mRNA_L-elsbetiae_contig80.16983.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig80.16983.1
Unique NamemRNA_L-elsbetiae_contig80.16983.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig80.16983.1 vs. uniprot
Match: D8LM99_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM99_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 3.740e-10
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  220 GENGFCEGSDWLLKVLSLEDMATVATPRGTRATGGGVGDAASALTHGSQVSIAGNPAFGLR 402
            GE    EGSDWLLK LSL++M   AT    ++   G  DAAS LTHGS+VS AGNPAFGLR
Sbjct:  521 GERDLFEGSDWLLKELSLQNMRISATSISKQSMSEGRKDAASVLTHGSEVSFAGNPAFGLR 581
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BLAST of mRNA_L-elsbetiae_contig80.16983.1 vs. uniprot
Match: A0A6H5JTQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 6.940e-10
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  220 GENGFCEGSDWLLKVLSLEDMATVATPRGTRATGGGVGDAASALTHGSQVSIAGNPAFGLR 402
            GE    EG+DWLLK LSL+DM   AT    ++   G  D AS LTHGS+VS AGNPAFGLR
Sbjct:  524 GERDMFEGNDWLLKELSLQDMRISATSINKQSMSEGRTDTASVLTHGSEVSFAGNPAFGLR 584
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig80.16983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM99_ECTSI3.740e-1060.66Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JTQ1_9PHAE6.940e-1059.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig80contigL-elsbetiae_contig80:17832..18872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue5.8e-09
Seed eggNOG ortholog2880.D8LM99
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size404
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig80.16983.1prot_L-elsbetiae_contig80.16983.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig80 17834..18872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816885.193159-CDS-L-elsbetiae_contig80:17833..178691622816885.193159-CDS-L-elsbetiae_contig80:17833..17869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig80 17834..17869 -
1691683886.5458422-CDS-L-elsbetiae_contig80:17833..178691691683886.5458422-CDS-L-elsbetiae_contig80:17833..17869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig80 17834..17869 -
1622816885.2039545-CDS-L-elsbetiae_contig80:18253..183581622816885.2039545-CDS-L-elsbetiae_contig80:18253..18358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig80 18254..18358 -
1691683886.562245-CDS-L-elsbetiae_contig80:18253..183581691683886.562245-CDS-L-elsbetiae_contig80:18253..18358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig80 18254..18358 -
1622816885.2142632-CDS-L-elsbetiae_contig80:18611..188721622816885.2142632-CDS-L-elsbetiae_contig80:18611..18872Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig80 18612..18872 -
1691683886.5747736-CDS-L-elsbetiae_contig80:18611..188721691683886.5747736-CDS-L-elsbetiae_contig80:18611..18872Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig80 18612..18872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig80.16983.1

