mRNA_L-elsbetiae_contig8050.17042.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8050.17042.1
Unique NamemRNA_L-elsbetiae_contig8050.17042.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8050.17042.1 vs. uniprot
Match: A0A1Y2HV25_9FUNG (Uncharacterized protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HV25_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 8.800e-8
Identity = 43/131 (32.82%), Postives = 66/131 (50.38%), Query Frame = 1 
Query:   19 VWSEMTQSGVKPSAHAWSSRVDAHARGGRMRRALKLGKEMREAGHPWGVETYTSLIAGSIRKRSYSGAWNLWKDMIIWGVRPDAMAYNTMIKLCAETNQYEKAMTFLDDMDMDDH-HPSRITMEGLIRAAA 408
            ++  + QS V  +A++ S   D   + GR  RAL+L  E      P     +TS++AG  R R    AW L+  M +    PD + Y+TMI LCA++ Q EKA++  D +       P+  T+  L+ A A
Sbjct:  209 LFHSLMQSNVA-NAYSLSILCDGLVKHGRTYRALELLDEWTLGTIP--QPAFTSILAGLARVRDTQRAWQLFHRMQMHYTLPDEVTYSTMISLCAQSGQVEKALSLFDQLRASPGMFPTTTTINALLLAMA 336
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BLAST of mRNA_L-elsbetiae_contig8050.17042.1 vs. uniprot
Match: A0A6J1CRU5_MOMCH (pentatricopeptide repeat-containing protein At5g48730, chloroplastic n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CRU5_MOMCH)

HSP 1 Score: 57.8 bits (138), Expect = 5.330e-7
Identity = 39/138 (28.26%), Postives = 71/138 (51.45%), Query Frame = 1 
Query:   16 QVWSEMTQSGVKPSAHAWSSRVDAHARGGRMRRALKLGKEMREAG--HPWGVETYTSLIAGSIRKRSYSGAWNLWKDMIIWGVRPDAMAYNTMIKLCAETNQYEKAMTFLDDMDMDDH-HPSRITMEGLIRAAATAPQ 420
            +++ EM   G + S  ++++ + A++R G + +A  L  EMR +    P  V TY+ LI   ++  ++  A  L  DM+I G++P+ + YNT I    +   + +  + L +M  DD   P   TM   +RA  ++ Q
Sbjct:  167 ELFHEMIDEGCEVSQESYTALLSAYSRSGLLDKAFSLLDEMRNSPDCQP-DVHTYSILIKSCLQVFAFKKAQALLSDMVIRGIKPNTITYNTFIDAYGKAKMFAEMESILMEMLSDDGCKPDVWTMNSTLRAFGSSGQ 303
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BLAST of mRNA_L-elsbetiae_contig8050.17042.1 vs. uniprot
Match: A0A6A2YT89_HIBSY (Pentatricopeptide repeat-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YT89_HIBSY)

HSP 1 Score: 52.0 bits (123), Expect = 5.660e-5
Identity = 30/94 (31.91%), Postives = 49/94 (52.13%), Query Frame = 1 
Query:   79 VDAHARGGRMRRA----LKLGKEMREAGHPWGVETYTSLIAGSIRKRSYSGAWNLWKDMIIWGVRPDAMAYNTMIKLCAETNQYEKAMTFLDDM 348
            +DA    G +RRA     + G  +RE G P  + TY  L+ G I       A NL +++++ G++PD + YNT+I  C +    + A+ F  +M
Sbjct:  219 LDALIEAGDLRRANGLLARYGFRLREGGSP-SILTYNLLMKGYISTGCPQAAINLHEEILLLGLKPDRLTYNTLIFACVKAESLDAAIRFFQEM 311
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8050.17042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1Y2HV25_9FUNG8.800e-832.82Uncharacterized protein n=1 Tax=Catenaria anguillu... [more]
A0A6J1CRU5_MOMCH5.330e-728.26pentatricopeptide repeat-containing protein At5g48... [more]
A0A6A2YT89_HIBSY5.660e-531.91Pentatricopeptide repeat-containing protein n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8050contigL-elsbetiae_contig8050:7881..8833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score70.9
Seed ortholog evalue5.2e-10
Seed eggNOG ortholog29176.XP_003882067.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pentacotripeptide-repeat region of PRORP
EggNOG OGs3YBDH@5794,3YJNY@5796,3YV0V@5809,KOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelSarcocystidae
Best eggNOG OGNA|NA|NA
Exons2
Model size426
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8050.17042.1prot_L-elsbetiae_contig8050.17042.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8050 7911..8833 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.0590935-UTR-L-elsbetiae_contig8050:7880..79101622816890.0590935-UTR-L-elsbetiae_contig8050:7880..7910Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8050 7881..7910 +
1691683890.0999415-UTR-L-elsbetiae_contig8050:7880..79101691683890.0999415-UTR-L-elsbetiae_contig8050:7880..7910Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8050 7881..7910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.0723178-CDS-L-elsbetiae_contig8050:7910..80981622816890.0723178-CDS-L-elsbetiae_contig8050:7910..8098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8050 7911..8098 +
1691683890.112099-CDS-L-elsbetiae_contig8050:7910..80981691683890.112099-CDS-L-elsbetiae_contig8050:7910..8098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8050 7911..8098 +
1622816890.0842526-CDS-L-elsbetiae_contig8050:8625..88331622816890.0842526-CDS-L-elsbetiae_contig8050:8625..8833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8050 8626..8833 +
1691683890.123653-CDS-L-elsbetiae_contig8050:8625..88331691683890.123653-CDS-L-elsbetiae_contig8050:8625..8833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8050 8626..8833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8050.17042.1

>prot_L-elsbetiae_contig8050.17042.1 ID=prot_L-elsbetiae_contig8050.17042.1|Name=mRNA_L-elsbetiae_contig8050.17042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MTQSGVKPSAHAWSSRVDAHARGGRMRRALKLGKEMREAGHPWGVETYTS
LIAGSIRKRSYSGAWNLWKDMIIWGVRPDAMAYNTMIKLCAETNQYEKAM
TFLDDMDMDDHHPSRITMEGLIRAAATAPQWI
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mRNA from alignment at L-elsbetiae_contig8050:7881..8833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8050.17042.1 ID=mRNA_L-elsbetiae_contig8050.17042.1|Name=mRNA_L-elsbetiae_contig8050.17042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=953bp|location=Sequence derived from alignment at L-elsbetiae_contig8050:7881..8833+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCGCCGCCGCCGCAGGTGTGGTCGGAGATGACCCAAAGCGGCGTCAA
GCCCTCGGCGCACGCTTGGTCCTCCCGCGTCGACGCCCACGCGAGGGGGG
GCCGCATGCGCCGCGCCCTCAAGCTGGGAAAGGAGATGCGCGAGGCCGGG
CACCCGTGGGGCGTGGAGACGTACACGTCGCTCATCGCCGGCTCTATCCG
CAAGCGGAGCTACTCCGGGTGAGTTGAGAGTATATCCCGTAGATGATAGT
ATGTAGAAGTGCATATATTACCCCCACGCTCACCACGACCCCCCTCTACT
GAACTCATTTTCGGAGTTCGATGCCTATGTATGTATACGCCACACAAAAG
CTGGCGTGCACCCCCACCCCCACGCTCACCACGACCCCCCTCTGCCTGAA
GTCATTTTCGGAGTTCGATTCCGATGTAAATATACGCAACACAAAAGCTG
GCGTGCGCACCCCCACCCGCCATCCCGCCCGCCCGTGCCAATTTCCGACG
TGGTTCACGGGTTATTCACTCGCTTTAGATAGATGTAGGCACTTGTTTGG
CCGGCTCTACCCGCAAGCGGGATTACTCCGGGGGTGAGTTGATAATTCGT
CCCCGTAGATGATAATATATGTATACTTCGAAGTGTACCACCCCCACCAT
CACCACGACCCCCCCCCCACCGCGCCAGCCGCTCGCCGTGTGCCCACTGC
TACTGCTGTCGTTCGGTGCTGTTTTTTTATTGACCGGTTTGTTAGGGCGT
GGAACCTGTGGAAGGACATGATCATTTGGGGTGTGCGGCCGGACGCGATG
GCGTACAACACCATGATCAAGCTCTGCGCCGAGACGAACCAGTACGAGAA
AGCCATGACCTTCCTCGACGACATGGACATGGACGACCACCACCCCTCCA
GGATCACGATGGAGGGGCTGATCAGGGCTGCAGCGACGGCGCCGCAGTGG
ATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8050:7881..8833+

>mRNA_L-elsbetiae_contig8050.17042.1 ID=mRNA_L-elsbetiae_contig8050.17042.1|Name=mRNA_L-elsbetiae_contig8050.17042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig8050:7881..8833+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCCAAAGCGGCGTCAAGCCCTCGGCGCACGCTTGGTCCTCCCGCGT
CGACGCCCACGCGAGGGGGGGCCGCATGCGCCGCGCCCTCAAGCTGGGAA
AGGAGATGCGCGAGGCCGGGCACCCGTGGGGCGTGGAGACGTACACGTCG
CTCATCGCCGGCTCTATCCGCAAGCGGAGCTACTCCGGATGACCCAAAGC
GGCGTCAAGCCCTCGGCGCACGCTTGGTCCTCCCGCGTCGACGCCCACGC
GAGGGGGGGCCGCATGCGCCGCGCCCTCAAGCTGGGAAAGGAGATGCGCG
AGGCCGGGCACCCGTGGGGCGTGGAGACGTACACGTCGCTCATCGCCGGC
TCTATCCGCAAGCGGAGCTACTCCGGGGCGTGGAACCTGTGGAAGGACAT
GATCATTTGGGGTGTGCGGCCGGACGCGATGGCGTACAACACCATGATCA
AGCTCTGCGCCGAGACGAACCAGTACGAGAAAGCCATGACCTTCCTCGAC
GACATGGACATGGACGACCACCACCCCTCCAGGATCACGATGGAGGGGCT
GATCAGGGCTGCAGCGACGGCGCCGCAGTGGATCGGCGTGGAACCTGTGG
AAGGACATGATCATTTGGGGTGTGCGGCCGGACGCGATGGCGTACAACAC
CATGATCAAGCTCTGCGCCGAGACGAACCAGTACGAGAAAGCCATGACCT
TCCTCGACGACATGGACATGGACGACCACCACCCCTCCAGGATCACGATG
GAGGGGCTGATCAGGGCTGCAGCGACGGCGCCGCAGTGGATC
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