mRNA_L-elsbetiae_contig800.16988.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig800.16988.1
Unique NamemRNA_L-elsbetiae_contig800.16988.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig800.16988.1 vs. uniprot
Match: D8LQ32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ32_ECTSI)

HSP 1 Score: 452 bits (1163), Expect = 5.990e-147
Identity = 289/522 (55.36%), Postives = 334/522 (63.98%), Query Frame = 1 
Query:  106 WETEAAQACAEASNAYLGRMVQAATALNARSRSDGDGRCGEHVAAVGLDGEDAGFWVFAFLSDVLKCLRKDKWSCGDS-TFVTGGNPKRKRDGEATGIKVVSYSPPXXXXXXXEAVGTVDVSDGDGRGSSGLVVDISALAHLVSAFPVGRGKRAMDLALKWLEVTQLLMEAAETRWHDVLADIFRSVPPSLWRLASRPGSLLPLKEPSRSPGCAFVEVDGADGALSQAMLTLVFRIVRCGDVPGSLLAPGVVCPGGFCENSEGNTDAGGEMRPEERPQATRPWSTAEEALAATAFAXXXXXXXXXXXVGFAGRLVRLFSDQDDALVDMLIQNLYIFHNTRPMGGEQETIHERSTSS--SPGLRNLYDSILHPGTLFAALLSEVRFDSGVLLDWLISPETKFLQYLTMLLRLAVAEWSDFAVSVSCTRSSVFESVCGVSAAVRAIEREKMEXXXXXXXXXXVLSEEEAGRLGKVVSCLSGLVASARGLENNGLVPYSLAPLLRRIDQVVSLYEDCGDADEVED 1662
            WET AAQACA  +  YL  MV+AATAL    R+   G          L G DAGFWV + +SD+LKCLRK  W  GD  +FV     KRKRD +  G +  S  P        E +                  D+  L+  V A PVG G  +MD+ALKW+EVTQLL+EAAETRW  VL ++ RSVPP+LWRLA+  GSLL  +EPSRSPG AFVEV GADGAL+QAML LVFRIVR GD  G      +V  G    N +   D   + R        +PW+TA EAL ATA A           +GFAGRLVRLF+DQDDALVDML+ NL IFHNT     E +T  +R  S    P LR LY   LHPG LFAALL EVRFDSGVLLDWL SPET FLQYLT+LLR AVAEWSDFA  VSC +  V E   GV A V+  + EK  XXXXXXXXX VLSEEEA RLG+ +SCL GLVASAR L+ NGLVPY++APLLRRIDQVVSLYE+CGDA++ E+
Sbjct:   73 WETIAAQACAREATTYLVGMVEAATALMLGGRN---GATSSEDVEGSLGGADAGFWVLSLVSDILKCLRKRNWRFGDPISFV---RCKRKRDSDTGGPETASGLPSSTTAVVSEQL------------------DVPGLSEAVPAVPVGSGMDSMDIALKWVEVTQLLVEAAETRWRSVLVELLRSVPPTLWRLANN-GSLLLQEEPSRSPGSAFVEVRGADGALAQAMLGLVFRIVRLGDERGPFHVAALVDVGVVPNNEDRTEDL--DKRDRGGAPQNQPWTTAVEALVATATARDDDQESC---LGFAGRLVRLFADQDDALVDMLLLNLRIFHNTTK--AELDTGSDRPASDFPPPALRTLYRGALHPGVLFAALLFEVRFDSGVLLDWLTSPETAFLQYLTLLLRFAVAEWSDFATRVSCAKGVVLED--GVDA-VQNTQHEKETXXXXXXXXXLVLSEEEANRLGRAMSCLGGLVASARALDRNGLVPYNIAPLLRRIDQVVSLYEECGDAEQEEE 559
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BLAST of mRNA_L-elsbetiae_contig800.16988.1 vs. uniprot
Match: A0A6H5KU10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU10_9PHAE)

HSP 1 Score: 429 bits (1102), Expect = 1.830e-136
Identity = 291/560 (51.96%), Postives = 337/560 (60.18%), Query Frame = 1 
Query:    1 PERSNHDASASQAARPTDDSAKAALTSTNDEVGCEWETEAAQACAEASNAYLGRMVQAATALNARSRSDGDGRCGEHVAAVGLDGEDAGFWVFAFLSDVLKCLRKDKWSCGDSTFVTGGNPKRKRDGEATGIKVVSYSPPXXXXXXXEAVGTVDVSDGDGRGSSGLVVDISALAHLVSAFPVGRGKRAMDLALKWLEVTQLLMEAAETRWHDVLADIFRSVPPSLWRLASRPGSLLPLKEPSRSPGCAFVEVDGADGALSQAMLTLVFRIVRCGDVPGSLLAPGVVCPGGFCENSEGNT------DAGGEMRPEERPQATRPWSTAEEALAATAFAXXXXXXXXXXXVGFAGRLVRLFSDQDDALVDMLIQNLYIFHNTRPMGGEQETIHERSTSSSPGLRNLYDSILHPGTLFAALLSEVRFDSGVLLDWLISPETKFLQYLTMLLRLAVAEWSDFAVSVSCTRSSVFESVCGVSAAVRAIEREKMEXXXXXXXXXXVLSEEEAGRLGKVVSCLSGLVASARGLENNGLVPYSLAPLLRRIDQVVSLYEDCGDADEVED 1662
            PERS+H  +      P D + KAA+ + N      WE  AAQACA  +  YL  MV+AATAL    R+   G          L G DAGFWV + +SD LK LRK  W  GD + +     KRKRDG+A G +  S  PP       E +                  D+  LA  V A PVG G  +MD+ LKW+E   LL+EAAETRW  V+  + RSVPP+LWRLA+  GSLL  +E SRSPG AFVEV GADGAL+QAML LVFRIV+  D  G      +V       N E  T      D GG       PQ  +PW+TA EAL ATA A           +GFAGRLVRLF+DQDDALVDML+ NL IFHNT     +  +    S    P LR LY   LHPG LFAALL EVRFDSGVLLDWL SPET FLQYLTMLLR AVAEWSDFA  VSC R    E   GV A V+  E EK     XXXXX  VLSEEEA RLG+ +SCLSGLVASAR L+ NGL+PY++APLLRRIDQVVSLYE+CGDA++ E+
