prot_L-elsbetiae_contig861.17644.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig861.17644.1
Unique Nameprot_L-elsbetiae_contig861.17644.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length602
Homology
BLAST of mRNA_L-elsbetiae_contig861.17644.1 vs. uniprot
Match: D8LCN6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN6_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 1.410e-113
Identity = 260/580 (44.83%), Postives = 316/580 (54.48%), Query Frame = 0
Query:    1 RRWHEPSTITATACVFELIETTTSALAVKKKPVVNVGAARHREALRRARVLKAIDPTTLEIRSGDFYKDFAAESRQSCLESKKEIRLFEERRARESDGQVLSERHRREPVLDAWSPDAAKLCEAAAAAAVQPGGMGVGPRVPLADIYDIFRVLTLTARSITTVDPAFAHFTNLTELDLGRNRLQSLGNLPDRLVTLSCAANELSGKLLGLSRLPDLGATTD----GEGMADVAAGAPPA------IVPSE--GKCDDDQGEAESPSPNRWGEIEFLIASD---ADNGSSITSGPGTFPWATEVARPD----DVDGKRPDERQPQISGEEKXXXXXXXXXXXXAEDRPGRSEGSEKPWNATVSVPPSKAVRDGVCFRGLCVLLFAVEEEHHQAGDVTTEASQGEDETLGGGISMRVGEAASNDRCREXXXXXXXXXXXXXXXXXXXXIKGNGDPPARRTTRAQLRQRRLVGRGYLALSAFLDTQWMHREQQRLGQQRSRVADEKEAGAATASGHVVDYRTGEE--APDG-----GTNDG-AAAVTTSGTCDLMLEPWVVEFLKKGVARRQREREERKETAR 553
            RRW  P T+ AT CVF+LI+TTT AL VK+KP V  GAARHREALRRA+VL A DPTTL+IRSGDFYKDFAAESR +CLESKKEIR F+E RA+ S+GQ   E+ R+EP  +AWSPDAAKL EAA  AA QPGG+G GPRV L+D Y  FRVL L  R+ITT+DPAFAHF NLTELDLGRNRL+ L NLP+ LV+LSCAANELSG       LPDLG TT         A VAA  P A       V  E  G  ++   E E P P +WG++EFL+  +   +DN  S T   G F WA+EV  P     D D       QPQ   E                  P    G   PW  +V++PPS+ +RD V F GLCVLLF  ++E           ++G++ET                                        ++G+  PPA+ TT A +     VG     +  F  T                   ++        GHV D   G +  AP G     G N G AA    SG C+++LEPWVVE +++GVARR+RER ERKE AR
Sbjct:   34 RRWRPPPTLPATRCVFDLIDTTTPALVVKRKPCVYPGAARHREALRRAKVLTATDPTTLDIRSGDFYKDFAAESRLACLESKKEIRSFDEARAKGSEGQPSGEQRRQEPTPEAWSPDAAKLSEAAMTAASQPGGLGTGPRVTLSDTYRSFRVLNLAERNITTIDPAFAHFENLTELDLGRNRLRKLENLPEGLVSLSCAANELSG-------LPDLGTTTPERTRSTDSAAVAATPPAAGTGKAGTVRGETAGNSEERGDEEEPPLPQQWGDVEFLVPGNNHNSDNHDSPTR-TGWFSWASEVVPPPTETPDADNNDGGSEQPQTEQE------------TVDSTAPDFGNGGT-PWEVSVALPPSREMRDDVRFHGLCVLLFVGDDERE---------AEGKEET----------------------------------------VEGDASPPAK-TTEA-VNNGEFVG----VVDGFNST-------------------DEPTHPPGGEGHVEDGEAGGKTGAPAGMRTLFGVNGGDAAPAKISGECNVVLEPWVVETMREGVARRKRERLERKEAAR 518          
BLAST of mRNA_L-elsbetiae_contig861.17644.1 vs. uniprot
Match: A0A6H5JBC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC6_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.090e-37
Identity = 144/392 (36.73%), Postives = 185/392 (47.19%), Query Frame = 0
Query:  206 KLLGLSRLPDLGATTDGEGMADVAAGAPPAIVPSEG--KCDDDQGEAESPSP-----------NRWGEIEFLIASD---ADNGSSITSGPGTFPWATEVARP----DDVDGKRPDERQPQISGEEKXXXXXXXXXXXXAEDRPGRSEGSEKPWNATVSVPPSKAVRDGVCFRGLCVLLFAVEEEHHQAGDVTTEASQGEDETLGGGISMRVGEAASNDRCREXXXXXXXXXXXXXXXXXXXXIKGNGDPPAR-RTTRAQLRQRRLVGRGYLALSAFLDTQWMHREQ---QRLGQQRSRVADEKEAGAATASGHVVDYRTGEEAPDG-----GTNDGAAA-VTTSGTCDLMLEPWVVEFLKKGVARRQREREERKETARAEAQENVANDPKGK 567
            KLL LS LPDLG TT  E     A+ A  A  P+ G  K    +GE  S S             +WG++EFL+  D   +DN  S     G F WA EV  P     D D       QPQ   E               +        +  PW  +V++PPS+ +RD V F+GL V LF  ++E           ++GE+ET+ G  S     A + +                        ++G      R R      R+RRL GRG+L+LS FLD  WM REQ   Q   +Q+ R  D  EA +   +      +TG  AP G     G NDGAAA  T SG C+++LEPWVVE ++KGVARR+RER ERKE ARAEA+ N ANDPKGK
Sbjct:  295 KLLRLSGLPDLGTTTP-ERPRCTASAAVAATPPASGAGKAGAVRGETASNSEXXXXXXXXXPLQKWGDVEFLVPGDNHYSDNHDSPAR-TGWFSWAAEVVPPLTEAPDADSNDGRSEQPQTEQE-------------AVDSTASDVANNGTPWEVSVALPPSREMRDDVRFQGLRVQLFVGDDERE---------AEGEEETVEGDASSPAEAAKAVNNVDSVVDGFSSTGEPTHPPGGEGDVEGEAQDQDRVRPQMLPSRRRRLAGRGHLSLSPFLDPAWMMREQHQPQPQQRQQERGEDVTEAESVVTADGEAGGKTG--APAGMRTLFGVNDGAAAPATISGECNVVLEPWVVETMRKGVARRKRERLERKEAARAEAEVNAANDPKGK 660          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig861.17644.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCN6_ECTSI1.410e-11344.83Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JBC6_9PHAE1.090e-3736.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 539..559
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 151..215
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 141..220
e-value: 6.6E-8
score: 33.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 172..193
score: 8.297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig861contigL-elsbetiae_contig861:4974..16733 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig861.17644.1mRNA_L-elsbetiae_contig861.17644.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig861 4974..16733 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig861.17644.1 ID=prot_L-elsbetiae_contig861.17644.1|Name=mRNA_L-elsbetiae_contig861.17644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=602bp
RRWHEPSTITATACVFELIETTTSALAVKKKPVVNVGAARHREALRRARV
LKAIDPTTLEIRSGDFYKDFAAESRQSCLESKKEIRLFEERRARESDGQV
LSERHRREPVLDAWSPDAAKLCEAAAAAAVQPGGMGVGPRVPLADIYDIF
RVLTLTARSITTVDPAFAHFTNLTELDLGRNRLQSLGNLPDRLVTLSCAA
NELSGKLLGLSRLPDLGATTDGEGMADVAAGAPPAIVPSEGKCDDDQGEA
ESPSPNRWGEIEFLIASDADNGSSITSGPGTFPWATEVARPDDVDGKRPD
ERQPQISGEEKHAEQPDVSTEPEAEDRPGRSEGSEKPWNATVSVPPSKAV
RDGVCFRGLCVLLFAVEEEHHQAGDVTTEASQGEDETLGGGISMRVGEAA
SNDRCREDDDDGGGVFKEDHPGGGGEEIKGNGDPPARRTTRAQLRQRRLV
GRGYLALSAFLDTQWMHREQQRLGQQRSRVADEKEAGAATASGHVVDYRT
GEEAPDGGTNDGAAAVTTSGTCDLMLEPWVVEFLKKGVARRQREREERKE
TARAEAQENVANDPKGKNAKAAAAAAAAKGPEEEEEEKEEEIGSSPFASA
QV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt