mRNA_L-elsbetiae_contig7999.16971.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7999.16971.1 vs. uniprot
Match: D7FXL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL9_ECTSI) HSP 1 Score: 160 bits (404), Expect = 7.310e-42 Identity = 101/165 (61.21%), Postives = 118/165 (71.52%), Query Frame = 1 Query: 889 VEPIPGPLPSAEKSEETLRLPASVLTVLLGQGKPRSGGGVGRALSSKDVTKWLILKDIQKHTGTTATLISLPRTGS--GGSGEGAAVTVNAAAGRPEESDGR---QAAPAGNGD-DSAEALVLLIRGPANCVEVAAEALRKLGRMETVRETLSFVKTTSPHRRLT 1365 V PIPGPLPSAE+SEE +RLPASV+ VL GQ K +SG G+ V +WLILKDIQKHTGTTAT IS+PR G+ G +G G A NA+A + E +A P D D+ E LVLL++GP NCVEVAAEALRKLGR ETVR+ L+FVKTTSPHRRLT Sbjct: 2 VVPIPGPLPSAERSEEIVRLPASVIPVLKGQAKSKSGNGLV-------VARWLILKDIQKHTGTTATAISVPRAGADEGRAGTGKA---NASATKMTEDAAESTAEATPTAVADGDADEDLVLLVKGPTNCVEVAAEALRKLGRKETVRDALTFVKTTSPHRRLT 156
BLAST of mRNA_L-elsbetiae_contig7999.16971.1 vs. uniprot
Match: A0A6H5L596_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L596_9PHAE) HSP 1 Score: 143 bits (360), Expect = 9.280e-32 Identity = 239/464 (51.51%), Postives = 264/464 (56.90%), Query Frame = 1 Query: 1 EVDTAAVAEFPLHVCRHPLVVGARGATLKRISAEAAVRIAVPSEREAXXXXXXXXXXXXXXXXXXXXLLDKNLVIQLEGEVGALFYSLAMIIEAVYGF--RVAGAH-PXXXXXXXXXXXXXXXXXXXXDGTDVTVVV--QAPYSASPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAPQINARRPASLAASXXXXXXXXXXXXXXXXXXXXXXGVEPIPGPLPSAEKSEETLRLPASVLTVLLGQGKPRSGGGVGRALSSKDVTKWLILKDIQKHTGTTATLISLPRTGS----GGSGEGAAVTVNAAAGRPEESDGRQAAPAGNGDDSAEALVLLIRGPANCVEVAAEALRKLGRMETVRETLSFVKTTSPHRRLT 1365 +VDTAAVAEFPLH+ RHP++VG +GATLKRISA AVRI VPSE+EAXXXXXXXXXXXXXXXXXX L DKNLV+Q+ GE M+ EA G V +H P XXXXXXXXXXXXXXXXXX TV Q P PG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX N + P + XXXXX V PIPGPLPS E+SEET+RLPASV+ VL GQ K + G G+ V +WLILKDIQKHTGT AT IS+PR G+ GG+ E LVLL++GP NCVEVAAEALRKLGR ETVR+ L+FVK TSPHRRLT Sbjct: 92 QVDTAAVAEFPLHLSRHPIIVGPKGATLKRISAANAVRITVPSEKEAXXXXXXXXXXXXXXXXXXS-LRDKNLVVQVRGEG----MRHTMVTEAQRGVPQAVGWSHAPAAXXXXXXXXXXXXXXXXXXXXXXXTVANKRQQPAKQEPGQGHSRPPPTEIGTPSPAQQGTGARGKRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------NTQWPTPPRQAGEAMPEESPKQQXXXXXQGQM--VIPIPGPLPSTERSEETVRLPASVIPVLKGQAKSKPGNGLV-------VARWLILKDIQKHTGTRATAISVPRAGADGGRGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLVLLVKGPTNCVEVAAEALRKLGRKETVRDALTFVKKTSPHRRLT 500 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7999.16971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7999.16971.1 >prot_L-elsbetiae_contig7999.16971.1 ID=prot_L-elsbetiae_contig7999.16971.1|Name=mRNA_L-elsbetiae_contig7999.16971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=712bp EVDTAAVAEFPLHVCRHPLVVGARGATLKRISAEAAVRIAVPSEREAAAQback to top mRNA from alignment at L-elsbetiae_contig7999:2422..9085- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7999.16971.1 ID=mRNA_L-elsbetiae_contig7999.16971.1|Name=mRNA_L-elsbetiae_contig7999.16971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6664bp|location=Sequence derived from alignment at L-elsbetiae_contig7999:2422..9085- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7999:2422..9085- >mRNA_L-elsbetiae_contig7999.16971.1 ID=mRNA_L-elsbetiae_contig7999.16971.1|Name=mRNA_L-elsbetiae_contig7999.16971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4272bp|location=Sequence derived from alignment at L-elsbetiae_contig7999:2422..9085- (Laminarionema elsbetiae ELsaHSoW15)back to top |