mRNA_L-elsbetiae_contig8039.17027.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8039.17027.1
Unique NamemRNA_L-elsbetiae_contig8039.17027.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8039.17027.1 vs. uniprot
Match: D7G2D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D0_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 7.550e-58
Identity = 84/134 (62.69%), Postives = 108/134 (80.60%), Query Frame = 1 
Query:    1 QTVWQTFAVALYCFFFMAPFLHVAYDALENWMPTEKSSACAIAQVGIDVFVLDPILAISFIVLVGIFEGQSLTEEIVPTIKADFLSLLYWLLATGVLMAPAQVYLFKRFALKWRVLIGDGKNLVWNIIACFVVE 402
            + VW+T+AVA+YCFFF+APFLHV YDALE W+P +KS A AIAQV ID  V++  L ++FIV+VG  EG++  E+IVPTIK+D+L+L+ WL+ T ++M PAQVYLF  F LKWRVLI DGK L+WN IACF+VE
Sbjct:    2 KAVWETWAVAIYCFFFVAPFLHVVYDALEKWIPADKSQANAIAQVTIDSLVVETFLGLTFIVMVGFLEGETWEEDIVPTIKSDYLTLVVWLMVTNMVMGPAQVYLFVHFPLKWRVLIADGKGLLWNFIACFIVE 135
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BLAST of mRNA_L-elsbetiae_contig8039.17027.1 vs. uniprot
Match: D8LMD8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD8_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 3.140e-40
Identity = 66/133 (49.62%), Postives = 96/133 (72.18%), Query Frame = 1 
Query:    1 QTVWQTFAVALYCFFFMAPFLHVAYDALENWMPTEKSSACAIAQVGIDVFVLDPILAISFIVLVGIFEGQSLTEEIVPTIKADFLSLLYWLLATGVLMAPAQVYLFKRFALKWRVLIGDGKNLVWNIIACFVV 399
              V Q+ AVA+  F   AP LH+AY AL+ W+P E+S A A+AQV +DV VLDPI  + F+V  G+ EG+S ++EI+ TI+ D+++L++WL+  G+ +AP QVY F RF +KWRVLI DG +++W  +ACFV+
Sbjct:  132 NAVRQSLAVAIDGFCVSAPLLHLAYGALDRWLPAEESKAYALAQVLVDVLVLDPIFGLLFMVTTGLLEGRSFSQEIIRTIEDDYVTLVFWLVVIGLALAPLQVYTFNRFPVKWRVLISDGMDVLWTFVACFVI 264
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8039.17027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2D0_ECTSI7.550e-5862.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMD8_ECTSI3.140e-4049.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8039contigL-elsbetiae_contig8039:6673..7077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue3.3e-20
Seed eggNOG ortholog2880.D8LMD9
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-16_001600.1
Exons1
Model size405
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.9067822-CDS-L-elsbetiae_contig8039:6672..70771622816888.9067822-CDS-L-elsbetiae_contig8039:6672..7077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8039 6673..7077 -
1691683889.1847618-CDS-L-elsbetiae_contig8039:6672..70771691683889.1847618-CDS-L-elsbetiae_contig8039:6672..7077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8039 6673..7077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8039.17027.1prot_L-elsbetiae_contig8039.17027.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8039 6673..7077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8039.17027.1

>prot_L-elsbetiae_contig8039.17027.1 ID=prot_L-elsbetiae_contig8039.17027.1|Name=mRNA_L-elsbetiae_contig8039.17027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
QTVWQTFAVALYCFFFMAPFLHVAYDALENWMPTEKSSACAIAQVGIDVF
VLDPILAISFIVLVGIFEGQSLTEEIVPTIKADFLSLLYWLLATGVLMAP
AQVYLFKRFALKWRVLIGDGKNLVWNIIACFVVE*
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mRNA from alignment at L-elsbetiae_contig8039:6673..7077-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8039.17027.1 ID=mRNA_L-elsbetiae_contig8039.17027.1|Name=mRNA_L-elsbetiae_contig8039.17027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=405bp|location=Sequence derived from alignment at L-elsbetiae_contig8039:6673..7077- (Laminarionema elsbetiae ELsaHSoW15)
CAGACCGTGTGGCAGACCTTCGCCGTCGCGCTCTACTGCTTCTTCTTCAT
GGCCCCCTTCCTCCACGTCGCGTACGACGCGCTGGAAAACTGGATGCCCA
CCGAGAAAAGCTCGGCTTGCGCCATCGCCCAAGTGGGCATCGATGTGTTC
GTTCTAGACCCCATTTTAGCGATAAGTTTCATCGTGTTGGTTGGAATCTT
TGAGGGTCAGTCCCTCACAGAGGAAATCGTTCCCACGATCAAGGCTGACT
TCTTGAGCCTGCTTTACTGGCTCTTGGCGACGGGTGTGTTGATGGCCCCG
GCCCAGGTGTACTTGTTCAAGCGCTTCGCGTTGAAATGGCGTGTTCTAAT
CGGCGACGGAAAAAATCTCGTGTGGAATATCATAGCGTGCTTTGTTGTGG
AGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8039:6673..7077-

>mRNA_L-elsbetiae_contig8039.17027.1 ID=mRNA_L-elsbetiae_contig8039.17027.1|Name=mRNA_L-elsbetiae_contig8039.17027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig8039:6673..7077- (Laminarionema elsbetiae ELsaHSoW15)
CAGACCGTGTGGCAGACCTTCGCCGTCGCGCTCTACTGCTTCTTCTTCAT
GGCCCCCTTCCTCCACGTCGCGTACGACGCGCTGGAAAACTGGATGCCCA
CCGAGAAAAGCTCGGCTTGCGCCATCGCCCAAGTGGGCATCGATGTGTTC
GTTCTAGACCCCATTTTAGCGATAAGTTTCATCGTGTTGGTTGGAATCTT
TGAGGGTCAGTCCCTCACAGAGGAAATCGTTCCCACGATCAAGGCTGACT
TCTTGAGCCTGCTTTACTGGCTCTTGGCGACGGGTGTGTTGATGGCCCCG
GCCCAGGTGTACTTGTTCAAGCGCTTCGCGTTGAAATGGCGTGTTCTAAT
CGGCGACGGAAAAAATCTCGTGTGGAATATCATAGCGTGCTTTGTTGTGG
AGTGACAGACCGTGTGGCAGACCTTCGCCGTCGCGCTCTACTGCTTCTTC
TTCATGGCCCCCTTCCTCCACGTCGCGTACGACGCGCTGGAAAACTGGAT
GCCCACCGAGAAAAGCTCGGCTTGCGCCATCGCCCAAGTGGGCATCGATG
TGTTCGTTCTAGACCCCATTTTAGCGATAAGTTTCATCGTGTTGGTTGGA
ATCTTTGAGGGTCAGTCCCTCACAGAGGAAATCGTTCCCACGATCAAGGC
TGACTTCTTGAGCCTGCTTTACTGGCTCTTGGCGACGGGTGTGTTGATGG
CCCCGGCCCAGGTGTACTTGTTCAAGCGCTTCGCGTTGAAATGGCGTGTT
CTAATCGGCGACGGAAAAAATCTCGTGTGGAATATCATAGCGTGCTTTGT
TGTGGAGTGA
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