prot_L-elsbetiae_contig8023.17008.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8023.17008.1
Unique Nameprot_L-elsbetiae_contig8023.17008.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length295
Homology
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 6.000e-81
Identity = 200/377 (53.05%), Postives = 219/377 (58.09%), Query Frame = 0
Query:    1 MTSTAIFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAAD------------DRPETVTAADPAGRCLAALVAGCQLVVLPALRH--SRTLLKEKQS--------------------LCACFGMSTVSSFVTCFFIICDL--------------------------------------------------LVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 293
            MTSTAI+TCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKAS LELYRVH DD +     XXXXXXXXXXXXXXXXXXX               A+G+YLELAGTFPLAGNIT+LA+IP      DIL V+FG AKMALVAYD++LGRLET+SIHNFDAGAIGPGA              DRP T++++DPAGRCLAA+VAGCQLVVLPA RH      + E+                        A  G S                                                                 L  A +  FIKAAAFLEGFHEP LALLYEPIQTCAGRLASKRSTCRL + SINL Q   P
Sbjct:    1 MTSTAIYTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASTLELYRVHRDDHSXXXXXXXXXXXXXXXXXXXXXXXX---------------ASGYYLELAGTFPLAGNITALAVIP------DILVVSFGVAKMALVAYDSVLGRLETISIHNFDAGAIGPGAGGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARRHVPGSVFVSEEAKRXXXXXXXXXXXXXXXXXXXXAAGAGESAAGGVAXXXXXXXXXXXXXXXXXSVSARESDSEGEEDGGLGNGATAKGDGGAGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAP 356          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A7K9T8I3_9AVES (CPSF1 factor (Fragment) n=1 Tax=Galbula dea TaxID=1109041 RepID=A0A7K9T8I3_9AVES)

HSP 1 Score: 127 bits (319), Expect = 3.400e-29
Identity = 93/288 (32.29%), Postives = 138/288 (47.92%), Query Frame = 0
Query:    6 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 293
            ++  Y+Q HPPTG++ A+F    ++  R+LVVA  S L++YR++HD    A                                          LEL  TF   GN+ S+A + +   ++D L ++F DAK+++V YD     L+T+S+H F+   +  G   +        DP GRC   L+ G +LVVLP  R S  L  E + L    G    SSF+  + I  D+  L      I    FL G++EPTL +LYEP QT  GR+A ++ TC +V  S+N+ Q   P
Sbjct:    1 MYAVYKQAHPPTGLEFAIFCHFFSSTERNLVVAGTSQLQVYRLNHDCETGAKGDRNGEGKGHREK----------------------------LELLATFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQNVHIPQVRVDPDGRCAVMLIYGTRLVVLPFRRDS--LADEHEGL---VGEGQKSSFLPSYII--DVRELDEKLLNIIDMQFLYGYYEPTLLILYEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 253          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: S4RE76_PETMA (Cleavage and polyadenylation specific factor 1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RE76_PETMA)

HSP 1 Score: 126 bits (316), Expect = 5.670e-29
Identity = 94/290 (32.41%), Postives = 140/290 (48.28%), Query Frame = 0
Query:    6 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVPFL 295
            +++ +R++HPPTG++HAV+    ++  R+LVVA  S L++YR+ HD     TE+                                       LE   +F L GNI S+A + +    +D L +AF DAK+++V YD     L+T+S+H F+   I  G   +    V   DP  RC A LV G +LVVLP  R   TL  E +      G+S           + DL  L      +    FL G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+AQ   P +
Sbjct:    1 MYSVHRKVHPPTGLEHAVYCHFFSSQERNLVVAGGSQLQIYRLIHD-----TESVSKGDKPTDGKPRKDK-----------------------LEFMSSFSLFGNIMSMASVRLSGSSRDALLLAFMDAKLSVVEYDPATHDLKTLSLHYFEEDEIKDGFHGNVHVPVVRVDPDARCAAMLVYGTRLVVLPFRRE--TLADEAEG-----GVSEGQKPSLLPSYVIDLRGLDEKLLNVLDMQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCGIVAISLNIAQRVHPII 255          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: UPI0009A38663 (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A38663)

HSP 1 Score: 125 bits (314), Expect = 8.620e-29
Identity = 90/288 (31.25%), Postives = 138/288 (47.92%), Query Frame = 0
Query:    6 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 293
            ++  YRQ HPPTG++ A++ S  +   R+LVVA  S L++YR+ HD  +                                            LE   +F L GN+ S+A + +   ++D L ++F DAK+++V YD     L+T+S+H F+   +  G   +    +   DP GRC   L+ G QLVVLP  R   TL  E+  +    G    SSF+  + I  D+  L      +    FL G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+ Q   P
Sbjct:    1 MYAVYRQAHPPTGIEFAIYCSFFSNTERNLVVAGTSQLQVYRLIHDAESSVKGDKSSEVKGRKEK----------------------------LEQMASFSLFGNVMSIASVQLAGSKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELKDGFVQNVHIPLVRVDPDGRCAVMLIYGTQLVVLPFRRD--TLSDEQDGV---MGEGQKSSFLPSYII--DVRELDEKLLNVIDMQFLYGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 253          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: UPI0014035BA0 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014035BA0)

