prot_L-elsbetiae_contig8039.17027.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8039.17027.1
Unique Nameprot_L-elsbetiae_contig8039.17027.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length135
Homology
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BLAST of mRNA_L-elsbetiae_contig8039.17027.1 vs. uniprot
Match: D7G2D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D0_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 7.550e-58
Identity = 84/134 (62.69%), Postives = 108/134 (80.60%), Query Frame = 0 
Query:    1 QTVWQTFAVALYCFFFMAPFLHVAYDALENWMPTEKSSACAIAQVGIDVFVLDPILAISFIVLVGIFEGQSLTEEIVPTIKADFLSLLYWLLATGVLMAPAQVYLFKRFALKWRVLIGDGKNLVWNIIACFVVE 134
            + VW+T+AVA+YCFFF+APFLHV YDALE W+P +KS A AIAQV ID  V++  L ++FIV+VG  EG++  E+IVPTIK+D+L+L+ WL+ T ++M PAQVYLF  F LKWRVLI DGK L+WN IACF+VE
Sbjct:    2 KAVWETWAVAIYCFFFVAPFLHVVYDALEKWIPADKSQANAIAQVTIDSLVVETFLGLTFIVMVGFLEGETWEEDIVPTIKSDYLTLVVWLMVTNMVMGPAQVYLFVHFPLKWRVLIADGKGLLWNFIACFIVE 135
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BLAST of mRNA_L-elsbetiae_contig8039.17027.1 vs. uniprot
Match: D8LMD8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD8_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 3.140e-40
Identity = 66/133 (49.62%), Postives = 96/133 (72.18%), Query Frame = 0 
Query:    1 QTVWQTFAVALYCFFFMAPFLHVAYDALENWMPTEKSSACAIAQVGIDVFVLDPILAISFIVLVGIFEGQSLTEEIVPTIKADFLSLLYWLLATGVLMAPAQVYLFKRFALKWRVLIGDGKNLVWNIIACFVV 133
              V Q+ AVA+  F   AP LH+AY AL+ W+P E+S A A+AQV +DV VLDPI  + F+V  G+ EG+S ++EI+ TI+ D+++L++WL+  G+ +AP QVY F RF +KWRVLI DG +++W  +ACFV+
Sbjct:  132 NAVRQSLAVAIDGFCVSAPLLHLAYGALDRWLPAEESKAYALAQVLVDVLVLDPIFGLLFMVTTGLLEGRSFSQEIIRTIEDDYVTLVFWLVVIGLALAPLQVYTFNRFPVKWRVLISDGMDVLWTFVACFVI 264
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8039.17027.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2D0_ECTSI7.550e-5862.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMD8_ECTSI3.140e-4049.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007248Mpv17/PMP22PFAMPF04117Mpv17_PMP22coord: 65..130
e-value: 2.1E-13
score: 50.2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..44
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 107..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 87..106
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 68..86
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..67
NoneNo IPR availableTMHMMTMhelixcoord: 45..67
NoneNo IPR availableTMHMMTMhelixcoord: 7..25
NoneNo IPR availableTMHMMTMhelixcoord: 84..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8039contigL-elsbetiae_contig8039:6673..7077 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8039.17027.1mRNA_L-elsbetiae_contig8039.17027.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8039 6673..7077 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8039.17027.1 ID=prot_L-elsbetiae_contig8039.17027.1|Name=mRNA_L-elsbetiae_contig8039.17027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
QTVWQTFAVALYCFFFMAPFLHVAYDALENWMPTEKSSACAIAQVGIDVF
VLDPILAISFIVLVGIFEGQSLTEEIVPTIKADFLSLLYWLLATGVLMAP
AQVYLFKRFALKWRVLIGDGKNLVWNIIACFVVE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22