Sbjct:  158 PERSSHPTANHLPGLPGD-APKAAIAANNG-----WEKIAAQACAGEAANYLVGMVEAATALMLAGRN---GAASSEDVEGSLGGADAGFWVLSLVSDSLKYLRKCSWRFGDPSSIV--RCKRKRDGDAGGPETASDLPPSTTAVVSEQL------------------DVPGLAEEVPAVPVGSGMDSMDIVLKWVE---LLVEAAETRWRSVMVGLLRSVPPTLWRLANN-GSLLLQEESSRSPGSAFVEVRGADGALAQAMLGLVFRIVQLADERGPFDVAALV-DARVVPNDEDRTKELDKRDRGG------APQ-NQPWTTAVEALVATATASADDQESC---LGFAGRLVRLFADQDDALVDMLLLNLRIFHNTAKAELDAGSDRPGSDLPPPALRTLYHGALHPGVLFAALLFEVRFDSGVLLDWLTSPETAFLQYLTMLLRFAVAEWSDFAARVSCARVVALED--GVDA-VQNTEDEKDMGEEXXXXXELVLSEEEANRLGRAMSCLSGLVASARALDRNGLMPYNIAPLLRRIDQVVSLYEECGDAEQGEE 670
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BLAST of mRNA_L-elsbetiae_contig800.16988.1 vs. uniprot
Match: A0A3M6TVD9_POCDA (LINES_N domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TVD9_POCDA)

HSP 1 Score: 71.6 bits (174), Expect = 4.570e-9
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 1 
Query: 1042 LVRLFSDQDDALVDMLIQNLYIFHNTRPMGGEQETIHERSTSSSPGLRNLYDSILHPGTLFAALLSEVRFDSGVLLDWLISPETKFLQYLTMLLRLAVAEWSDFAVSVSCTR 1377
            L+ LF DQDD LV++++  L +F          + +H+   S    ++ L    L+P  LFAA    V FD  +LLD LIS ET+FL+YLT  LR  V++W++F  S++  R
Sbjct:  528 LIALFVDQDDELVELMLALLLLF----------QELHKNFPSDEISMKILQQ--LNPHWLFAAFTESVGFDPSLLLDLLISSETRFLEYLTKYLRFVVSDWTEFTQSLATYR 627
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BLAST of mRNA_L-elsbetiae_contig800.16988.1 vs. uniprot
Match: UPI001CF196E7 (uncharacterized protein LOC114953806 n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF196E7)

HSP 1 Score: 71.2 bits (173), Expect = 6.000e-9
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1 
Query: 1030 FAGRLVRLFSDQDDALVDMLIQNLYIFHNTRPMGGEQETIHERSTSSSPGLRNLYDSILHPGTLFAALLSEVRFDSGVLLDWLISPETKFLQYLTMLLRLAVAEWSDFAVSVSCTRSS 1383
            F   L+ LFSDQDD LVD L+  L ++         QE    R+   S  L N+ + ++ P +LF   +  + FD  VLLD LIS ET+FL+Y+ + L   V +W  F++SV   RS+
Sbjct:  519 FCSLLIALFSDQDDELVDALLFLLLLY---------QEIC--RAFPFSESLTNIQEKLI-PHSLFMEFMQSIDFDHSVLLDLLISSETRFLEYIVIYLHFVVNDWKSFSLSVGKPRSN 624
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BLAST of mRNA_L-elsbetiae_contig800.16988.1 vs. uniprot
Match: UPI00112E7C15 (protein Lines homolog 1-like n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112E7C15)

HSP 1 Score: 63.5 bits (153), Expect = 1.360e-6
Identity = 35/110 (31.82%), Postives = 56/110 (50.91%), Query Frame = 1 
Query: 1024 VGFAGRLVRLFSDQDDALVDMLIQNLYIFHNTRPMGGEQETIHERSTSSSPGLRNLYDSILHPGTLFAALLSEVRFDSGVLLDWLISPETKFLQYLTMLLRLAVAEWSDF 1353
            +G A   + +F +QDD +++ +   L ++     +  E   +       +PG R  +D   +P  LF   L  + FD+ VLLD+LIS ET FL+Y    L+L   +WS F
Sbjct:  438 LGHACEWISIFIEQDDDMLEAMKTLLTLYLACERLCSESPAVQHHGEEDAPGSRLTHDGGYNPHCLFLFFLHNIVFDATVLLDFLISSETCFLEYFVRYLKLLTRDWSHF 547
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BLAST of mRNA_L-elsbetiae_contig800.16988.1 vs. uniprot
Match: A0A8M9Q898_DANRE (protein Lines homolog 1 isoform X1 n=5 Tax=Danio rerio TaxID=7955 RepID=A0A8M9Q898_DANRE)

HSP 1 Score: 60.8 bits (146), Expect = 8.230e-6
Identity = 65/223 (29.15%), Postives = 94/223 (42.15%), Query Frame = 1 
Query: 1051 LFSDQDDALVDML--IQNLYIFHNTRPMGGEQETIHERSTSSSPGLRNLYDSILHPGTLFAALLSEVRFDSGVLLDWLISPETKFLQYLTMLLRLAVAEWSDFAVS----------------VSCTRSSVFESV-CGVSAAVRAIER-------------EKMEXXXXXXXXXXVLSEEEAGRLGKVVSCLSGLVASARGLENNGLVPYSLAPLLRRIDQVVS 1623
            LF++QDD +++    +  LY++              +RS S S     +     +P  LF  LL  + FD  VLLD+LIS ET FL+Y    L+L   +W+    S                +S   SS   +V CG SA    +E              E  E          +L EE    LGKV++CL  L  +   L N GL PY+ + LL+ ++ V S
Sbjct:  395 LFAEQDDDMMEATNTLMALYLYQ-------------KRSCSDS----GVCVWGFNPHCLFILLLRSLSFDHSVLLDFLISSETCFLEYFVRYLKLLCQDWTGLCRSSQHIEDGGGDAKRGSDLSIPASSAAAAVPCGESATGNQVETALVSRLVDYGSSDESEEADNVDCGASVMLVEESL--LGKVLACLMDLRTAVSRLHNRGLFPYNPSSLLKLLNGVES 598
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BLAST of mRNA_L-elsbetiae_contig800.16988.1 vs. uniprot
Match: UPI000154FF1B (protein Lines homolog 1 isoform X2 n=2 Tax=Rattus TaxID=10114 RepID=UPI000154FF1B)

HSP 1 Score: 60.1 bits (144), Expect = 1.250e-5
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 1 
Query: 1042 LVRLFSDQDDALVDMLIQNLYIF-HNTRPMGGEQETIHERSTSSSPGLRNLYDSILHPGTLFAALLSEVRFDSGVLLDWLISPETKFLQYLTMLLRLAVAEWSDFAVSVSCTRSSVFESVCGVS 1410
            L R+F +QDD +++    +L I+ H TR    E +T    +      + + +    +P  +F   L  + FDS VLLD+LIS ET FL+Y    L+L   +W  F  +  C   +  ES CGVS
Sbjct:  210 LSRVFIEQDDDMLEAAKASLSIYLHLTR----EWDTSTSLTPEKEAWIHSTHGHGYNPHCIFLFFLKNIAFDSTVLLDFLISSETCFLEYFVKYLKLLQKDWGHFLST--CQFFAAMESQCGVS 327
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BLAST of mRNA_L-elsbetiae_contig800.16988.1 vs. uniprot
Match: D3ZVQ9_RAT (Lines homolog 1 n=2 Tax=Rattus TaxID=10114 RepID=D3ZVQ9_RAT)

HSP 1 Score: 60.1 bits (144), Expect = 1.600e-5
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 1 
Query: 1042 LVRLFSDQDDALVDMLIQNLYIF-HNTRPMGGEQETIHERSTSSSPGLRNLYDSILHPGTLFAALLSEVRFDSGVLLDWLISPETKFLQYLTMLLRLAVAEWSDFAVSVSCTRSSVFESVCGVS 1410
            L R+F +QDD +++    +L I+ H TR    E +T    +      + + +    +P  +F   L  + FDS VLLD+LIS ET FL+Y    L+L   +W  F  +  C   +  ES CGVS
Sbjct:  444 LSRVFIEQDDDMLEAAKASLSIYLHLTR----EWDTSTSLTPEKEAWIHSTHGHGYNPHCIFLFFLKNIAFDSTVLLDFLISSETCFLEYFVKYLKLLQKDWGHFLST--CQFFAAMESQCGVS 561
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BLAST of mRNA_L-elsbetiae_contig800.16988.1 vs. uniprot
Match: A0A1A7X3F4_9TELE (Lines homolog n=2 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7X3F4_9TELE)

HSP 1 Score: 59.7 bits (143), Expect = 1.970e-5
Identity = 42/117 (35.90%), Postives = 57/117 (48.72%), Query Frame = 1 
Query: 1051 LFSDQDDALVDMLIQNLYIFHNTRPMGGEQETIHERSTSSSPGLRNLYDSILHPGTLFAALLSEVRFDSGVLLDWLISPETKFLQYLTMLLRLAVAEWSDFAVSVSCTRSSVFESVC 1401
            LF DQDD L++     L IF  TR   G      + S  S     + Y+   H    F  LL  + FD  +LLD+LIS ET FL+Y    L++   +W  F+ + SC  +S F S C
Sbjct:  403 LFGDQDDDLMEAANSFLSIFLITRRSLGL-----DGSAMSEVACVSGYNPHCH----FVLLLQSISFDHSILLDFLISSETCFLEYFVCYLKVLTGDWQGFSSACSCITASHFGSHC 510
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BLAST of mRNA_L-elsbetiae_contig800.16988.1 vs. uniprot
Match: A0A3Q2E0C5_CYPVA (Lines homolog 1 n=2 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2E0C5_CYPVA)

HSP 1 Score: 59.3 bits (142), Expect = 2.500e-5
Identity = 55/217 (25.35%), Postives = 90/217 (41.47%), Query Frame = 1 
Query: 1051 LFSDQDDALVDMLIQNLYIFHNTRPMGGEQETIHERSTSSSPGLRNLYDSILHPGTLFAALLSEVRFDSGVLLDWLISPETKFLQYLTMLLRLAVAEWSDFAVSVSCTRSSVFESVCGVSAAVRAIERE-----------------------KMEXXXXXXXXXXVLSEEEAGRLGKVVSCLSGLVASARGLENNGLVPYSLAPLLRRIDQVVSLYE 1632
            LF +QDD L++    +L IF + R   G ++     +T +S           +P   F  LL  + FD  +LLD+LIS ET FL+Y    L+    +W  F  + +C   S        S  +R +E +                       K++          +L ++    L + VSCLS L      L+   L PY+ + LL+ +  V +L++
Sbjct:  405 LFGEQDDDLMEAASASLSIFLSCRRSSGLEDHATMEATCASG---------CNPHCHFLLLLQSLSFDHSILLDFLISSETCFLEYFVRYLKYLRGDWRGF--TAACKALSDTHGSEARSRGLRLVEYDSSDESSEETPERDKLSGSTAAEVKLQCESVSSVAAVLLDQDVCRTLDRAVSCLSDLREVVTKLQVKKLFPYNPSSLLKLLAAVENLHQ 610
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig800.16988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LQ32_ECTSI5.990e-14755.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU10_9PHAE1.830e-13651.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3M6TVD9_POCDA4.570e-938.39LINES_N domain-containing protein n=1 Tax=Pocillop... [more]
UPI001CF196E76.000e-938.14uncharacterized protein LOC114953806 n=2 Tax=Acrop... [more]
UPI00112E7C151.360e-631.82protein Lines homolog 1-like n=2 Tax=Rhinatrema bi... [more]
A0A8M9Q898_DANRE8.230e-629.15protein Lines homolog 1 isoform X1 n=5 Tax=Danio r... [more]
UPI000154FF1B1.250e-533.87protein Lines homolog 1 isoform X2 n=2 Tax=Rattus ... [more]
D3ZVQ9_RAT1.600e-533.87Lines homolog 1 n=2 Tax=Rattus TaxID=10114 RepID=D... [more]
A0A1A7X3F4_9TELE1.970e-535.90Lines homolog n=2 Tax=Iconisemion striatum TaxID=6... [more]
A0A3Q2E0C5_CYPVA2.500e-525.35Lines homolog 1 n=2 Tax=Cyprinodon TaxID=28741 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig800contigL-elsbetiae_contig800:16117..22622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score67.8
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog9986.ENSOCUP00000023043
Preferred nameLINS
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0008150,GO:0032501,GO:0050877,GO:0050890
EggNOG free text desc.Lines homolog
EggNOG OGs2CN0S@1,2QT6F@2759,35BP2@314146,38GWU@33154,3BFXB@33208,3CWVD@33213,3JCQG@40674,47Z89@7711,4901Q@7742
COG Functional cat.S
Best tax levelEuarchontoglires
Best eggNOG OGNA|NA|NA
Exons4
Model size2412
Cds size1545
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig800.16988.1prot_L-elsbetiae_contig800.16988.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig800 16279..21917 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816885.7095687-UTR-L-elsbetiae_contig800:16116..162781622816885.7095687-UTR-L-elsbetiae_contig800:16116..16278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig800 16117..16278 +
1691683886.9252121-UTR-L-elsbetiae_contig800:16116..162781691683886.9252121-UTR-L-elsbetiae_contig800:16116..16278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig800 16117..16278 +
1622816885.762818-UTR-L-elsbetiae_contig800:21917..226221622816885.762818-UTR-L-elsbetiae_contig800:21917..22622Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig800 21918..22622 +