HSP 1 Score: 126 bits (316), Expect = 9.510e-29
Identity = 94/290 (32.41%), Postives = 140/290 (48.28%), Query Frame = 0
Query:    6 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVPFL 295
            +++ +R++HPPTG++HAV+    ++  R+LVVA  S L++YR+ HD     TE+                                       LE   +F L GNI S+A + +    +D L +AF DAK+++V YD     L+T+S+H F+   I  G   +    V   DP  RC A LV G +LVVLP  R   TL  E +      G+S           + DL  L      +    FL G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+AQ   P +
Sbjct:    1 MYSVHRKVHPPTGLEHAVYCHFFSSQERNLVVAGGSQLQIYRLIHD-----TESVSKGDKPTDGKPRKDK-----------------------LEFMSSFSLFGNIMSMASVRLSGSSRDALLLAFMDAKLSVVEYDPATHDLKTLSLHYFEEDEIKDGFHGNVHVPVVRVDPDARCAAMLVYGTRLVVLPFRRE--TLADEAEG-----GVSEGQKPSLLPSYVIDLRGLDEKLLNVLDMQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCGIVAISLNIAQRVHPII 255          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A7K8XUE5_9PICI (CPSF1 factor (Fragment) n=2 Tax=Piciformes TaxID=9219 RepID=A0A7K8XUE5_9PICI)

HSP 1 Score: 125 bits (314), Expect = 1.580e-28
Identity = 90/288 (31.25%), Postives = 137/288 (47.57%), Query Frame = 0
Query:    6 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 293
            ++  Y+Q HPPTG++ A+F    +   ++LVVA  S L +YR++HD P  +                                          LEL  +F   GN+ S+A + +   ++D L ++F DAK+++V YD     L+T+S+H F+   +  G   +        DP GRC   L+ G +LVVLP  R   TL +E   L    G    SSF+  + I  D+  L      I    FL G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+ Q   P
Sbjct:    1 MYAVYKQAHPPTGLEFALFCHFFSPAEKNLVVAGTSQLYVYRLNHDSPTLSHPILEGKGHKEK------------------------------LELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPATHDLKTLSLHYFEEPELRDGFVQNVHIPQVRVDPDGRCAVMLIYGTRLVVLPFRRD--TLSEEHDGL---VGEGQKSSFLPSYII--DVRELDEKLLNIIDMQFLYGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 251          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: UPI0018F6BB81 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F6BB81)

HSP 1 Score: 125 bits (314), Expect = 1.750e-28
Identity = 92/288 (31.94%), Postives = 140/288 (48.61%), Query Frame = 0
Query:    6 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 293
            ++  YRQ HPPTG++ A++ S  +   R+LVVA  S L++YR+ HD   E+T                                         LE   +F L GN+ S+A + +   ++D L ++F DAK+++V YD     L+T+S+H F+   +  G   +    +   DP GRC   L+ G QLVVLP  R   TL  E+  +    G    SSF+  + I  D+  L      +    FL G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+ Q   P
Sbjct:    1 MYAVYRQTHPPTGIEFAIYCSFFSNTERNLVVAGTSQLQVYRLIHDA--ESTVKGDKPSGRKEK-----------------------------LEQMASFSLFGNVMSIASVQLAGSKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELKDGFVQNIHIPLVRVDPDGRCAVMLIYGTQLVVLPFRRD--TLSDEQDGV---MGEGQKSSFLPSYII--DVRELDEKLLNVIDMQFLYGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 250          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A401T3J4_CHIPU (Uncharacterized protein n=7 Tax=Chondrichthyes TaxID=7777 RepID=A0A401T3J4_CHIPU)

HSP 1 Score: 125 bits (314), Expect = 1.760e-28
Identity = 90/288 (31.25%), Postives = 138/288 (47.92%), Query Frame = 0
Query:    6 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 293
            ++  YRQ HPPTG++ A++ S  +   R+LVVA  S L++YR+ HD  +                                            LE   +F L GN+ S+A + +   ++D L ++F DAK+++V YD     L+T+S+H F+   +  G   +    +   DP GRC   L+ G QLVVLP  R   TL  E+  +    G    SSF+  + I  D+  L      +    FL G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+ Q   P
Sbjct:   85 MYAVYRQAHPPTGIEFAIYCSFFSNTERNLVVAGTSQLQVYRLIHDAESSVKGDKSSEVKGRKEK----------------------------LEQMASFSLFGNVMSIASVQLAGSKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELKDGFVQNVHIPLVRVDPDGRCAVMLIYGTQLVVLPFRRD--TLSDEQDGV---MGEGQKSSFLPSYII--DVRELDEKLLNVIDMQFLYGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 337          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A7L1N947_RHICY (CPSF1 factor (Fragment) n=1 Tax=Rhinopomastus cyanomelas TaxID=113115 RepID=A0A7L1N947_RHICY)

