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Homology
BLAST of mRNA_L-elsbetiae_contig801.16996.1 vs. uniprot
Match: D7FRM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM7_ECTSI) HSP 1 Score: 215 bits (547), Expect = 3.960e-62 Identity = 124/199 (62.31%), Postives = 149/199 (74.87%), Query Frame = 1
Query: 7 RFKMIRRNSLRNEVDGSFEELEDVEDSSDTPPLSNKYLLKHQECVLLNRVLSDKTKLPPACFAPPSARAVRR----VSTRPKAPKPVPQD-ESAIGVLVRRITGAVQPVLSSLN-PSHAPKKEMGGVVTEEQCRTLADYLSPSVGGQYLLPTACSKLLNKGDGTDRAKM---NDAEVFDRLKRRPTVMAKEG-FPPTIC 573
RFK IRR++L NEVDG F++LE+ ED ++T P +Y + HQECVLLNRVLSDK+ LP ACF PP A A R S RPK P+P+P+D E+A+ LVRRITGAVQPVLSSL P HA KKEMGG +TEEQC+ LADYLSPSVGG YLLPTAC LL D ++AKM +AE++ RLK+R T MA+EG FPPT+C
Sbjct: 8 RFKGIRRDTLHNEVDGCFDDLEEFEDRNETSP---QYRVTHQECVLLNRVLSDKSTLPSACFVPPGAEAAARRASSSSQRPKEPRPLPEDGETAVVQLVRRITGAVQPVLSSLTTPLHARKKEMGGTITEEQCQALADYLSPSVGGGYLLPTACFGLLKPPD-EEQAKMYVMQNAEMYVRLKKRHTGMAEEGYFPPTMC 202
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_002470.1 |
| Exons | 3 |
| Model size | 2049 |
| Cds size | 561 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816886.5265977-UTR-L-elsbetiae_contig801:25960..27433 | 1622816886.5265977-UTR-L-elsbetiae_contig801:25960..27433 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig801 25961..27433 - |
| 1691683887.466075-UTR-L-elsbetiae_contig801:25960..27433 | 1691683887.466075-UTR-L-elsbetiae_contig801:25960..27433 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig801 25961..27433 - |
| 1622816886.5678487-UTR-L-elsbetiae_contig801:29056..29071 | 1622816886.5678487-UTR-L-elsbetiae_contig801:29056..29071 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig801 29057..29071 - |
| 1691683887.5093913-UTR-L-elsbetiae_contig801:29056..29071 | 1691683887.5093913-UTR-L-elsbetiae_contig801:29056..29071 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig801 29057..29071 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816886.5381327-CDS-L-elsbetiae_contig801:27433..27654 | 1622816886.5381327-CDS-L-elsbetiae_contig801:27433..27654 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig801 27434..27654 - |
| 1691683887.4765458-CDS-L-elsbetiae_contig801:27433..27654 | 1691683887.4765458-CDS-L-elsbetiae_contig801:27433..27654 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig801 27434..27654 - |
| 1622816886.54786-CDS-L-elsbetiae_contig801:28072..28315 | 1622816886.54786-CDS-L-elsbetiae_contig801:28072..28315 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig801 28073..28315 - |
| 1691683887.4858222-CDS-L-elsbetiae_contig801:28072..28315 | 1691683887.4858222-CDS-L-elsbetiae_contig801:28072..28315 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig801 28073..28315 - |
| 1622816886.5575924-CDS-L-elsbetiae_contig801:28959..29056 | 1622816886.5575924-CDS-L-elsbetiae_contig801:28959..29056 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig801 28960..29056 - |
