.19%), Query Frame = 1
Query: 616 KLLGLSRLPDLGATTDGEGMADVAAGAPPAIVPSEG--KCDDDQGEAESPSP-----------NRWGEIEFLIASD---ADNGSSITSGPGTFPWATEVARP----DDVDGKRPDERQPQISGEEKXXXXXXXXXXXXAEDRPGRSEGSEKPWNATVSVPPSKAVRDGVCFRGLCVLLFAVEEEHHQAGDVTTEASQGEDETLGGGISMRVGEAASNDRCREXXXXXXXXXXXXXXXXXXXXIKGNGDPPAR-RTTRAQLRQRRLVGRGYLALSAFLDTQWMHREQ---QRLGQQRSRVADEKEAGAATASGHVVDYRTGEEAPDG-----GTNDGAAA-VTTSGTCDLMLEPWVVEFLKKGVARRQREREERKETARAEAQENVANDPKGK 1701
KLL LS LPDLG TT E A+ A A P+ G K +GE S S +WG++EFL+ D +DN S G F WA EV P D D QPQ E + + PW +V++PPS+ +RD V F+GL V LF ++E ++GE+ET+ G S A + + ++G R R R+RRL GRG+L+LS FLD WM REQ Q +Q+ R D EA + + +TG AP G G NDGAAA T SG C+++LEPWVVE ++KGVARR+RER ERKE ARAEA+ N ANDPKGK
Sbjct: 295 KLLRLSGLPDLGTTTP-ERPRCTASAAVAATPPASGAGKAGAVRGETASNSEXXXXXXXXXPLQKWGDVEFLVPGDNHYSDNHDSPAR-TGWFSWAAEVVPPLTEAPDADSNDGRSEQPQTEQE-------------AVDSTASDVANNGTPWEVSVALPPSREMRDDVRFQGLRVQLFVGDDERE---------AEGEEETVEGDASSPAEAAKAVNNVDSVVDGFSSTGEPTHPPGGEGDVEGEAQDQDRVRPQMLPSRRRRLAGRGHLSLSPFLDPAWMMREQHQPQPQQRQQERGEDVTEAESVVTADGEAGGKTG--APAGMRTLFGVNDGAAAPATISGECNVVLEPWVVETMRKGVARRKRERLERKEAARAEAEVNAANDPKGK 660 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig861.17644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig861.17644.1 >prot_L-elsbetiae_contig861.17644.1 ID=prot_L-elsbetiae_contig861.17644.1|Name=mRNA_L-elsbetiae_contig861.17644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=602bp RRWHEPSTITATACVFELIETTTSALAVKKKPVVNVGAARHREALRRARVback to top mRNA from alignment at L-elsbetiae_contig861:4974..16733- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig861.17644.1 ID=mRNA_L-elsbetiae_contig861.17644.1|Name=mRNA_L-elsbetiae_contig861.17644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11760bp|location=Sequence derived from alignment at L-elsbetiae_contig861:4974..16733- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig861:4974..16733- >mRNA_L-elsbetiae_contig861.17644.1 ID=mRNA_L-elsbetiae_contig861.17644.1|Name=mRNA_L-elsbetiae_contig861.17644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3612bp|location=Sequence derived from alignment at L-elsbetiae_contig861:4974..16733- (Laminarionema elsbetiae ELsaHSoW15)back to top |