1691683886.9781268-UTR-L-elsbetiae_contig800:21917..226221691683886.9781268-UTR-L-elsbetiae_contig800:21917..22622Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig800 21918..22622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816885.7198663-CDS-L-elsbetiae_contig800:16278..167161622816885.7198663-CDS-L-elsbetiae_contig800:16278..16716Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig800 16279..16716 +
1691683886.9365616-CDS-L-elsbetiae_contig800:16278..167161691683886.9365616-CDS-L-elsbetiae_contig800:16278..16716Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig800 16279..16716 +
1622816885.7299988-CDS-L-elsbetiae_contig800:16958..174861622816885.7299988-CDS-L-elsbetiae_contig800:16958..17486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig800 16959..17486 +
1691683886.9464698-CDS-L-elsbetiae_contig800:16958..174861691683886.9464698-CDS-L-elsbetiae_contig800:16958..17486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig800 16959..17486 +
1622816885.7419066-CDS-L-elsbetiae_contig800:17882..179961622816885.7419066-CDS-L-elsbetiae_contig800:17882..17996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig800 17883..17996 +
1691683886.9569795-CDS-L-elsbetiae_contig800:17882..179961691683886.9569795-CDS-L-elsbetiae_contig800:17882..17996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig800 17883..17996 +
1622816885.7520247-CDS-L-elsbetiae_contig800:21452..219171622816885.7520247-CDS-L-elsbetiae_contig800:21452..21917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig800 21453..21917 +
1691683886.967603-CDS-L-elsbetiae_contig800:21452..219171691683886.967603-CDS-L-elsbetiae_contig800:21452..21917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig800 21453..21917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig800.16988.1

>prot_L-elsbetiae_contig800.16988.1 ID=prot_L-elsbetiae_contig800.16988.1|Name=mRNA_L-elsbetiae_contig800.16988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=515bp
MVQAATALNARSRSDGDGRCGEHVAAVGLDGEDAGFWVFAFLSDVLKCLR
KDKWSCGDSTFVTGGNPKRKRDGEATGIKVVSYSPPPPPPPAAEAVGTVD
VSDGDGRGSSGLVVDISALAHLVSAFPVGRGKRAMDLALKWLEVTQLLME
AAETRWHDVLADIFRSVPPSLWRLASRPGSLLPLKEPSRSPGCAFVEVDG
ADGALSQAMLTLVFRIVRCGDVPGSLLAPGVVCPGGFCENSEGNTDAGGE
MRPEERPQATRPWSTAEEALAATAFASADGDDGDGDGVGFAGRLVRLFSD
QDDALVDMLIQNLYIFHNTRPMGGEQETIHERSTSSSPGLRNLYDSILHP
GTLFAALLSEVRFDSGVLLDWLISPETKFLQYLTMLLRLAVAEWSDFAVS
VSCTRSSVFESVCGVSAAVRAIEREKMEEEEEEEEEELVLSEEEAGRLGK
VVSCLSGLVASARGLENNGLVPYSLAPLLRRIDQVVSLYEDCGDADEVED
DDLPVDGVFAKQRR*
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mRNA from alignment at L-elsbetiae_contig800:16117..22622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig800.16988.1 ID=mRNA_L-elsbetiae_contig800.16988.1|Name=mRNA_L-elsbetiae_contig800.16988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6506bp|location=Sequence derived from alignment at L-elsbetiae_contig800:16117..22622+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGAGCGCTCGAACCATGATGCTTCGGCGTCTCAAGCTGCAAGACCCAC
GGACGACTCTGCGAAAGCGGCGCTTACTAGTACGAACGATGAAGTCGGCT
GCGAGTGGGAGACGGAGGCGGCACAAGCTTGCGCCGAGGCGTCCAACGCC
TACCTGGGCAGGATGGTACAAGCGGCAACCGCGCTCAATGCGCGAAGCCG
AAGCGACGGCGACGGCCGTTGCGGCGAGCATGTCGCGGCGGTAGGCCTCG
ACGGGGAAGATGCTGGATTTTGGGTCTTCGCGTTCTTGTCCGACGTGCTG
AAATGTCTACGCAAGGACAAGTGGAGCTGTGGAGATTCCACCTTTGTCAC
GGGAGGCAACCCTAAAAGAAAGCGCGATGGTGAAGCGACAGGGATCAAGG
TCGTCTCATATTCACCTCCTCCTCCTCCTCCTCCTGCCGCTGAGGCGGTC
GGGACGGTGGATGTTTCCGATGGCGACGGTCGTGGTTCCTCTGGGCTAGT