HSP 1 Score: 124 bits (312), Expect = 3.010e-28
Identity = 91/293 (31.06%), Postives = 137/293 (46.76%), Query Frame = 0
Query:    6 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRT-----LLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 293
            ++  Y+Q HPPTG++ A+F    +   R+LVVA  S L++YR++HD    A                                          LEL   F   GN+ S+A + +   ++D L ++F DAK+++V YD     L+T+S+H F+   +  G   +        DP GRC   L+ G +LVVLP  R S +     LL E Q           SSF+  + I  D+  L      I    FL+G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+ Q   P
Sbjct:    1 MYAVYKQAHPPTGLEFAIFCHFFSTSERNLVVAGTSQLQVYRLNHDCETSAKGDRNGEGKGHKEK----------------------------LELVAAFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQNVHPPRVRVDPDGRCAVMLIYGTRLVVLPFRRDSLSDEHDGLLPEGQK----------SSFLPSYII--DVRELDEKLLNIIDLQFLQGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHP 253          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A210PLT2_MIZYE (Cleavage and polyadenylation specificity factor subunit 1 n=3 Tax=Pectinidae TaxID=6566 RepID=A0A210PLT2_MIZYE)

HSP 1 Score: 124 bits (312), Expect = 3.210e-28
Identity = 86/295 (29.15%), Postives = 142/295 (48.14%), Query Frame = 0
Query:    6 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRV--HHDD---PNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVPFL 295
            ++  Y+Q+HPPTG++H V+ +      R+LV+A  + L++YR+    DD   P++ TE+                                       LE   TF L GNI S+  + +    +D L ++F DAK+++V YD     L+T S+H F+   +  G + +        DP GRC A L+ G +LV+LP  R +  L++E  ++        +SS++       DL         +K   FL G++EPT+ +LYEP+QT AGR A +  +C +V  S+N+ +   P +
Sbjct:    1 MYALYKQIHPPTGIEHCVYCNFFNTSERNLVIAAVNQLDVYRLIPEVDDVESPDKWTESKRKQK----------------------------------LESLATFSLFGNIMSMQHVKLPGAHRDALLLSFMDAKLSVVEYDPGTHDLQTTSLHYFEESVMKDGFSTNYDIPTIRVDPDGRCAAMLIYGNRLVILPFRRDA--LMEETDNVVGASKSPIMSSYII------DLRQFDEKIPNVKDFQFLHGYYEPTVFILYEPLQTWAGRTAVRADSCSIVAISLNIQERVHPII 253          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W8_ECTSI6.000e-8153.05Cleavage and polyadenylation specificity factor CG... [more]
A0A7K9T8I3_9AVES3.400e-2932.29CPSF1 factor (Fragment) n=1 Tax=Galbula dea TaxID=... [more]
S4RE76_PETMA5.670e-2932.41Cleavage and polyadenylation specific factor 1 n=2... [more]
UPI0009A386638.620e-2931.25cleavage and polyadenylation specificity factor su... [more]
UPI0014035BA09.510e-2932.41cleavage and polyadenylation specificity factor su... [more]
A0A7K8XUE5_9PICI1.580e-2831.25CPSF1 factor (Fragment) n=2 Tax=Piciformes TaxID=9... [more]
UPI0018F6BB811.750e-2831.94cleavage and polyadenylation specificity factor su... [more]
A0A401T3J4_CHIPU1.760e-2831.25Uncharacterized protein n=7 Tax=Chondrichthyes Tax... [more]
A0A7L1N947_RHICY3.010e-2831.06CPSF1 factor (Fragment) n=1 Tax=Rhinopomastus cyan... [more]
A0A210PLT2_MIZYE3.210e-2829.15Cleavage and polyadenylation specificity factor su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 92..290
e-value: 2.3E-11
score: 44.9
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 9..289
NoneNo IPR availablePANTHERPTHR10644:SF2CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1coord: 9..289
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 237..295
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 178..198
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 210..236
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 199..209
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..177

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8023contigL-elsbetiae_contig8023:6955..8454 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8023.17008.1mRNA_L-elsbetiae_contig8023.17008.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8023 6648..8454 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8023.17008.1 ID=prot_L-elsbetiae_contig8023.17008.1|Name=mRNA_L-elsbetiae_contig8023.17008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=295bp
MTSTAIFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHH
DDPNEATEAAAAGAGGKTAGGGSGAGSSGAAAAATADNDDNDDATGFYLE
LAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLET
VSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRH
SRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLE
GFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVPFL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf