mRNA_L-elsbetiae_contig8019.17001.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8019.17001.1 vs. uniprot
Match: D8LNE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE5_ECTSI) HSP 1 Score: 519 bits (1336), Expect = 3.320e-162 Identity = 475/1104 (43.03%), Postives = 575/1104 (52.08%), Query Frame = 1
Query: 1 PDEVSWVPRMDAIRKAQVAEVEALEEIVGTLASKQQSSIKKLRQQMDTIIAWKTQIVLQDRKVAARREAAKATNRENVEKVAGDAVNSTVXXXXXXXXXXXGTIEGVDRQSDAESSALVDEDKEDGESIIEEPIEQGAPLSDDVVFLMHRVTVLERDLVKLQEMWDMNKGQRVIEVWMSILNRKRYKPSNIDDPVECAIVTLQNWWRDMLVTKLDWRSSSGSSTXXXXXXXXXKAKEEDSPRMSTQGEM---DAESEHTASSSPENATTGDAIKRPAQARKAIPPSDQSGQRSXXXXXXXXXSSEEDFGNREDQVLSVDAPLVPSTLSFSTEKTLKDLGEADFSDAEHQERQQHPQESEKAEPVPSPASGRHAAGAVRRTPHTRKSAVEATSYGGASQQEHHQDEIPAASERGVKKR-----EAARAPAAKETTAKHKTSTGESRPEERRSKHASSASTRHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSGGGVQGMFDGAIGASPVLMITSMAMQLQSQETELENLQYQVTNLETVLE--EQASRDRYRDIVASRE-----RAELKDAAKDHDEHGHSKQWHSDGRDHSTQPHSDQISSERVSEMGRSLGELQRELEVIRDRAEDRDKRTELSLEDLEALIAAKDEDTNRRFQEQARENAEAIKKLLARLGTGADDENTTVVRKALIELKLELRSLYSSLDAISGNEISANQLRSMEGIRHLLASFSE----RARVLEEEIGDPAALAQDIVAGNVSARRFADMATDLGTTLFAFIKAQVLQARRAREGANGATKVHRRTSSAEVATAVVDANLSGENSAEASGXXXXXXXXXXXX-RSSATGASPQAWAKLSYLTYTRDRTSEKMPFPAGMVGLLKAVSDVLNHCVGTGDLA-----------------------------------------------------------IRLSVTLEDLTVYVAQRADKERESVIRQLSAPVDAVKDKLAEMEETLAGFQRTMHLVLSEVDADRERSAAIAALGTTVKTMQSLFSRLSDDLESKAGASEIEKALEDMTLKISQTTDEQSKLQRLGRALGKDQNSSAAMKRLQIELEQ 3075
P+EV W PRMD IR+AQ+AEV+ALE +VG LASKQQSSI KL +Q++ ++AWK+++ RK AA+R+A EN + A + N+ A + E+ + G + +E I GAP DV R ++E D+ E W N+ E IL+ + D E L+ R D SS S ED+ R + GE ES H +S +A G+ F +R+ + S + PS L+ A D +E +Q P+ E+ P +G AG R A + +S G S+ Q A G K R E A A E T + S+ ER+ +H SSA XXXXXXXXXXXX +S GGVQGMFDGA+G +PVLM TSMAMQLQSQETELENLQ+Q+ +LE + QA R D+ S R AA D DE+ H KQ HS G Q S + SE S+MGR LG+LQRE+ +RDR ED++KRTE+SLE+LEALIAAKDE+ NRRF +QA++NA+AI +LLARL + A DE + VV KAL+ELKLELRSL SSL+AIS NE R I L S R ++ IG+ ++ G F+D ATDLGTTLFAF+KAQVLQARRA +G XXXXXX SS +GASPQAW KL+ LTYTR TSEKMPFPAGMV LLKA+S+VLNHCVGTGDLA IRLSVTLEDLTVYVAQRADKERESVIRQLSAPVD+VK KL EME TLAGFQRTMHLVLSEVDADRERS AIA LGTTV+TMQ LFSRLS +L SKAGASEIEKALEDMTLKI+++ +EQ+KLQRLGR LGKDQNSS AMKRLQIELEQ
