mRNA_L-elsbetiae_contig803.17017.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig803.17017.1
Unique NamemRNA_L-elsbetiae_contig803.17017.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig803.17017.1 vs. uniprot
Match: D7FPP2_ECTSI (Ankyrin repeat domain 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP2_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 5.730e-35
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 2
Query:   89 HGHEGVIELLLKHGADVAAREAWAGRTPLHCACQSGSLKAAVALIVKGGADAHIPDLSAARHTPLEAAVVSGYR 310
            HGH  VIELLL+HGADV AREAWAGRTPLH ACQ+GSLKAA ALI+KGGAD H+PDLSAARHTPLEAAVVSGYR
Sbjct:  120 HGHAEVIELLLRHGADVTAREAWAGRTPLHYACQAGSLKAATALIIKGGADPHVPDLSAARHTPLEAAVVSGYR 193          
BLAST of mRNA_L-elsbetiae_contig803.17017.1 vs. uniprot
Match: A0A1L7WPQ7_9HELO (Uncharacterized protein n=1 Tax=Phialocephala subalpina TaxID=576137 RepID=A0A1L7WPQ7_9HELO)

HSP 1 Score: 60.1 bits (144), Expect = 2.520e-8
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 2
Query:   17 LLKNGLDPNEKGIRRETPLHQASRHGHEGVIELLLKHGADVAAREAWAGRTPLHCACQS 193
            LL +G + NE     ETPLH+A   GHE V+ LLLKH ADV A++   GRTPLH A +S
Sbjct:  590 LLSDGFEANENSGSYETPLHRAVIRGHEDVVILLLKHRADVNAKDI-VGRTPLHYAMES 647          
BLAST of mRNA_L-elsbetiae_contig803.17017.1 vs. uniprot
Match: A0A1W0A931_9STRA (Regulator of chromosome condensation (RCC1) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A931_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.690e-8
Identity = 29/77 (37.66%), Postives = 52/77 (67.53%), Query Frame = 2
Query:    5 IMQILLKNGLDPNEKGIRRETPLHQASRHGHEGVIELLLKHGADVAAREAWAGRTPLHCACQSGSLKAAVALIVKGG 235
            +++ LL++G++ NE+    ETPLH A+  G++ +I+LLL++GAD    +  +G TPLH +   G + A++ L++ GG
Sbjct:   27 LVEALLRDGVNVNERNSLGETPLHLAAGRGYDEIIDLLLRYGADPHVHDWESGYTPLHRSLLQGHINASL-LLLNGG 102          
BLAST of mRNA_L-elsbetiae_contig803.17017.1 vs. uniprot
Match: A0A024U6F7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6F7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.780e-8
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 AIMQILLKNGLDPNEKGIRRETPLHQASRHGHEGVIELLLKHGADVAAREAWAGRTPLHCACQSGSLKAAVALIVKGGA 238
            A+ ++L   G+  +E+    ETPLH A+  G EG+++LLL+HGAD  A++  +G TPLH +   G + A++ L++ GGA
Sbjct:   29 AVERLLEDGGVLVDERNNLGETPLHIAASRGLEGLVDLLLRHGADPNAQDEESGYTPLHRSFLHGHVDASL-LLLNGGA 106          
BLAST of mRNA_L-elsbetiae_contig803.17017.1 vs. uniprot
Match: A0A3E2HFL0_SCYLI (Uncharacterized protein (Fragment) n=1 Tax=Scytalidium lignicola TaxID=5539 RepID=A0A3E2HFL0_SCYLI)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-7
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 2
Query:    2 AIMQILLKNGLDPNEKGIRRETPLHQASRHGHEGVIELLL-KHGADVAAREAWAGRTPLHCACQSGSLKAAVALIVKGGADAHIPD 256
             I+Q+LLK G+D NE+  R  T LH A+  G +GV+ LL+ K   +   + +W  RTPLH A    +    V L+V+ GAD  I D
Sbjct:  284 GIVQLLLKKGVDANERDDRGWTALHWATSLGWKGVVRLLIRKENVEKNCQASWDRRTPLHLAAAESN-PTLVKLLVESGADVDICD 368          
BLAST of mRNA_L-elsbetiae_contig803.17017.1 vs. uniprot
Match: A0A2I2FD85_9EURO (Ankyrin repeat-containing domain protein n=1 Tax=Aspergillus candidus TaxID=41067 RepID=A0A2I2FD85_9EURO)