| 1691683887.4954538-CDS-L-elsbetiae_contig801:28959..29056 | 1691683887.4954538-CDS-L-elsbetiae_contig801:28959..29056 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig801 28960..29056 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig801.16996.1 >prot_L-elsbetiae_contig801.16996.1 ID=prot_L-elsbetiae_contig801.16996.1|Name=mRNA_L-elsbetiae_contig801.16996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
MIRRNSLRNEVDGSFEELEDVEDSSDTPPLSNKYLLKHQECVLLNRVLSD
KTKLPPACFAPPSARAVRRVSTRPKAPKPVPQDESAIGVLVRRITGAVQP
VLSSLNPSHAPKKEMGGVVTEEQCRTLADYLSPSVGGQYLLPTACSKLLN
KGDGTDRAKMNDAEVFDRLKRRPTVMAKEGFPPTIC* back to topmRNA from alignment at L-elsbetiae_contig801:25961..29071- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig801.16996.1 ID=mRNA_L-elsbetiae_contig801.16996.1|Name=mRNA_L-elsbetiae_contig801.16996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3111bp|location=Sequence derived from alignment at L-elsbetiae_contig801:25961..29071- (Laminarionema elsbetiae ELsaHSoW15)
AACAATCGTTTCAAGATGATTCGGCGAAACAGCCTGCGCAACGAGGTGGA
CGGGTCTTTCGAGGAGTTAGAGGACGTCGAGGACAGCAGCGACACGCCTC
CACTAAGCAACAGTGAGTTTAGAGTTTAGCCGTCAGCCGGCCTGTTGTTG
GAAAATTTTGATTGTTGTGATGTCCACGGCCTGTTAGTCGTCAACGAGTG
TCCGCAGGGGCTGGGGGGAGGGCTTGTTCCCGAAGCAGCTGTTTGTGTGT
TTCGCTTTCTTGAAGCACAGTCTAACTCGCTGAGGACACGTAAAGCTGAT
TTCGATCTTGTATTGGAGTGTGTCATAGAACGCGACCCCCGTGGGTTGAT
GAGAGCGAGTCTCGCGCAGAGCAGCACGTACCCGCCTACTTCGAGGGTGA
ACCTTGCCTGTATGGTCTAGACAGTGATTGTGGGCGATTGTGTGAATATT
TCCTACAATCCGTGGCTTGTTCCGATCTGAGTCTGCCAAGAATGACCTGT
CATCTGACGGCACACGTCGAAGAAGGGTGCCGAGAGAGGCTACCCACTCC
GGAGAGAACGCTTGCTGTTAGCCCGTTGAGTGACTCTGTGCCCCGCTGCT
CTCGGGAGAAGTCCGTAAACGTCCGAGGTGGGATACGAAAAATGAGCATG
TTTCTCCCTTGCGCACGCCGAGTCGACCATTTTAGTGTGCACCCCTTTCA
CCGTTGCATGCTCACTTGAATCCCTGGCCAACACCACCTCATTTCGAAAA
CCCCAGAGTACCTTCTGAAGCACCAGGAGTGCGTGCTTCTGAACCGTGTT
CTCTCCGACAAGACGAAGTTGCCCCCGGCCTGCTTCGCGCCGCCGAGCGC
GAGAGCAGTGCGGAGAGTCTCCACGCGGCCGAAAGCGCCCAAGCCGGTGC
CACAAGACGAGAGCGCCATAGGAGTTCTCGTGCGGCGAATTACGGGCGCT
GTGCAACCGGTACTCAGCAGCTTGAACCCTTCGCATGCCCCCAAGAAAGG
TGTGTATATTCGTTCGTATCACTTGTAGCGCTTGGGCATGACGTTTCATG
GGGCTGTTTCGGTGCGTGCACGTAAATGCCTTAAAAAAGGTGTTCAGGGT
GTAGTCTTGGTCTACTGTAGTCCCTTTTGACACACGCAATGTTTTTCATA
TTTGTGTAGATCGTAGATCGTAGAAGGGTGTGCGTTCGCAGTGAGCGTGC
GTCCCGCTTCTGAGCCCTCTTCTGAGGACGGTAGCGTATGCCGCAGGCGG
AGCGTTGCCATGGCGTGTCAGGCACGAGCCATTCCCTCCGCATGTCTGAG
GTGGCAGCATGTGGTGATCTGATTGGCCAATGATCAAATTACTACCGCAA
GACCAGACGCCCCCGCCCCCCTCCCCCGTCATTGCAACGTTTTCCCTCGT
ACTCCCTACCCCCGTAGAGATGGGTGGGGTGGTGACCGAAGAACAGTGCC
GTACGCTCGCCGACTACCTCTCCCCAAGCGTCGGAGGACAGTACCTTCTC
CCGACAGCGTGCTCCAAACTCCTCAACAAAGGCGACGGCACGGACAGGGC
CAAGATGAACGACGCCGAGGTCTTCGACCGCCTCAAGAGGCGGCCAACCG
TCATGGCAAAGGAGGGCTTCCCCCCTACGATATGCTGACTGGTCCCTTGT
CCGACAGCTGCGGGGGCGGCGGCACGTGCTGACGCGAGCGGGCTTCCCCC
CCTTGCCCTCACCACGCGGGCTTCCCAGGCGTTGATTAATGTATTTTCTT
CGCAGAGTCCGCACGTTTGCGTCAATCAAGAGAGACGCTGCCGAATGCAG
GCAGGTGGTGCCATGCGCTTGTGTTTAGAAGGTGTGCACGAGTCTTCTCT
TGAACTGTTCCAAGCATCGAGCTAGCGGCATGGACAGCGCATTTAGCGGT
ATTTGTATTCCCAGTGCGGCGCGTTTTGGTGGCGTTTCTGCGGAAGGCTG
GTGCAAATCAGCTGGCCGACTGTATATTCCTGTGACGATGCCGGCCGGAA
GAGCACCTTGTTTACGAGATGTTCACAACTGCCTTTAGTGGTAACCAATT
GTGAGGAAAACCCGCCTCGTCTATTTACGGGGATGGAGGGTGTAAGGGCA
CTTGGGCCGGTATGTTGGAGATAATTTTGCGTGGGACGGTTTGTACTAAC
CGAAACGCATGGCTGGGAGTTGTAAGGCGATGGCGTCTATCGCTCCTAAA
ATGCTGGCGCGCTTCACAAGGATAGTACCAGATGGGGGATGGGAGAGCTT
ATAGACGGAGACACAAGCCATGCGGCAAAGTGATTTATATATTTGATGTT
TTTGAATGACGACAATAGAGGTTCGTGGGGGAGGATGGCCGGTGGCTTCT
TTTTTTAGATTTTTTCGGTTCATAATGCTTTTAGACAAACGTGATGAGAG
GCCTGAGTGTGCGGCGCAAAAGTGTGCAACGACACCTCTCCCAGCACGTT
TCACGAAAAGCGTATTTTGCCAAACGCAGAAAAAAGAGGTGAACTTCGCA
GAATGCTTGGCACAATGAAGAACACAACCGCGAGCAACTGCACATGTTCA
TTACCCCAAGTTTTCCGTTTTTCCAAGACCGCCCGCCCGCCACGCGGGTG
TGGTGTTCACACACGGGACTTGAGGACGAACGTCAGCAGCAAAGCACACG
CGGTAGCGTAAAACGCTCGATTCTTTATTTTCCTCTATATCAAGGCGGCC
TGTTGGGTAGAAGGGGGCCTCTCCTTGGCCCTATCGTACTGTAGATGCAA
ACTTTATACCTGTGCCGAACATTACTCTGTTCTTCGTCGACGGAATCTGG
CACGCTGGGCATACATGTGGCAGTGTTGAGCTCCTAATAGCCGTTTAAGC
TGAGGCATGTCGTCCACAGCGCTCGCGACGGTTTTCAGCTGCCCTTCACC
CTCAAAAGGACGTCCTACACCCGCCAATTCACCCATCGTCTAGATACAAA
ATCCCAGAGTAAAAGGCCCCACGTTCAATGAATCTGGGTACCGTCATCTT
ACGTACATTGAAGTATGTACCATAGACACACTTCGAGAATATTGTAAATA
TGTACGTACATGAAAAAAAAAAACGAAGAAAAAAAAGCCGTGGCGATTCA
CGCCCCACCAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig801:25961..29071- >mRNA_L-elsbetiae_contig801.16996.1 ID=mRNA_L-elsbetiae_contig801.16996.1|Name=mRNA_L-elsbetiae_contig801.16996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig801:25961..29071- (Laminarionema elsbetiae ELsaHSoW15)
ATGATTCGGCGAAACAGCCTGCGCAACGAGGTGGACGGGTCTTTCGAGGA
GTTAGAGGACGTCGAGGACAGCAGCGACACGCCTCCACTAAGCAACAATG
ATTCGGCGAAACAGCCTGCGCAACGAGGTGGACGGGTCTTTCGAGGAGTT
AGAGGACGTCGAGGACAGCAGCGACACGCCTCCACTAAGCAACAAGTACC
TTCTGAAGCACCAGGAGTGCGTGCTTCTGAACCGTGTTCTCTCCGACAAG
ACGAAGTTGCCCCCGGCCTGCTTCGCGCCGCCGAGCGCGAGAGCAGTGCG
GAGAGTCTCCACGCGGCCGAAAGCGCCCAAGCCGGTGCCACAAGACGAGA
GCGCCATAGGAGTTCTCGTGCGGCGAATTACGGGCGCTGTGCAACCGGTA
CTCAGCAGCTTGAACCCTTCGCATGCCCCCAAGAAAGAGTACCTTCTGAA
GCACCAGGAGTGCGTGCTTCTGAACCGTGTTCTCTCCGACAAGACGAAGT
TGCCCCCGGCCTGCTTCGCGCCGCCGAGCGCGAGAGCAGTGCGGAGAGTC
TCCACGCGGCCGAAAGCGCCCAAGCCGGTGCCACAAGACGAGAGCGCCAT
AGGAGTTCTCGTGCGGCGAATTACGGGCGCTGTGCAACCGGTACTCAGCA
GCTTGAACCCTTCGCATGCCCCCAAGAAAGAGATGGGTGGGGTGGTGACC
GAAGAACAGTGCCGTACGCTCGCCGACTACCTCTCCCCAAGCGTCGGAGG
ACAGTACCTTCTCCCGACAGCGTGCTCCAAACTCCTCAACAAAGGCGACG
GCACGGACAGGGCCAAGATGAACGACGCCGAGGTCTTCGACCGCCTCAAG
AGGCGGCCAACCGTCATGGCAAAGGAGGGCTTCCCCCCTACGATATGCTG
AAGATGGGTGGGGTGGTGACCGAAGAACAGTGCCGTACGCTCGCCGACTA
CCTCTCCCCAAGCGTCGGAGGACAGTACCTTCTCCCGACAGCGTGCTCCA
AACTCCTCAACAAAGGCGACGGCACGGACAGGGCCAAGATGAACGACGCC
GAGGTCTTCGACCGCCTCAAGAGGCGGCCAACCGTCATGGCAAAGGAGGG
CTTCCCCCCTACGATATGCTGA back to top
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