mRNA_L-elsbetiae_contig8038.17026.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8038.17026.1
Unique NamemRNA_L-elsbetiae_contig8038.17026.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8038.17026.1 vs. uniprot
Match: D7G3E1_ECTSI (Similar to camp and camp-inhibited cgmp 3,5-cyclic phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E1_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 4.100e-25
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:   85 MFLRGCKEPLEQYRECLMKNLKDWNGRGLHRGKLAEVKIHQLGQMNITRFDHQK 246
            MFLRGC+EPLEQYRECLMKNLKDW+GRGL R KL+ VKIHQLGQMNITRFDHQK
Sbjct:    1 MFLRGCREPLEQYRECLMKNLKDWHGRGLVRQKLSAVKIHQLGQMNITRFDHQK 54
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BLAST of mRNA_L-elsbetiae_contig8038.17026.1 vs. uniprot
Match: A0A6H5JUX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.870e-17
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:   46 MVMEAGTDLVDPGMFLRGCKEPLEQYRECLMKNLKDWNGR 165
            M  +AGTDLVD GMFLRGC+EP+EQYRECLMKNLKDW+GR
Sbjct:    1 MKKDAGTDLVDAGMFLRGCREPMEQYRECLMKNLKDWHGR 40
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BLAST of mRNA_L-elsbetiae_contig8038.17026.1 vs. uniprot
Match: A0A835ZCA7_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.940e-11
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   67 DLVDPGMFLRGCKEPLEQYRECLMKNLKDWNGRGLHRGKLAEVKIHQLGQMNITRFDHQK 246
            DL+D   FL+     LEQYREC M NL   +GRGL R KLA+V++H L  MNITR DHQK
Sbjct:    4 DLIDVRTFLK--PTGLEQYRECFMTNLWGGDGRGLSRRKLAQVQMHHLPDMNITRHDHQK 61
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8038.17026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3E1_ECTSI4.100e-2588.89Similar to camp and camp-inhibited cgmp 3,5-cyclic... [more]
A0A6H5JUX4_9PHAE1.870e-1782.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCA7_9STRA2.940e-1158.33SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8038contigL-elsbetiae_contig8038:5726..6550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.4e-21
Seed eggNOG ortholog2880.D7G3E1
KEGG rclassRC00296
KEGG koko:K13293
KEGG ReactionR00191
KEGG Pathwayko00230,ko04024,ko05032,map00230,map04024,map05032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3689@1,KOG3689@2759
EC3.1.4.53
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size247
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.8652673-CDS-L-elsbetiae_contig8038:5725..58071622816888.8652673-CDS-L-elsbetiae_contig8038:5725..5807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8038 5726..5807 -
1691683889.1593006-CDS-L-elsbetiae_contig8038:5725..58071691683889.1593006-CDS-L-elsbetiae_contig8038:5725..5807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8038 5726..5807 -
1622816888.8766043-CDS-L-elsbetiae_contig8038:6386..65501622816888.8766043-CDS-L-elsbetiae_contig8038:6386..6550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8038 6387..6550 -
1691683889.1741796-CDS-L-elsbetiae_contig8038:6386..65501691683889.1741796-CDS-L-elsbetiae_contig8038:6386..6550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8038 6387..6550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8038.17026.1prot_L-elsbetiae_contig8038.17026.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8038 5726..6550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8038.17026.1

>prot_L-elsbetiae_contig8038.17026.1 ID=prot_L-elsbetiae_contig8038.17026.1|Name=mRNA_L-elsbetiae_contig8038.17026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
HQRRPDISERKEGMSMVMEAGTDLVDPGMFLRGCKEPLEQYRECLMKNLK
DWNGRGLHRGKLAEVKIHQLGQMNITRFDHQK
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mRNA from alignment at L-elsbetiae_contig8038:5726..6550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8038.17026.1 ID=mRNA_L-elsbetiae_contig8038.17026.1|Name=mRNA_L-elsbetiae_contig8038.17026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=825bp|location=Sequence derived from alignment at L-elsbetiae_contig8038:5726..6550- (Laminarionema elsbetiae ELsaHSoW15)
CATCAGCGCCGTCCAGATATTTCAGAGAGAAAAGAGGGAATGAGCATGGT
CATGGAGGCAGGGACGGATCTCGTCGACCCCGGGATGTTCCTTCGAGGCT
GTAAAGAACCTTTGGAGCAGTACCGGGAGTGCCTAATGAAGAACTTGAAG
GACTGGAATGGGAGGTACGGCACCGTAGTCGTCGTATTGTAATCGTCGTT
TTTCAAAAGCCTGCTTTGCTCTCCTTCGTGCCGATTCCGACAACAAAGTT
TTGTTTGGCACATTTTCGTTGAGAAGTCAAAATCGCGGCACCAGCAACTA
CTGTTCTGTACTGTACATGCGGTAAAGACGGAGGCCCTCTCGAACCTTTG
TATCTAGATAAATTCAATAACTAGATCGAGTGGCAACGCCGACGGCGTTT
CCCATATTGTCGGAGCAAGACTAATGAATACCCCCTACGAACAGTGAGCT
ACAGTACCGTAGTAGATTCGAGCCTCCCGAACCCGGCCGCAGGCAAATCG
CGTGGCTTCGTTCCTATTTCGCAGGGGGGAGGGGGGTGGTAACTGAATGA
GCCCCCGAAACTCGCCTCGTGGTGTAAACCAAACATTCGTAAGTAAGCCT
CTTGGCTGTCGTTCGCAGGGGAGGATACGTAACGTAAACATTGAACACTA
GTTCAAGGCCCATTATTCTGGGGCTCCTTCAGTCATCGTGAAAAATTCCA
CCTGCGCTTATGTATGTATTTATGTGATTCGACGGCCGCTCAGAGGGCTA
CACCGTGGAAAGCTGGCAGAGGTGAAAATACACCAGTTGGGGCAGATGAA
CATCACACGCTTCGACCACCAGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8038:5726..6550-

>mRNA_L-elsbetiae_contig8038.17026.1 ID=mRNA_L-elsbetiae_contig8038.17026.1|Name=mRNA_L-elsbetiae_contig8038.17026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig8038:5726..6550- (Laminarionema elsbetiae ELsaHSoW15)
CATCAGCGCCGTCCAGATATTTCAGAGAGAAAAGAGGGAATGAGCATGGT
CATGGAGGCAGGGACGGATCTCGTCGACCCCGGGATGTTCCTTCGAGGCT
GTAAAGAACCTTTGGAGCAGTACCGGGAGTGCCTAATGAAGAACTTGAAG
GACTGGAATGGGAGCATCAGCGCCGTCCAGATATTTCAGAGAGAAAAGAG
GGAATGAGCATGGTCATGGAGGCAGGGACGGATCTCGTCGACCCCGGGAT
GTTCCTTCGAGGCTGTAAAGAACCTTTGGAGCAGTACCGGGAGTGCCTAA
TGAAGAACTTGAAGGACTGGAATGGGAGAGGGCTACACCGTGGAAAGCTG
GCAGAGGTGAAAATACACCAGTTGGGGCAGATGAACATCACACGCTTCGA
CCACCAGAAGAGGGCTACACCGTGGAAAGCTGGCAGAGGTGAAAATACAC
CAGTTGGGGCAGATGAACATCACACGCTTCGACCACCAGAAG
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