Sbjct: 16 PEEVPWAPRMDDIRQAQLAEVDALERVVGALASKQQSSIAKLGKQVEMMMAWKSEVADMSRKAAAKRKA------ENFARRANTSANT------------------------ANLTGASGENLDAGVAREDETIAVGAPEQSDV----DRSALVEHDI----EEWHNNRSDEAHEQGSEILD------IDSSDEKESNKTELEREVRHRQAANDDDNSSLPCSA-------------EDAARGPSHGETYTTSTESPHRQNSDESSAGGGE------------------------------------FPSRQKRGSSSGSHWDPSNLTAV----------AGPEDEGFEEIEQDPR-LERNAGTPVAKAGGGTAGDDDRPKGASTIAGKVSSAGAHSEGRRGQRPQKARKRAGTKPRVSNIKEPTLADAPNEITRRD---VELSKKGERKDRHGSSAXX-----------------XXXXXXXXXXXXKKRESSGGVQGMFDGAMGGNPVLMFTSMAMQLQSQETELENLQHQLMSLEAGWDGQRQARRVGQEDVNKSHHNDPHSRDHQAKAALDSDEYAHPKQQHS-GPQPVAQSMSLERPSEESSQMGRDLGKLQREIIAVRDRVEDQEKRTEISLEELEALIAAKDEEYNRRFLKQAQQNADAINRLLARLDSNAVDEKSKVVHKALVELKLELRSLLSSLEAISSNERGRGCWRRRLEIPLRLPKISPWTALRQWWVKSYIGE-----KEGRKGGEEREHFSDRATDLGTTLFAFVKAQVLQARRAEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSEGVESSTSGASPQAWVKLNCLTYTRHGTSEKMPFPAGMVVLLKALSNVLNHCVGTGDLAVGTCVCFDLTEAPNHFTTPRLSLFKTWVRTTLTRNAPHKSPGCPPRKLKRHNDRIAKIKIRLSVTLEDLTVYVAQRADKERESVIRQLSAPVDSVKGKLGEMENTLAGFQRTMHLVLSEVDADRERSQAIADLGTTVETMQGLFSRLSKELSSKAGASEIEKALEDMTLKINKSANEQTKLQRLGRVLGKDQNSSVAMKRLQIELEQ 989
BLAST of mRNA_L-elsbetiae_contig8019.17001.1 vs. uniprot
Match: A0A6H5JL36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL36_9PHAE) HSP 1 Score: 464 bits (1194), Expect = 2.220e-148 Identity = 289/436 (66.28%), Postives = 334/436 (76.61%), Query Frame = 1
Query: 1771 VSEMGRSLGELQRELEVIRDRAEDRDKRTELSLEDLEALIAAKDEDTNRRFQEQARENAEAIKKLLARLGTGADDENTTVVRKALIELKLELRSLYSSLDAISGNEISANQLRSMEGIRHLLASFSERARVLEEEIGDPAALAQDIVAGNVSARRFADMATDLGTTLFAFIKAQVLQARRAREGANGATKVHRRTSSAEVATAVVDANLSGENSAEASGXXXXXXXXXXXX-RSSATGASPQAWAKLSYLTYTRDRTSEKMPFPAGMVGLLKAVSDVLNHCVGTGDLAIRLSVTLEDLTVYVAQRADKERESVIRQLSAPVDAVKDKLAEMEETLAGFQRTMHLVLSEVDADRERSAAIAALGTTVKTMQSLFSRLSDDLESKAGASEIEKALEDMTLKISQTTDEQSKLQRLGRALGKDQNSSAAMKRLQIELEQ 3075
+S+MGR LG LQRE+ +R+R ED++KRTE+SLE+LEALIAAKDE+ RRF++QA++NA+AI +LL RL + A DE + VV KAL+ELKLELRSL SSL+ IS NE+SAN+LRSM IRHLL + SERARVLEEEIGD A LA+DIV + +A ++ + +VLQARRA XXXXXXXXX SS +GASPQAWAKL+YLTYTR TSEKMPFPAGMV LLKA+S+VLNHCVGTGDLAIRLSVTLEDLTVYVAQRADKERESVIRQLSAPVD+VK+KL EME LAGFQRTMHLVLSEVDADRERS AIA LGTTV+TMQ LFSRLS++L SKAGASEIEKALE+MT KI+++ +EQ+KLQRLGR LGKDQNSS AMKRLQIELEQ
