mRNA_L-elsbetiae_contig8023.17008.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI) HSP 1 Score: 276 bits (707), Expect = 2.030e-79 Identity = 200/377 (53.05%), Postives = 219/377 (58.09%), Query Frame = 2 Query: 308 MTSTAIFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAAD------------DRPETVTAADPAGRCLAALVAGCQLVVLPALRH--SRTLLKEKQS--------------------LCACFGMSTVSSFVTCFFIICDL--------------------------------------------------LVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186 MTSTAI+TCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKAS LELYRVH DD + XXXXXXXXXXXXXXXXXXX A+G+YLELAGTFPLAGNIT+LA+IP DIL V+FG AKMALVAYD++LGRLET+SIHNFDAGAIGPGA DRP T++++DPAGRCLAA+VAGCQLVVLPA RH + E+ A G S L A + FIKAAAFLEGFHEP LALLYEPIQTCAGRLASKRSTCRL + SINL Q P Sbjct: 1 MTSTAIYTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASTLELYRVHRDDHSXXXXXXXXXXXXXXXXXXXXXXXX---------------ASGYYLELAGTFPLAGNITALAVIP------DILVVSFGVAKMALVAYDSVLGRLETISIHNFDAGAIGPGAGGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARRHVPGSVFVSEEAKRXXXXXXXXXXXXXXXXXXXXAAGAGESAAGGVAXXXXXXXXXXXXXXXXXSVSARESDSEGEEDGGLGNGATAKGDGGAGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAP 356
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A7K9T8I3_9AVES (CPSF1 factor (Fragment) n=1 Tax=Galbula dea TaxID=1109041 RepID=A0A7K9T8I3_9AVES) HSP 1 Score: 127 bits (319), Expect = 3.560e-28 Identity = 93/288 (32.29%), Postives = 138/288 (47.92%), Query Frame = 2 Query: 323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186 ++ Y+Q HPPTG++ A+F ++ R+LVVA S L++YR++HD A LEL TF GN+ S+A + + ++D L ++F DAK+++V YD L+T+S+H F+ + G + DP GRC L+ G +LVVLP R S L E + L G SSF+ + I D+ L I FL G++EPTL +LYEP QT GR+A ++ TC +V S+N+ Q P Sbjct: 1 MYAVYKQAHPPTGLEFAIFCHFFSSTERNLVVAGTSQLQVYRLNHDCETGAKGDRNGEGKGHREK----------------------------LELLATFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQNVHIPQVRVDPDGRCAVMLIYGTRLVVLPFRRDS--LADEHEGL---VGEGQKSSFLPSYII--DVRELDEKLLNIIDMQFLYGYYEPTLLILYEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 253
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: S4RE76_PETMA (Cleavage and polyadenylation specific factor 1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RE76_PETMA) HSP 1 Score: 126 bits (316), Expect = 5.450e-28 Identity = 94/290 (32.41%), Postives = 140/290 (48.28%), Query Frame = 2 Query: 323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVPFL 1192 +++ +R++HPPTG++HAV+ ++ R+LVVA S L++YR+ HD TE+ LE +F L GNI S+A + + +D L +AF DAK+++V YD L+T+S+H F+ I G + V DP RC A LV G +LVVLP R TL E + G+S + DL L + FL G++EPTL +L+EP QT GR+A ++ TC +V S+N+AQ P + Sbjct: 1 MYSVHRKVHPPTGLEHAVYCHFFSSQERNLVVAGGSQLQIYRLIHD-----TESVSKGDKPTDGKPRKDK-----------------------LEFMSSFSLFGNIMSMASVRLSGSSRDALLLAFMDAKLSVVEYDPATHDLKTLSLHYFEEDEIKDGFHGNVHVPVVRVDPDARCAAMLVYGTRLVVLPFRRE--TLADEAEG-----GVSEGQKPSLLPSYVIDLRGLDEKLLNVLDMQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCGIVAISLNIAQRVHPII 255
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: UPI0009A38663 (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A38663) HSP 1 Score: 125 bits (314), Expect = 8.100e-28 Identity = 90/288 (31.25%), Postives = 138/288 (47.92%), Query Frame = 2 Query: 323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186 ++ YRQ HPPTG++ A++ S + R+LVVA S L++YR+ HD + LE +F L GN+ S+A + + ++D L ++F DAK+++V YD L+T+S+H F+ + G + + DP GRC L+ G QLVVLP R TL E+ + G SSF+ + I D+ L + FL G++EPTL +L+EP QT GR+A ++ TC +V S+N+ Q P Sbjct: 1 MYAVYRQAHPPTGIEFAIYCSFFSNTERNLVVAGTSQLQVYRLIHDAESSVKGDKSSEVKGRKEK----------------------------LEQMASFSLFGNVMSIASVQLAGSKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELKDGFVQNVHIPLVRVDPDGRCAVMLIYGTQLVVLPFRRD--TLSDEQDGV---MGEGQKSSFLPSYII--DVRELDEKLLNVIDMQFLYGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 253