HSP 1 Score: 57.4 bits (137), Expect = 1.750e-7
Identity = 36/100 (36.00%), Postives = 52/100 (52.00%), Query Frame = 2
Query:    5 IMQILLKNGLDPNEKGIRRETPLHQASRHGHEGVIELLLKHGADVAAREAWAGRTPLHCACQSGSLKAAVALIVKGGADAHIPDLSAARHTPLEAAVVSG 304
            ++ +LL NG D + +G    TPL  A   GH G+I+ L++ GA++ A+   +G T LH   Q G     + L+V  GAD +I     A   PL  A  SG
Sbjct:   52 LIHLLLANGADIDARGPDGATPLMFAVAQGHHGLIQHLVRGGANLNAQTTTSGGTALHVVAQHGLEVTTLQLLVDHGADINIRCHQPAGEVPLHRAAFSG 151          
BLAST of mRNA_L-elsbetiae_contig803.17017.1 vs. uniprot
Match: UPI001EE580A7 (ankyrin repeat domain-containing protein 50-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE580A7)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-6
Identity = 34/103 (33.01%), Postives = 53/103 (51.46%), Query Frame = 2
Query:    2 AIMQILLKNGLDPNEKGIRRETPLHQASRHGHEGVIELLLKHGADVAAREAWAGRTPLHCACQSGSLKAAVALIVKGGADAHIPDLSAARHTPLEAAVVSGYR 310
             +  IL +  +D N +G  ++TP+  A   GH+GV+ELL+K GAD++     +G   LH AC SG       ++     D  I      + TP+ AA V G++
Sbjct:  111 VVKYILSQEMVDINSRGYGKKTPVMVAGEEGHKGVVELLVKFGADLSLNGK-SGSNILHYACSSGQFDVVKYVLSLNEVD--IDSRGWKKRTPVMAAAVKGHK 210          
BLAST of mRNA_L-elsbetiae_contig803.17017.1 vs. uniprot
Match: A0A6I9Z0V4_9SAUR (ankyrin repeat domain-containing protein 27-like n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9Z0V4_9SAUR)

HSP 1 Score: 53.5 bits (127), Expect = 2.660e-6
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 2
Query:   17 LLKNGLDPNEKGIRRETPLHQASRHGHEGVIELLLKHGADVAAREA-WAGRTPLHCACQSG 196
            L  NGL  N       TPLH A+ HGH  ++ LLLKHGA++ A++   AG  PLH ACQ+G
Sbjct:  119 LPSNGLGVNVTNQTGLTPLHVAALHGHVDLVALLLKHGANIEAKDVNQAG--PLHFACQNG 177          
BLAST of mRNA_L-elsbetiae_contig803.17017.1 vs. uniprot
Match: UPI001EE50034 (ankyrin repeat domain-containing protein 50-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE50034)

HSP 1 Score: 53.9 bits (128), Expect = 3.410e-6
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 2
Query:    2 AIMQILLKNGLDPNEKGIRRETPLHQASRHGHEGVIELLLKHGADVAAREAWAGRTPLHCACQSG 196
             +  +L    +D N +G+++ TPL  A+  GH+ V+ELL+KHGAD+  R+   G   LH AC  G
Sbjct:  178 VVKYLLSLTSVDINSRGLQKRTPLMVAAEQGHKEVVELLVKHGADLFLRDEH-GDNALHRACYPG 241          
BLAST of mRNA_L-elsbetiae_contig803.17017.1 vs. uniprot
Match: UPI001EE542BC (ankyrin repeat domain-containing protein 50-like n=2 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE542BC)

