mRNA_L-elsbetiae_contig7995.16968.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7995.16968.1
Unique NamemRNA_L-elsbetiae_contig7995.16968.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7995.16968.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.500e-6
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:    1 PAAATFFNAVQLLRDCMFNGSALPDHVV 84
            PAA +FF+A+QLLRDCMFNGS LPDH+V
Sbjct: 2284 PAAGSFFSALQLLRDCMFNGSTLPDHIV 2311
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BLAST of mRNA_L-elsbetiae_contig7995.16968.1 vs. uniprot
Match: A0A6H5K6P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P6_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 4.590e-5
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:    1 PAAATFFNAVQLLRDCMFNGSALPDHVV 84
            PAA +FF+A+QLLRD MF+GSALPDH+V
Sbjct:  152 PAAGSFFSALQLLRDSMFDGSALPDHIV 179
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7995.16968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIB1_9PHAE1.500e-678.57ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K6P6_9PHAE4.590e-575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7995contigL-elsbetiae_contig7995:8031..8354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816883.4175062-CDS-L-elsbetiae_contig7995:8030..81141622816883.4175062-CDS-L-elsbetiae_contig7995:8030..8114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7995 8031..8114 +
1691683885.1874251-CDS-L-elsbetiae_contig7995:8030..81141691683885.1874251-CDS-L-elsbetiae_contig7995:8030..8114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7995 8031..8114 +
1622816883.4309866-CDS-L-elsbetiae_contig7995:8270..83541622816883.4309866-CDS-L-elsbetiae_contig7995:8270..8354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7995 8271..8354 +
1691683885.1970227-CDS-L-elsbetiae_contig7995:8270..83541691683885.1970227-CDS-L-elsbetiae_contig7995:8270..8354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7995 8271..8354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7995.16968.1prot_L-elsbetiae_contig7995.16968.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7995 8031..8354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7995.16968.1

>prot_L-elsbetiae_contig7995.16968.1 ID=prot_L-elsbetiae_contig7995.16968.1|Name=mRNA_L-elsbetiae_contig7995.16968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
PAAATFFNAVQLLRDCMFNGSALPDHVVSAARQARQQVLAPASLPGTGSA
MGDPAC
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mRNA from alignment at L-elsbetiae_contig7995:8031..8354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7995.16968.1 ID=mRNA_L-elsbetiae_contig7995.16968.1|Name=mRNA_L-elsbetiae_contig7995.16968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig7995:8031..8354+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCTGCAGCCACTTTTTTCAACGCCGTGCAGCTCTTGAGGGACTGCAT
GTTCAACGGCTCCGCATTACCCGACCATGTCGTTGTAAGTTTACCTTTTT
CTTGTCCGTCTCATATTTTTGGTAATGTCTTCGGGTTTTTATTGAAGCCG
TTCTCACAATATCATTTACCTCCTCGACCATTTCCCTTTTACCTTCCTTC
CTTCCTCGCCTTCATCCTCCGTTCTCACGCCCTTATACAGTCTGCTGCTC
GTCAGGCGCGACAACAGGTCTTGGCCCCCGCGTCTCTACCCGGCACCGGT
TCCGCCATGGGGGATCCCGCGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7995:8031..8354+

>mRNA_L-elsbetiae_contig7995.16968.1 ID=mRNA_L-elsbetiae_contig7995.16968.1|Name=mRNA_L-elsbetiae_contig7995.16968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig7995:8031..8354+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCTGCAGCCACTTTTTTCAACGCCGTGCAGCTCTTGAGGGACTGCAT
GTTCAACGGCTCCGCATTACCCGACCATGTCGTTCCGGCTGCAGCCACTT
TTTTCAACGCCGTGCAGCTCTTGAGGGACTGCATGTTCAACGGCTCCGCA
TTACCCGACCATGTCGTTTCTGCTGCTCGTCAGGCGCGACAACAGGTCTT
GGCCCCCGCGTCTCTACCCGGCACCGGTTCCGCCATGGGGGATCCCGCGT
GCTCTGCTGCTCGTCAGGCGCGACAACAGGTCTTGGCCCCCGCGTCTCTA
CCCGGCACCGGTTCCGCCATGGGGGATCCCGCGTGC
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