GGTTGATATTTCGGCCTTGGCGCACCTGGTTTCCGCGTTTCCTGTGGGAC
GCGGCAAAAGGGCCATGGACCTTGCGCTCAAATGGCTGGAGGTTACACAG
GCAAGTGTTTTATTTTGCTTGTCACAAAGAGTGACACCTGCAGTTCGAAT
CACCAGCTTTGCAGTGTGTGGGTGAGTGTGTGTGATTTTGTCTTCGGTCT
TCCGCAGGTCGGAAAAAAACTGCTGTTGTGTACCATTCAGCCTTTGGTTC
AGATGCTATACCCAGCACATGTGCGTTGAACATGACCCGCCACACTCCCT
TTGCTACAACGATTTTGATTCGTCTATTTTTCTGATCGTTAGTTGCTGAT
GGAGGCGGCGGAGACACGATGGCATGACGTGCTGGCCGATATATTTCGTT
CGGTGCCTCCCTCTCTGTGGCGACTGGCAAGTCGCCCGGGATCGCTACTG
CCCCTGAAGGAGCCGTCGCGATCGCCGGGCTGCGCATTCGTGGAAGTGGA
CGGGGCAGACGGAGCTCTGTCGCAGGCGATGCTTACCCTCGTGTTCAGGA
TCGTGCGGTGTGGCGATGTTCCAGGATCCCTTCTTGCGCCGGGCGTCGTG
TGCCCTGGTGGCTTTTGCGAAAACAGCGAGGGGAACACGGACGCAGGGGG
GGAAATGCGCCCGGAGGAAAGGCCACAGGCCACGCGGCCATGGAGCACGG
CGGAAGAAGCTCTGGCGGCTACGGCTTTTGCGAGTGCCGATGGCGATGAT
GGTGATGGGGACGGGGTGGGGTTCGCCGGGCGGCTGGTGCGGCTTTTTTC
CGACCAGGATGACGCCCTGGTGGACATGCTCATCCAGAATTTGTACATAT
TTCACAACACCAGGCCGATGGTAAGTGCCAAGCGTGGCTATATTGCAGCC
CGTGCTACCCTTTTTTTTCTTCGCATCTACTTCCAGTGCTCGATACCCTA
CTCCCCAGCAACCAATCGTAGTGCATGCATCGTCTCGAGCGATGTTCTAT
TTGGGAATGGGCTGCGACTGCTGTCGGGATACGGAAAGCAACGAATGATC
TTGTTTGGGCAGGAACGAGATCCGTGCAAGCGGACGGTGCTGAACTCTTT
GCCAGGGATCGAGGAGGCAGTTTCACAGCGCGCCACTTCCTCCCTCCTTG
ATTTTTTCTTGCTGCGAAGCCACCACCGATTATACTCGAATTTCTTGGAA
GTGCATATTGGAAATCGTTTCCTCGGAGTTGACGACGACTTTTCTCCCCC
CCCCCTATCTTATCAGGGGGGCGAGCAGGAAACCATCCACGAGCGCAGCA
CCAGTTCCTCACCTGGGCTGAGGAACCTGTACGACAGTATTTTGCACCCA
GGAACCTTGTTCGCGGCGCTGCTGTCAGAGGTATGGCTTGTTTCTTTTCC
GCACATCGCAGAATGAATGCTTTCTACTGTGCATCTTTCCAACTTTTAAG
TTGATTGTTCTCTGGCGCCTTCGCTTTTTCGGCTACATATGTTTTTTTGT
GACAGAAAACTTGCGATCGAAAACGTGACCCCTATTCTAATACTAAAACC
TTGCCCATATATTTATGAAATATGTAGAAACCAAACGCTTCGTCTTTGCA
GAGACACCCCAACACACAACAGCAGCTACTCCCTACCAAGTGTCGTCCTC
AATATCGGAGGTTTTGTAGAGCCGTCAACAAAACGCGCCTCTTGGGCTCC
AAGCATATTATCCACCCGGCCGACAAAGTACCGGTGACAGAATGCATATG
TAGGTACATACCACAACGGGCGTTCATGTGAGGATTTCTGGCCGAGAGCA
GGCGTGGTCGTGGCGCAAACAAAGTGAGTGTGGCAGACCAACAGACACCC
AAACCCTCTCCCTCTTCCTCGCGTGCCTTCCCTGCTCCTCGCATCCCGTC
GTGTCAAATCTTTCGCATCAAAAGCTCTCTTTCTCGCGTACCTTGGTCCC
CCTCACAGCGCATATATATGGCGCCTGGTCATCTAAACAGTCACCGGCTG
TGCTGTGTGTGTAAGAGAGATAGCTGCCTAGACACGCTTCATTCCCTGTG
CGTCGATAGTGCGAAAAGTGTTCCGGACTTTGCGAGCGCAACGAGTACGA
GAGATGTGACGCGGCTACTTTCCGGCCGCGAAGAGATGACAAGACTCTTA
TAAAGATACACTGGAGAAATAGATGTGAGCATCTCACCCTGTAGCGGTCA
AGTACCCTTGCACCACACAATCAATACCCACACCATGCCGACGAGGATTC
CTTTTATCCCTTATGTGCTGAGAGGTGAACTCTCTGTCTTGCTGTCTTGC
GGACTTTTGAAAAAACGTTGCTCCCAGACATGATGCAGATTTTGTAGATG
CGCTTTCAAAAACTGCGATGTAAGAAGTGCCTCGCTACATATCTGTCACA
CCTATTCCCAAGGCACATTCGGAGGAGGATGTACAAACAGCTCTAGCACG
AGAGGTTGCTGCCTGTGTCTGCAACCCTCGGTTAGGGCAGTTCTCATGGA
ATCAGAAAAGCCGATGAGAAATGGCTTCTTTTTGCCTGATTCGCGGAGAA
ACCCCTTCGGAGGGCAGAAAATGCCGATGAGAAATGGTGCAACTACCCGA
AAACGCACGGCACCACCGATTGCTCGCCCTCCTGCTCACGGATCGCACTC
TAGCCTTCAGAACACAAGCTCCATGTTGATGAGCGTCACAAATGTAAAGC
AGAGTCTCTTTTGGTGGATTGTGGGGCAAATGCGAACGACCAACGGCCAG
CTGAGTGAATCTCAGAAAACGATTCTTCGGTTAAAAAACTGGCCCTTTCC
GACGGCGGTGGGAAATGGTGCAACACCGATTGCTCGCTATCCTGCTCACA
GATCGCTCTCAAACGTTGAGAACATGAGCTTCATGTTACTGACCGTCACC
ACACGAGGCAGATTTGCTCTAGGTGGCTTGTGTAGCAAGTGCGAAGACAG
AACCCACGACGAGATGGGCTCGAATTAAGCATAATTTCTTAACTGCGTCA
GAGTTTCTCCGCGTATCGGCATAAAACCATTTATGGTCGACTTTCTGATC
CCATAAGAACTGGCCTTAGATAGCCGCCCCCTCGAGCTTTGCAGACATCC
CCGTTGCTTCCTACAAAAAATCATCTGTGTGGTATGATGGTCATTACCAG
CTGCCATTTGTGGGGGTGCAGCGCTACTCTGTGTGGTGTGTTGCTTGCTG