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: UPI0014035BA0 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014035BA0) HSP 1 Score: 126 bits (316), Expect = 1.040e-27 Identity = 94/290 (32.41%), Postives = 140/290 (48.28%), Query Frame = 2 Query: 323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVPFL 1192 +++ +R++HPPTG++HAV+ ++ R+LVVA S L++YR+ HD TE+ LE +F L GNI S+A + + +D L +AF DAK+++V YD L+T+S+H F+ I G + V DP RC A LV G +LVVLP R TL E + G+S + DL L + FL G++EPTL +L+EP QT GR+A ++ TC +V S+N+AQ P + Sbjct: 1 MYSVHRKVHPPTGLEHAVYCHFFSSQERNLVVAGGSQLQIYRLIHD-----TESVSKGDKPTDGKPRKDK-----------------------LEFMSSFSLFGNIMSMASVRLSGSSRDALLLAFMDAKLSVVEYDPATHDLKTLSLHYFEEDEIKDGFHGNVHVPVVRVDPDARCAAMLVYGTRLVVLPFRRE--TLADEAEG-----GVSEGQKPSLLPSYVIDLRGLDEKLLNVLDMQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCGIVAISLNIAQRVHPII 255
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A7K8XUE5_9PICI (CPSF1 factor (Fragment) n=2 Tax=Piciformes TaxID=9219 RepID=A0A7K8XUE5_9PICI) HSP 1 Score: 125 bits (314), Expect = 1.620e-27 Identity = 90/288 (31.25%), Postives = 137/288 (47.57%), Query Frame = 2 Query: 323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186 ++ Y+Q HPPTG++ A+F + ++LVVA S L +YR++HD P + LEL +F GN+ S+A + + ++D L ++F DAK+++V YD L+T+S+H F+ + G + DP GRC L+ G +LVVLP R TL +E L G SSF+ + I D+ L I FL G++EPTL +L+EP QT GR+A ++ TC +V S+N+ Q P Sbjct: 1 MYAVYKQAHPPTGLEFALFCHFFSPAEKNLVVAGTSQLYVYRLNHDSPTLSHPILEGKGHKEK------------------------------LELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPATHDLKTLSLHYFEEPELRDGFVQNVHIPQVRVDPDGRCAVMLIYGTRLVVLPFRRD--TLSEEHDGL---VGEGQKSSFLPSYII--DVRELDEKLLNIIDMQFLYGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 251
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: UPI0018F6BB81 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F6BB81) HSP 1 Score: 125 bits (314), Expect = 1.900e-27 Identity = 92/288 (31.94%), Postives = 140/288 (48.61%), Query Frame = 2 Query: 323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186 ++ YRQ HPPTG++ A++ S + R+LVVA S L++YR+ HD E+T LE +F L GN+ S+A + + ++D L ++F DAK+++V YD L+T+S+H F+ + G + + DP GRC L+ G QLVVLP R TL E+ + G SSF+ + I D+ L + FL G++EPTL +L+EP QT GR+A ++ TC +V S+N+ Q P Sbjct: 1 MYAVYRQTHPPTGIEFAIYCSFFSNTERNLVVAGTSQLQVYRLIHDA--ESTVKGDKPSGRKEK-----------------------------LEQMASFSLFGNVMSIASVQLAGSKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELKDGFVQNIHIPLVRVDPDGRCAVMLIYGTQLVVLPFRRD--TLSDEQDGV---MGEGQKSSFLPSYII--DVRELDEKLLNVIDMQFLYGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 250