>prot_L-elsbetiae_contig80.16983.1 ID=prot_L-elsbetiae_contig80.16983.1|Name=mRNA_L-elsbetiae_contig80.16983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
ANGHGCGATWTSAKGDATGSSTAGGGRSSGNRPLPHQRDVGEGESATAQS
SAGQARGRAEVGRSHGARGRNTLGENGFCEGSDWLLKVLSLEDMATVATP
RGTRATGGGVGDAASALTHGSQVSIAGNPAFGLR
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mRNA from alignment at L-elsbetiae_contig80:17832..18872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig80.16983.1 ID=mRNA_L-elsbetiae_contig80.16983.1|Name=mRNA_L-elsbetiae_contig80.16983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1041bp|location=Sequence derived from alignment at L-elsbetiae_contig80:17832..18872- (Laminarionema elsbetiae ELsaHSoW15)
GCGAACGGTCACGGTTGCGGTGCTACCTGGACTTCTGCTAAAGGAGACGC
CACGGGTAGCAGCACCGCAGGCGGGGGAAGGAGCAGCGGGAACCGACCAC
TGCCGCACCAAAGAGATGTTGGCGAGGGCGAGAGTGCTACGGCTCAGTCT
TCGGCCGGACAAGCTCGTGGTCGGGCGGAGGTGGGACGAAGCCACGGCGC
TAGAGGCAGGAACACTTTGGGAGAAAACGGTTTCTGTGAAGGAAGCGACT
GGCTATTAAAGGTAAATTCCCCGGGAAACAATGAGATTCCGTAAACGGAC
GTGCCTAGAAGCGAGTCCTGTATCTTCACTAACAGCTGGCAAGTCCTGCT
GGGGTGGTGGTGGCTCCAACACAAGATGGACGCGGACGCGACGTGGTAGA
CATGGTAGTAGGCGCCATTTGCGATGCCTGCCCCCGTTACGATGTAATGT
AGTGTGCCCGATAAAAAAACGTGTTTCATTCCTCTTGTATTGACCGTTTT
ACTGTTGGGTCAAGGTGCTGAGCCTCGAAGATATGGCCACAGTCGCGACG
CCGCGCGGTACGCGCGCAACCGGTGGCGGGGTAGGTGACGCGGCATCGGC
TCTCACACACGGCTCGCAGGTGGGGACAACTTGTTGTCTGGGCCTTTTTG
GGCGCTCTAGAGCTGGTTGTGCGTGCACACTATAGTCTACGAGCTTATCT
CCTGTGGCTCGGGGATACGGTCTCCTGGAAATATCAGGAGGCCCGATGAA
GGCATCTCCGGAGAAGTGCGAACGCCACCTGACGGTCGAAGTTTATCCTG
CCGGCCGAGCACCCGTGCAACTTCATATCGTCGGTTCATTGTCCCGGATC
ATCTGACCGCTAGCACGGTGGTGCTGGTTGCGCACACCCCTTCCTTTCGC
TTTCATGGCGAACTAACTGGCTGCGTGCCCCAAGGCCTGAGAGAAGAGCA
TCGCGTGCGCCCTGTTTTCTCTGTTTTGTTTTCGTGCTCCCGGCCCCTTA
CAGGTGTCCATCGCCGGAAACCCCGCGTTCGGGCTACGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig80:17832..18872-

>mRNA_L-elsbetiae_contig80.16983.1 ID=mRNA_L-elsbetiae_contig80.16983.1|Name=mRNA_L-elsbetiae_contig80.16983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig80:17832..18872- (Laminarionema elsbetiae ELsaHSoW15)
GCGAACGGTCACGGTTGCGGTGCTACCTGGACTTCTGCTAAAGGAGACGC
CACGGGTAGCAGCACCGCAGGCGGGGGAAGGAGCAGCGGGAACCGACCAC
TGCCGCACCAAAGAGATGTTGGCGAGGGCGAGAGTGCTACGGCTCAGTCT
TCGGCCGGACAAGCTCGTGGTCGGGCGGAGGTGGGACGAAGCCACGGCGC
TAGAGGCAGGAACACTTTGGGAGAAAACGGTTTCTGTGAAGGAAGCGACT
GGCTATTAAAGGCGAACGGTCACGGTTGCGGTGCTACCTGGACTTCTGCT
AAAGGAGACGCCACGGGTAGCAGCACCGCAGGCGGGGGAAGGAGCAGCGG
GAACCGACCACTGCCGCACCAAAGAGATGTTGGCGAGGGCGAGAGTGCTA
CGGCTCAGTCTTCGGCCGGACAAGCTCGTGGTCGGGCGGAGGTGGGACGA
AGCCACGGCGCTAGAGGCAGGAACACTTTGGGAGAAAACGGTTTCTGTGA
AGGAAGCGACTGGCTATTAAAGGTGCTGAGCCTCGAAGATATGGCCACAG
TCGCGACGCCGCGCGGTACGCGCGCAACCGGTGGCGGGGTAGGTGACGCG
GCATCGGCTCTCACACACGGCTCGCAGGTGCTGAGCCTCGAAGATATGGC
CACAGTCGCGACGCCGCGCGGTACGCGCGCAACCGGTGGCGGGGTAGGTG
ACGCGGCATCGGCTCTCACACACGGCTCGCAGGTGTCCATCGCCGGAAAC
CCCGCGTTCGGGCTACGCGTGTCCATCGCCGGAAACCCCGCGTTCGGGCT
ACGC
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