TTCTTCCGGATTTACGCTCTCTCTCCCTGGTTTTTCGGCGGTAGGGTCCA
GCTGAGAGGACTCAATCAATTGTTTCGTGCAACGCGAAAAATTCATACAA
AGAGGCGCTTGCTGCGGTTTCAACGACTACTTATTGGCGCTCTAACTCTG
CGAGATTGTGTGTTTGAACTCGATTTCAAGATGTATTTGGCATATAATAG
TGCTCACTTGAGCCTCCAGGATTCCCTTCCACGCTTCATTGGTTGGTTGA
CCAAAATGTGACAAACCAATGGCAAAAAAGATACCCTCTGCCCGCGTACA
TGTAGACTATGCACGTAAATACTGATGTAGGAATATACTTTATATAGGAT
GTAGCCTAGTTAGTTTGTGTACTTCAGGACGGCGGACGGATAGAACTTTT
ACCTAATGGTCATGATAAGGTATCAGCGATGCTGCTTTCATGCGGACCCT
CGTGCGAGTGTAGAACGTGTCATTTTTTGGACTGGCACGGATGTGTGCCT
CGCGTCAACGAGACTATGTAGGTAATATGGACAGTGTTACCGGCCCGATC
ATAAGACTCTGGTTTTAAGAAAATCCAGCCTCAGAATTTTCAGAAATTAA
GAAACGGCCGAGGCTGGGCATCTGCTGCAACATAAGAGAGACGAACCCTT
CCACTAGCTGACAACTAGCGACCCCACTATGCCCCTACCAGTACAGTTAG
GTGCCCGTGTACACCATGTCAAAATACGTGTGGCATCAAATCTGGATTAT
TTCGGCGTTTCAGGGGTTACGGTGGAAATTCCCTCAGCACCGCAGTGTCG
GATTGGTCGCCAGACATAAAGAAAAACGCGTTTAAGAAGAATGGGCTGTC
TTGGCGACAAATATTAGAAAGACGCGTTTAAGAAACAGTGCTCGATGACT
GCAGCACCATAAGAAACCCAGCCTGGGCCGGAATTTCAGTTTCTTGTGGT
CGGGCCGTACTGTATACGTGTACATGCATGTACCCCGGATTCTTAGGGCG
GACATTCGTTTTGTCAAAATACAGCAGGGAGTGCCCAATCGGCTTCGTTA
CGTATATCGCAGAGAGGGTTCGTGTGAGGTTTTCTGACCGAGAGCAGGCC
TGGTCGTGGCGAACGCCTGTAGCACTCTCTCCTGCTATTACCCTTCACGC
CGGCAGTTGAGAAGCCGACGCGCGTGTATTACACCAATAAAAAAACTAAA
AATAAAGTTGGAAAGCACGATGCCACGCAGAGCAATCTATCTCTATATTT
AGTCGAGTTTTTTTTTCAAAGTACACTTTAGTCTGGTAGACTATAGTCTA
GTCTCGTTCATTCTTTTGCACGATTATTGACTCTGCCTGACTTCTCCGAC
TTGAAATTTTTGAAACGGCTGGCTTGGTTCGGACATTTCTGCGAGTCAAG
CATGATGGGGCTGTGTTTTGTGGTCCGTCTCACCTACAATACTCCCATTA
CAGAGGGACTTCTTGAATTCTACTTAATTTTGTGAAGAATCACTTTGCGT
GTTTCCTACCTAGGTTTATCGCTACGTACTGCTGTTCTGGGTGGATAATA
AGGTGTTGCACCAGCAGAGCATTATTATATGTGCACCCATCCATCCATTG
AGACGGTTCGCCTTTGCCTCTGCGAAACACTTCCAGGTGCGGTTCGATTC
GGGTGTGCTGCTGGACTGGTTGATATCGCCGGAAACGAAGTTTCTGCAGT
ACCTCACCATGCTGCTGCGCTTGGCCGTCGCCGAATGGTCCGATTTCGCC
GTTAGCGTGTCTTGCACAAGATCTAGCGTATTTGAAAGTGTGTGTGGTGT
GAGTGCAGCCGTCCGAGCAATAGAACGAGAGAAAATGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGTTGGTTCTGTCCGAGGAAGAAGCAGGCCGGCTG
GGTAAGGTGGTGTCATGCCTGAGCGGGCTGGTTGCGAGCGCGCGGGGCCT
GGAAAATAATGGACTCGTGCCTTACAGTCTCGCGCCTCTGCTTCGGCGGA
TCGATCAAGTGGTGTCGCTATATGAGGACTGCGGCGATGCCGACGAAGTG
GAGGACGATGATCTACCTGTTGATGGGGTGTTTGCAAAGCAGCGTCGCTA
AGAAAGGGTTGTAATATAGAAAGAAGGTAAACGGAGTGGTTCGGAATGGA
TCTCTCAAAATGTATGTGTATGTGTGGGCGTTCGGCTGTGGTTCGTAACT
TCAGCAAGGCAGAGTCGTTATGTGAATCAAGTTGAAAGGTTATCTCATCT
ACAGCATACGCCGGGTGTATGTTCAATTAAGTTGGAAAATATGAAAATAT
CCTATGTATCTACAATTAAACCGGTGTGTTCGTGTGTGTGTGTGTGTTGT
TTTTTTTCCGTCCCATTTATTCGGGCGCCTGCCACACGTTTCGGTGTGTG
TACAACATGCACATTGCGGTGCTGCTTCTCAGTTCTTTGTACAGCATGAC
GTATCCGCCGGGGTCACACAGGAGGCGGTAAACTGGGTTTTTTTCCTTCT
TTTTATTTTTTATTTTTTATTTTTGTCTCTAACTCCAGTCGTATGTATAC
CTTTTGTGAGGGTGCACACAGTGGCGTTGTAATCGAGTGGTTTGTTTCTA
TCCTGGGCATTTGTATAGTGATATTTTCTTTTTTGCCCCACCTTCCTCCT
GCGGTGCTTGCCTTGATTTTTATCGCGAGAAGGGTACGGCTATCCCTTCC
CTCGTCAACGGTGAAGTCGAATTCTGTACATAGATACATACATGGACGTG
CGTGGTGGTGTGTAGATAACGTTTGTGGGGAAAACCTGCGACACTGCTGT
CCGACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig800:16117..22622+

>mRNA_L-elsbetiae_contig800.16988.1 ID=mRNA_L-elsbetiae_contig800.16988.1|Name=mRNA_L-elsbetiae_contig800.16988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3090bp|location=Sequence derived from alignment at L-elsbetiae_contig800:16117..22622+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTACAAGCGGCAACCGCGCTCAATGCGCGAAGCCGAAGCGACGGCGA