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A401T3J4_CHIPU (Uncharacterized protein n=7 Tax=Chondrichthyes TaxID=7777 RepID=A0A401T3J4_CHIPU) HSP 1 Score: 125 bits (314), Expect = 1.920e-27 Identity = 90/288 (31.25%), Postives = 138/288 (47.92%), Query Frame = 2 Query: 323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186 ++ YRQ HPPTG++ A++ S + R+LVVA S L++YR+ HD + LE +F L GN+ S+A + + ++D L ++F DAK+++V YD L+T+S+H F+ + G + + DP GRC L+ G QLVVLP R TL E+ + G SSF+ + I D+ L + FL G++EPTL +L+EP QT GR+A ++ TC +V S+N+ Q P Sbjct: 85 MYAVYRQAHPPTGIEFAIYCSFFSNTERNLVVAGTSQLQVYRLIHDAESSVKGDKSSEVKGRKEK----------------------------LEQMASFSLFGNVMSIASVQLAGSKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELKDGFVQNVHIPLVRVDPDGRCAVMLIYGTQLVVLPFRRD--TLSDEQDGV---MGEGQKSSFLPSYII--DVRELDEKLLNVIDMQFLYGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 337
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A7L1N947_RHICY (CPSF1 factor (Fragment) n=1 Tax=Rhinopomastus cyanomelas TaxID=113115 RepID=A0A7L1N947_RHICY) HSP 1 Score: 124 bits (312), Expect = 3.110e-27 Identity = 91/293 (31.06%), Postives = 137/293 (46.76%), Query Frame = 2 Query: 323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRT-----LLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186 ++ Y+Q HPPTG++ A+F + R+LVVA S L++YR++HD A LEL F GN+ S+A + + ++D L ++F DAK+++V YD L+T+S+H F+ + G + DP GRC L+ G +LVVLP R S + LL E Q SSF+ + I D+ L I FL+G++EPTL +L+EP QT GR+A ++ TC +V S+N+ Q P Sbjct: 1 MYAVYKQAHPPTGLEFAIFCHFFSTSERNLVVAGTSQLQVYRLNHDCETSAKGDRNGEGKGHKEK----------------------------LELVAAFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQNVHPPRVRVDPDGRCAVMLIYGTRLVVLPFRRDSLSDEHDGLLPEGQK----------SSFLPSYII--DVRELDEKLLNIIDLQFLQGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHP 253
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A210PLT2_MIZYE (Cleavage and polyadenylation specificity factor subunit 1 n=3 Tax=Pectinidae TaxID=6566 RepID=A0A210PLT2_MIZYE) HSP 1 Score: 124 bits (312), Expect = 3.430e-27 Identity = 86/295 (29.15%), Postives = 142/295 (48.14%), Query Frame = 2 Query: 323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRV--HHDD---PNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVPFL 1192 ++ Y+Q+HPPTG++H V+ + R+LV+A + L++YR+ DD P++ TE+ LE TF L GNI S+ + + +D L ++F DAK+++V YD L+T S+H F+ + G + + DP GRC A L+ G +LV+LP R + L++E ++ +SS++ DL +K FL G++EPT+ +LYEP+QT AGR A + +C +V S+N+ + P + Sbjct: 1 MYALYKQIHPPTGIEHCVYCNFFNTSERNLVIAAVNQLDVYRLIPEVDDVESPDKWTESKRKQK----------------------------------LESLATFSLFGNIMSMQHVKLPGAHRDALLLSFMDAKLSVVEYDPGTHDLQTTSLHYFEESVMKDGFSTNYDIPTIRVDPDGRCAAMLIYGNRLVILPFRRDA--LMEETDNVVGASKSPIMSSYII------DLRQFDEKIPNVKDFQFLHGYYEPTVFILYEPLQTWAGRTAVRADSCSIVAISLNIQERVHPII 253 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8023.17008.1 >prot_L-elsbetiae_contig8023.17008.1 ID=prot_L-elsbetiae_contig8023.17008.1|Name=mRNA_L-elsbetiae_contig8023.17008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=295bp MTSTAIFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHback to top mRNA from alignment at L-elsbetiae_contig8023:6648..8454+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8023.17008.1 ID=mRNA_L-elsbetiae_contig8023.17008.1|Name=mRNA_L-elsbetiae_contig8023.17008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1807bp|location=Sequence derived from alignment at L-elsbetiae_contig8023:6648..8454+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8023:6648..8454+ >mRNA_L-elsbetiae_contig8023.17008.1 ID=mRNA_L-elsbetiae_contig8023.17008.1|Name=mRNA_L-elsbetiae_contig8023.17008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1770bp|location=Sequence derived from alignment at L-elsbetiae_contig8023:6648..8454+ (Laminarionema elsbetiae ELsaHSoW15)back to top |