Sbjct: 1 MSQMGRDLGNLQREIVAVRNRVEDQEKRTEISLEELEALIAAKDEEYKRRFRKQAQQNADAINRLLERLDSNAVDEKSKVVHKALVELKLELRSLLSSLEGISSNEVSANKLRSMGAIRHLLVNISERARVLEEEIGDLATLAKDIVMDSPAAMVGEELQWGKEGRKGGEER-EVLQARRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGVESSTSGASPQAWAKLNYLTYTRHGTSEKMPFPAGMVVLLKALSNVLNHCVGTGDLAIRLSVTLEDLTVYVAQRADKERESVIRQLSAPVDSVKEKLGEMENALAGFQRTMHLVLSEVDADRERSQAIAELGTTVETMQRLFSRLSEELSSKAGASEIEKALEEMTSKINKSANEQTKLQRLGRVLGKDQNSSVAMKRLQIELEQ 435
BLAST of mRNA_L-elsbetiae_contig8019.17001.1 vs. uniprot
Match: A0A836C707_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C707_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 7.920e-10 Identity = 45/146 (30.82%), Postives = 77/146 (52.74%), Query Frame = 1
Query: 2530 DRTSEKMPFPAGMVGLLKAVSDVLNHCVGTGDLAIRLSVTLEDLTVYVAQRADKERESVIRQLSAPVDAVKDKLAEMEETLAGFQRTMHLVLSEVDADRERSAAIAALGTTVKTMQSLFSRLSDDLESKAGASEIEKALEDMTLKI 2967
D S + F G+ LL A+ L+ C TG+LA+RLSV + DL + E E + +++ +A +TL QR++HL++SEV+ D R A+ L V ++ + + ++ +KAGA E++ +L+DM K+
Sbjct: 520 DGLSMECTFAEGLAALLSALKACLDGCTSTGELAVRLSVAVSDLAAFARSTCSAEHEFTVEH-QGKLESQVLAMAGQHDTL---QRSLHLLISEVENDVARREAVKGLEGAVLDLRKAYEMVKAEMGNKAGADELQASLQDMAQKL 661 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8019.17001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8019.17001.1 >prot_L-elsbetiae_contig8019.17001.1 ID=prot_L-elsbetiae_contig8019.17001.1|Name=mRNA_L-elsbetiae_contig8019.17001.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1016bp MDAIRKAQVAEVEALEEIVGTLASKQQSSIKKLRQQMDTIIAWKTQIVLQback to top mRNA from alignment at L-elsbetiae_contig8019:1330..8537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8019.17001.1 ID=mRNA_L-elsbetiae_contig8019.17001.1|Name=mRNA_L-elsbetiae_contig8019.17001.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7208bp|location=Sequence derived from alignment at L-elsbetiae_contig8019:1330..8537+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8019:1330..8537+ >mRNA_L-elsbetiae_contig8019.17001.1 ID=mRNA_L-elsbetiae_contig8019.17001.1|Name=mRNA_L-elsbetiae_contig8019.17001.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6096bp|location=Sequence derived from alignment at L-elsbetiae_contig8019:1330..8537+ (Laminarionema elsbetiae ELsaHSoW15)back to top |