CGGCCGTTGCGGCGAGCATGTCGCGGCGGTAGGCCTCGACGGGGAAGATG
CTGGATTTTGGGTCTTCGCGTTCTTGTCCGACGTGCTGAAATGTCTACGC
AAGGACAAGTGGAGCTGTGGAGATTCCACCTTTGTCACGGGAGGCAACCC
TAAAAGAAAGCGCGATGGTGAAGCGACAGGGATCAAGGTCGTCTCATATT
CACCTCCTCCTCCTCCTCCTCCTGCCGCTGAGGCGGTCGGGACGGTGGAT
GTTTCCGATGGCGACGGTCGTGGTTCCTCTGGGCTAGTGGTTGATATTTC
GGCCTTGGCGCACCTGGTTTCCGCGTTTCCTGTGGGACGCGGCAAAAGGG
CCATGGACCTTGCGCTCAAATGGCTGGAGGTTACACAGATGGTACAAGCG
GCAACCGCGCTCAATGCGCGAAGCCGAAGCGACGGCGACGGCCGTTGCGG
CGAGCATGTCGCGGCGGTAGGCCTCGACGGGGAAGATGCTGGATTTTGGG
TCTTCGCGTTCTTGTCCGACGTGCTGAAATGTCTACGCAAGGACAAGTGG
AGCTGTGGAGATTCCACCTTTGTCACGGGAGGCAACCCTAAAAGAAAGCG
CGATGGTGAAGCGACAGGGATCAAGGTCGTCTCATATTCACCTCCTCCTC
CTCCTCCTCCTGCCGCTGAGGCGGTCGGGACGGTGGATGTTTCCGATGGC
GACGGTCGTGGTTCCTCTGGGCTAGTGGTTGATATTTCGGCCTTGGCGCA
CCTGGTTTCCGCGTTTCCTGTGGGACGCGGCAAAAGGGCCATGGACCTTG
CGCTCAAATGGCTGGAGGTTACACAGTTGCTGATGGAGGCGGCGGAGACA
CGATGGCATGACGTGCTGGCCGATATATTTCGTTCGGTGCCTCCCTCTCT
GTGGCGACTGGCAAGTCGCCCGGGATCGCTACTGCCCCTGAAGGAGCCGT
CGCGATCGCCGGGCTGCGCATTCGTGGAAGTGGACGGGGCAGACGGAGCT
CTGTCGCAGGCGATGCTTACCCTCGTGTTCAGGATCGTGCGGTGTGGCGA
TGTTCCAGGATCCCTTCTTGCGCCGGGCGTCGTGTGCCCTGGTGGCTTTT
GCGAAAACAGCGAGGGGAACACGGACGCAGGGGGGGAAATGCGCCCGGAG
GAAAGGCCACAGGCCACGCGGCCATGGAGCACGGCGGAAGAAGCTCTGGC
GGCTACGGCTTTTGCGAGTGCCGATGGCGATGATGGTGATGGGGACGGGG
TGGGGTTCGCCGGGCGGCTGGTGCGGCTTTTTTCCGACCAGGATGACGCC
CTGGTGGACATGCTCATCCAGAATTTGTACATATTTCACAACACCAGGCC
GATGTTGCTGATGGAGGCGGCGGAGACACGATGGCATGACGTGCTGGCCG
ATATATTTCGTTCGGTGCCTCCCTCTCTGTGGCGACTGGCAAGTCGCCCG
GGATCGCTACTGCCCCTGAAGGAGCCGTCGCGATCGCCGGGCTGCGCATT
CGTGGAAGTGGACGGGGCAGACGGAGCTCTGTCGCAGGCGATGCTTACCC
TCGTGTTCAGGATCGTGCGGTGTGGCGATGTTCCAGGATCCCTTCTTGCG
CCGGGCGTCGTGTGCCCTGGTGGCTTTTGCGAAAACAGCGAGGGGAACAC
GGACGCAGGGGGGGAAATGCGCCCGGAGGAAAGGCCACAGGCCACGCGGC
CATGGAGCACGGCGGAAGAAGCTCTGGCGGCTACGGCTTTTGCGAGTGCC
GATGGCGATGATGGTGATGGGGACGGGGTGGGGTTCGCCGGGCGGCTGGT
GCGGCTTTTTTCCGACCAGGATGACGCCCTGGTGGACATGCTCATCCAGA
ATTTGTACATATTTCACAACACCAGGCCGATGGGGGGCGAGCAGGAAACC
ATCCACGAGCGCAGCACCAGTTCCTCACCTGGGCTGAGGAACCTGTACGA
CAGTATTTTGCACCCAGGAACCTTGTTCGCGGCGCTGCTGTCAGAGGGGG
GCGAGCAGGAAACCATCCACGAGCGCAGCACCAGTTCCTCACCTGGGCTG
AGGAACCTGTACGACAGTATTTTGCACCCAGGAACCTTGTTCGCGGCGCT
GCTGTCAGAGGTGCGGTTCGATTCGGGTGTGCTGCTGGACTGGTTGATAT
CGCCGGAAACGAAGTTTCTGCAGTACCTCACCATGCTGCTGCGCTTGGCC
GTCGCCGAATGGTCCGATTTCGCCGTTAGCGTGTCTTGCACAAGATCTAG
CGTATTTGAAAGTGTGTGTGGTGTGAGTGCAGCCGTCCGAGCAATAGAAC
GAGAGAAAATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGGTTCTG
TCCGAGGAAGAAGCAGGCCGGCTGGGTAAGGTGGTGTCATGCCTGAGCGG
GCTGGTTGCGAGCGCGCGGGGCCTGGAAAATAATGGACTCGTGCCTTACA
GTCTCGCGCCTCTGCTTCGGCGGATCGATCAAGTGGTGTCGCTATATGAG
GACTGCGGCGATGCCGACGAAGTGGAGGACGATGATCTACCTGTTGATGG
GGTGTTTGCAAAGCAGCGTCGCTAAGTGCGGTTCGATTCGGGTGTGCTGC
TGGACTGGTTGATATCGCCGGAAACGAAGTTTCTGCAGTACCTCACCATG
CTGCTGCGCTTGGCCGTCGCCGAATGGTCCGATTTCGCCGTTAGCGTGTC
TTGCACAAGATCTAGCGTATTTGAAAGTGTGTGTGGTGTGAGTGCAGCCG
TCCGAGCAATAGAACGAGAGAAAATGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGTTGGTTCTGTCCGAGGAAGAAGCAGGCCGGCTGGGTAAGGTGGT
GTCATGCCTGAGCGGGCTGGTTGCGAGCGCGCGGGGCCTGGAAAATAATG
GACTCGTGCCTTACAGTCTCGCGCCTCTGCTTCGGCGGATCGATCAAGTG
GTGTCGCTATATGAGGACTGCGGCGATGCCGACGAAGTGGAGGACGATGA
TCTACCTGTTGATGGGGTGTTTGCAAAGCAGCGTCGCTAA
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