HSP 1 Score: 53.1 bits (126), Expect = 6.440e-6
Identity = 29/103 (28.16%), Postives = 54/103 (52.43%), Query Frame = 2
Query:    2 AIMQILLKNGLDPNEKGIRRETPLHQASRHGHEGVIELLLKHGADVAAREAWAGRTPLHCACQSGSLKAAVALIVKGGADAHIPDLSAARHTPLEAAVVSGYR 310
             +  +L  N +D N +G ++ TP+  A   G + ++ELL+KHGAD++ R   AG   L+ AC+ G ++    ++     D +   +   + TP+  A   G++
Sbjct:  312 VVKYLLSLNSVDINSRGYKKRTPVMTAGERGKKKIVELLVKHGADLSHRAPLAGNI-LNLACRGGKIEVVKYVLSLNTVDINTRGIK--KRTPVMIAAAHGHK 411          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig803.17017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPP2_ECTSI5.730e-3586.49Ankyrin repeat domain 3 n=1 Tax=Ectocarpus silicul... [more]
A0A1L7WPQ7_9HELO2.520e-854.24Uncharacterized protein n=1 Tax=Phialocephala suba... [more]
A0A1W0A931_9STRA4.690e-837.66Regulator of chromosome condensation (RCC1) n=1 Ta... [more]
A0A024U6F7_9STRA8.780e-840.51Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A3E2HFL0_SCYLI1.140e-740.70Uncharacterized protein (Fragment) n=1 Tax=Scytali... [more]
A0A2I2FD85_9EURO1.750e-736.00Ankyrin repeat-containing domain protein n=1 Tax=A... [more]
UPI001EE580A71.390e-633.01ankyrin repeat domain-containing protein 50-like n... [more]
A0A6I9Z0V4_9SAUR2.660e-649.18ankyrin repeat domain-containing protein 27-like n... [more]
UPI001EE500343.410e-640.00ankyrin repeat domain-containing protein 50-like n... [more]
UPI001EE542BC6.440e-628.16ankyrin repeat domain-containing protein 50-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig803contigL-elsbetiae_contig803:1052..1965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue3.2e-28
Seed eggNOG ortholog2880.D7FPP2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-16_001240.1
Exons3
Model size311
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig803.17017.1prot_L-elsbetiae_contig803.17017.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig803 1059..1965 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.1821678-UTR-L-elsbetiae_contig803:1051..10581622816888.1821678-UTR-L-elsbetiae_contig803:1051..1058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig803 1052..1058 +
1691683888.645903-UTR-L-elsbetiae_contig803:1051..10581691683888.645903-UTR-L-elsbetiae_contig803:1051..1058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig803 1052..1058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.1947021-CDS-L-elsbetiae_contig803:1058..11381622816888.1947021-CDS-L-elsbetiae_contig803:1058..1138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig803 1059..1138 +
1691683888.656869-CDS-L-elsbetiae_contig803:1058..11381691683888.656869-CDS-L-elsbetiae_contig803:1058..1138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig803 1059..1138 +
1622816888.2070367-CDS-L-elsbetiae_contig803:1326..14441622816888.2070367-CDS-L-elsbetiae_contig803:1326..1444Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig803 1327..1444 +
1691683888.6661391-CDS-L-elsbetiae_contig803:1326..14441691683888.6661391-CDS-L-elsbetiae_contig803:1326..1444Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig803 1327..1444 +
1622816888.2193687-CDS-L-elsbetiae_contig803:1860..19651622816888.2193687-CDS-L-elsbetiae_contig803:1860..1965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig803 1861..1965 +
1691683888.6754735-CDS-L-elsbetiae_contig803:1860..19651691683888.6754735-CDS-L-elsbetiae_contig803:1860..1965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig803 1861..1965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig803.17017.1

>prot_L-elsbetiae_contig803.17017.1 ID=prot_L-elsbetiae_contig803.17017.1|Name=mRNA_L-elsbetiae_contig803.17017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MQILLKNGLDPNEKGIRRETPLHQASRHGHEGVIELLLKHGADVAAREAW
AGRTPLHCACQSGSLKAAVALIVKGGADAHIPDLSAARHTPLEAAVVSGY
R
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mRNA from alignment at L-elsbetiae_contig803:1052..1965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig803.17017.1 ID=mRNA_L-elsbetiae_contig803.17017.1|Name=mRNA_L-elsbetiae_contig803.17017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=914bp|location=Sequence derived from alignment at L-elsbetiae_contig803:1052..1965+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGATCATGCAAATTCTCTTGAAAAACGGGCTAGACCCTAACGAAAAAG GAATCAGGAGGGAAACACCTCTTCATCAAGCGTCTAGGTATATACCCGAG AAATAAGATGCGACTGCTCATTTAATTTTTGCACAGATCAAGTATGTGCC TGCCTGTATGCGGTTTCGGGCCCACGGTAGGTAGACATAAAATATGCGCG TAGGAGCACCCATTGCCCAACCCTCCTAAAATTTCCCGACTAATCTGGCC GTCGATTTTTTCGCTTTTGTCTCAGGCACGGGCATGAAGGAGTGATCGAG CTCCTATTGAAGCATGGGGCGGACGTGGCTGCGAGAGAGGCGTGGGCTGG CCGAACCCCTCTTCACTGCGCTTGCCAATCGGGCTCTCTGAAGGTTTGCC TCTCGCGTTGTAGCTCTACTTGTATCATGCGGGTCCACGCCTTGTAAAAT GCAGCCAAACAACGAAACAAGCGTCGGTGCCGCGCAAACAATGGCCCCCT GGACTCTGGTTACTTCGGCACGCGGCAGAACGCGACGCCTCGCGCGATCT GAAAGCGTATCATATAACTACCGTGGACAAAGGTGCCTCCAAGGTGTATT TTTGACACGACTAGCGGCCCCGCGTGGCTTACCGCACATGGTGAACCTTT AAAAAAAAGCTGCCACCTCTATTTTCCCGAAATAATTACAGATACAACCC CGACAACGAAATAAGACATTTTTGCTTCACCTCCAACGCGTAGGCCGCGG CTAAACCATTGCCCCCTTCTTGCCGCCGCCCTGGTTTGCTCGACACACGC ACGCTGCAGGCGGCAGTCGCTCTGATTGTCAAGGGTGGGGCAGACGCCCA CATCCCGGACCTTTCGGCCGCAAGACACACCCCGCTCGAGGCTGCTGTGG TGTCCGGATACAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig803:1052..1965+

>mRNA_L-elsbetiae_contig803.17017.1 ID=mRNA_L-elsbetiae_contig803.17017.1|Name=mRNA_L-elsbetiae_contig803.17017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig803:1052..1965+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAATTCTCTTGAAAAACGGGCTAGACCCTAACGAAAAAGGAATCAG
GAGGGAAACACCTCTTCATCAAGCGTCTAGATGCAAATTCTCTTGAAAAA
CGGGCTAGACCCTAACGAAAAAGGAATCAGGAGGGAAACACCTCTTCATC
AAGCGTCTAGGCACGGGCATGAAGGAGTGATCGAGCTCCTATTGAAGCAT
GGGGCGGACGTGGCTGCGAGAGAGGCGTGGGCTGGCCGAACCCCTCTTCA
CTGCGCTTGCCAATCGGGCTCTCTGAAGGCACGGGCATGAAGGAGTGATC
GAGCTCCTATTGAAGCATGGGGCGGACGTGGCTGCGAGAGAGGCGTGGGC
TGGCCGAACCCCTCTTCACTGCGCTTGCCAATCGGGCTCTCTGAAGGCGG
CAGTCGCTCTGATTGTCAAGGGTGGGGCAGACGCCCACATCCCGGACCTT
TCGGCCGCAAGACACACCCCGCTCGAGGCTGCTGTGGTGTCCGGATACAG
AGCGGCAGTCGCTCTGATTGTCAAGGGTGGGGCAGACGCCCACATCCCGG
ACCTTTCGGCCGCAAGACACACCCCGCTCGAGGCTGCTGTGGTGTCCGGA
TACAGA
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