mRNA_L-elsbetiae_contig801.16997.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig801.16997.1
Unique NamemRNA_L-elsbetiae_contig801.16997.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig801.16997.1 vs. uniprot
Match: D7FRM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM6_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 4.270e-76
Identity = 173/241 (71.78%), Postives = 190/241 (78.84%), Query Frame = 1 
Query:    1 MPDPSSAKRTATDDAGTGIEEEVKDFSARLARLVVSRAFREASAXXXXXXXXXXXXXXXXEGPTRPGXXXXXXXXXXXXXXXXXLLCSRGG----------GGRTALGLYTAEAELILRGSQRLGAQLEEDAGTLRLRVFPALLENARQLRALYVAIDRAAEEVVPEVDAAVQRMEKAVYDLEELRKEQVDTRAPQGSFGLGVALGAGLWLPRAREDGVDVPEVFDTDELFRVKEGGLAPL 693
            M D ++ K    DD   GIEEEV+DF+AR ARLVVSR+FRE   XXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXX     G           G R+ALG Y AEAEL LRGSQRLGAQLE+DAG LR +VFPALLENAR+L ALYVAIDR  EEV+PEVDA V+RMEKAVYDLEE+RKEQVDTRAPQGSFGLG+ALGAGLW P+ +E GV VPEVFDTD+LFRV+EGGLAPL
Sbjct:    1 MSDQATDKNAVADDGEVGIEEEVRDFAARFARLVVSRSFREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL 241
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig801.16997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRM6_ECTSI4.270e-7671.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig801contigL-elsbetiae_contig801:31873..32852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002480.1
Exons1
Model size980
Cds size696
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816886.5975623-CDS-L-elsbetiae_contig801:31872..325681622816886.5975623-CDS-L-elsbetiae_contig801:31872..32568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig801 31873..32568 +
1691683887.518556-CDS-L-elsbetiae_contig801:31872..325681691683887.518556-CDS-L-elsbetiae_contig801:31872..32568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig801 31873..32568 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816886.6110992-UTR-L-elsbetiae_contig801:32568..328521622816886.6110992-UTR-L-elsbetiae_contig801:32568..32852Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig801 32569..32852 +
1691683887.5285072-UTR-L-elsbetiae_contig801:32568..328521691683887.5285072-UTR-L-elsbetiae_contig801:32568..32852Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig801 32569..32852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig801.16997.1prot_L-elsbetiae_contig801.16997.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig801 31873..32568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig801.16997.1

>prot_L-elsbetiae_contig801.16997.1 ID=prot_L-elsbetiae_contig801.16997.1|Name=mRNA_L-elsbetiae_contig801.16997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp
MPDPSSAKRTATDDAGTGIEEEVKDFSARLARLVVSRAFREASASGAGEG
KGGGGGGGGGEGPTRPGGVGGTGGDDGGSSPAGLLLCSRGGGGRTALGLY
TAEAELILRGSQRLGAQLEEDAGTLRLRVFPALLENARQLRALYVAIDRA
AEEVVPEVDAAVQRMEKAVYDLEELRKEQVDTRAPQGSFGLGVALGAGLW
LPRAREDGVDVPEVFDTDELFRVKEGGLAPL*
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mRNA from alignment at L-elsbetiae_contig801:31873..32852+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig801.16997.1 ID=mRNA_L-elsbetiae_contig801.16997.1|Name=mRNA_L-elsbetiae_contig801.16997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=980bp|location=Sequence derived from alignment at L-elsbetiae_contig801:31873..32852+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGATCCGTCCTCGGCCAAGCGCACCGCCACCGATGACGCCGGGAC
CGGTATCGAGGAAGAGGTGAAGGACTTCTCCGCTCGTCTGGCACGCCTCG
TTGTCAGCCGAGCTTTCCGAGAAGCCAGCGCTAGCGGGGCAGGAGAAGGA
AAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGGCCTACCCGACCAGG
GGGCGTCGGCGGCACGGGCGGCGATGACGGCGGAAGCTCTCCCGCGGGGC
TGCTCTTGTGCTCGCGAGGGGGGGGAGGGCGGACCGCCCTGGGCCTGTAC
ACGGCGGAGGCCGAGCTGATCCTTCGAGGGTCGCAGCGGCTCGGGGCGCA
GCTGGAGGAGGACGCCGGCACCCTGCGGTTGAGGGTGTTCCCCGCGCTCC
TGGAGAACGCCCGGCAGCTGCGCGCGCTGTACGTGGCGATCGACAGGGCG
GCGGAGGAGGTGGTGCCCGAGGTGGACGCGGCGGTCCAGCGGATGGAGAA
AGCCGTGTACGACCTCGAAGAGCTGCGGAAGGAGCAGGTGGACACGCGGG
CCCCGCAGGGGTCGTTTGGGCTCGGGGTGGCGCTCGGGGCCGGGCTGTGG
CTCCCCCGGGCGAGAGAGGACGGGGTGGACGTCCCGGAGGTTTTCGACAC
GGACGAGCTTTTTCGGGTGAAGGAAGGCGGTCTGGCTCCTCTTTGACGCA
GGATGGTGGGCGGTATTTTTCTGCGCTGCTGGCATACATAGCAGCAGGAC
CGGATGCGCCGCAGCGGTTTGCTTTCATGGGCGGCGTTGGTCTCTCGGCG
CAGGGAGGGGGGGTTCGCGCAGACGCGCTCGGTTTGGGGGGGGTGGCGCG
TCCCATCGTTCCTTGTACCGTAGGTGACATAAGATAAGACACCCCCTGGA
CCGATTTTCAAATCTCAAGAACTCCGCAGCAAGCAGAGCGTCAGTCCCGA
AAAGGGCGGCGTTGGCAAGATCTCGTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig801:31873..32852+

>mRNA_L-elsbetiae_contig801.16997.1 ID=mRNA_L-elsbetiae_contig801.16997.1|Name=mRNA_L-elsbetiae_contig801.16997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig801:31873..32852+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGATCCGTCCTCGGCCAAGCGCACCGCCACCGATGACGCCGGGAC
CGGTATCGAGGAAGAGGTGAAGGACTTCTCCGCTCGTCTGGCACGCCTCG
TTGTCAGCCGAGCTTTCCGAGAAGCCAGCGCTAGCGGGGCAGGAGAAGGA
AAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGGCCTACCCGACCAGG
GGGCGTCGGCGGCACGGGCGGCGATGACGGCGGAAGCTCTCCCGCGGGGC
TGCTCTTGTGCTCGCGAGGGGGGGGAGGGCGGACCGCCCTGGGCCTGTAC
ACGGCGGAGGCCGAGCTGATCCTTCGAGGGTCGCAGCGGCTCGGGGCGCA
GCTGGAGGAGGACGCCGGCACCCTGCGGTTGAGGGTGTTCCCCGCGCTCC
TGGAGAACGCCCGGCAGCTGCGCGCGCTGTACGTGGCGATCGACAGGGCG
GCGGAGGAGGTGGTGCCCGAGGTGGACGCGGCGGTCCAGCGGATGGAGAA
AGCCGTGTACGACCTCGAAGAGCTGCGGAAGGAGCAGGTGGACACGCGGG
CCCCGCAGGGGTCGTTTGGGCTCGGGGTGGCGCTCGGGGCCGGGCTGTGG
CTCCCCCGGGCGAGAGAGGACGGGGTGGACGTCCCGGAGGTTTTCGACAC
GGACGAGCTTTTTCGGGTGAAGGAAGGCGGTCTGGCTCCTCTTTGAATGC
CGGATCCGTCCTCGGCCAAGCGCACCGCCACCGATGACGCCGGGACCGGT
ATCGAGGAAGAGGTGAAGGACTTCTCCGCTCGTCTGGCACGCCTCGTTGT
CAGCCGAGCTTTCCGAGAAGCCAGCGCTAGCGGGGCAGGAGAAGGAAAAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGGCCTACCCGACCAGGGGGC
GTCGGCGGCACGGGCGGCGATGACGGCGGAAGCTCTCCCGCGGGGCTGCT
CTTGTGCTCGCGAGGGGGGGGAGGGCGGACCGCCCTGGGCCTGTACACGG
CGGAGGCCGAGCTGATCCTTCGAGGGTCGCAGCGGCTCGGGGCGCAGCTG
GAGGAGGACGCCGGCACCCTGCGGTTGAGGGTGTTCCCCGCGCTCCTGGA
GAACGCCCGGCAGCTGCGCGCGCTGTACGTGGCGATCGACAGGGCGGCGG
AGGAGGTGGTGCCCGAGGTGGACGCGGCGGTCCAGCGGATGGAGAAAGCC
GTGTACGACCTCGAAGAGCTGCGGAAGGAGCAGGTGGACACGCGGGCCCC
GCAGGGGTCGTTTGGGCTCGGGGTGGCGCTCGGGGCCGGGCTGTGGCTCC
CCCGGGCGAGAGAGGACGGGGTGGACGTCCCGGAGGTTTTCGACACGGAC
GAGCTTTTTCGGGTGAAGGAAGGCGGTCTGGCTCCTCTTTGA
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