prot_L-elsbetiae_contig8050.17042.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8050.17042.1
Unique Nameprot_L-elsbetiae_contig8050.17042.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length132
Homology
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BLAST of mRNA_L-elsbetiae_contig8050.17042.1 vs. uniprot
Match: A0A1Y2HV25_9FUNG (Uncharacterized protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HV25_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 4.160e-7
Identity = 40/119 (33.61%), Postives = 60/119 (50.42%), Query Frame = 0 
Query:    9 SAHAWSSRVDAHARGGRMRRALKLGKEMREAGHPWGVETYTSLIAGSIRKRSYSGAWNLWKDMIIWGVRPDAMAYNTMIKLCAETNQYEKAMTFLDDMDMDDH-HPSRITMEGLIRAAA 126
            +A++ S   D   + GR  RAL+L  E      P     +TS++AG  R R    AW L+  M +    PD + Y+TMI LCA++ Q EKA++  D +       P+  T+  L+ A A
Sbjct:  220 NAYSLSILCDGLVKHGRTYRALELLDEWTLGTIP--QPAFTSILAGLARVRDTQRAWQLFHRMQMHYTLPDEVTYSTMISLCAQSGQVEKALSLFDQLRASPGMFPTTTTINALLLAMA 336
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BLAST of mRNA_L-elsbetiae_contig8050.17042.1 vs. uniprot
Match: A0A6J1CRU5_MOMCH (pentatricopeptide repeat-containing protein At5g48730, chloroplastic n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CRU5_MOMCH)

HSP 1 Score: 53.1 bits (126), Expect = 1.630e-5
Identity = 38/133 (28.57%), Postives = 67/133 (50.38%), Query Frame = 0 
Query:    1 MTQSGVKPSAHAWSSRVDAHARGGRMRRALKLGKEMREAG--HPWGVETYTSLIAGSIRKRSYSGAWNLWKDMIIWGVRPDAMAYNTMIKLCAETNQYEKAMTFLDDMDMDDH-HPSRITMEGLIRAAATAPQ 130
            M   G + S  ++++ + A++R G + +A  L  EMR +    P  V TY+ LI   ++  ++  A  L  DM+I G++P+ + YNT I    +   + +  + L +M  DD   P   TM   +RA  ++ Q
Sbjct:  172 MIDEGCEVSQESYTALLSAYSRSGLLDKAFSLLDEMRNSPDCQP-DVHTYSILIKSCLQVFAFKKAQALLSDMVIRGIKPNTITYNTFIDAYGKAKMFAEMESILMEMLSDDGCKPDVWTMNSTLRAFGSSGQ 303
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BLAST of mRNA_L-elsbetiae_contig8050.17042.1 vs. uniprot
Match: A0A6A2YT89_HIBSY (Pentatricopeptide repeat-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YT89_HIBSY)

HSP 1 Score: 52.0 bits (123), Expect = 4.260e-5
Identity = 30/94 (31.91%), Postives = 49/94 (52.13%), Query Frame = 0 
Query:   17 VDAHARGGRMRRA----LKLGKEMREAGHPWGVETYTSLIAGSIRKRSYSGAWNLWKDMIIWGVRPDAMAYNTMIKLCAETNQYEKAMTFLDDM 106
            +DA    G +RRA     + G  +RE G P  + TY  L+ G I       A NL +++++ G++PD + YNT+I  C +    + A+ F  +M
Sbjct:  219 LDALIEAGDLRRANGLLARYGFRLREGGSP-SILTYNLLMKGYISTGCPQAAINLHEEILLLGLKPDRLTYNTLIFACVKAESLDAAIRFFQEM 311
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8050.17042.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1Y2HV25_9FUNG4.160e-733.61Uncharacterized protein n=1 Tax=Catenaria anguillu... [more]
A0A6J1CRU5_MOMCH1.630e-528.57pentatricopeptide repeat-containing protein At5g48... [more]
A0A6A2YT89_HIBSY4.260e-531.91Pentatricopeptide repeat-containing protein n=2 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..131
e-value: 5.4E-28
score: 100.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 12..42
e-value: 0.0022
score: 16.1
coord: 82..114
e-value: 9.5E-7
score: 26.6
coord: 47..80
e-value: 1.4E-5
score: 22.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 45..91
e-value: 4.6E-11
score: 42.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 12..40
e-value: 2.4E-4
score: 21.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 79..113
score: 10.095
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 8.78
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..78
score: 9.536
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 5..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8050contigL-elsbetiae_contig8050:7911..8833 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8050.17042.1mRNA_L-elsbetiae_contig8050.17042.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8050 7881..8833 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8050.17042.1 ID=prot_L-elsbetiae_contig8050.17042.1|Name=mRNA_L-elsbetiae_contig8050.17042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MTQSGVKPSAHAWSSRVDAHARGGRMRRALKLGKEMREAGHPWGVETYTS
LIAGSIRKRSYSGAWNLWKDMIIWGVRPDAMAYNTMIKLCAETNQYEKAM
TFLDDMDMDDHHPSRITMEGLIRAAATAPQWI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat