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Homology
BLAST of mRNA_L-elsbetiae_contig7994.16963.1 vs. uniprot
Match: A0A6H5K4V2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4V2_9PHAE) HSP 1 Score: 275 bits (702), Expect = 4.530e-86 Identity = 168/276 (60.87%), Postives = 203/276 (73.55%), Query Frame = 1
Query: 1 LQNFRISIEHGAASLLNYLSSVQVRGDTKLCLGIGVLAGLAIVVAIAAYPGEPIDYTGAGIDLPAGMRGEETLNVVDAAGKSKKHDRAQPAATAGDKQEAAGLRQIEGVVHNLSELRKRSRKAAKDPDVPSPAPAVGEETLARNSSTES-----GGMKAEG---DWDASRLDEDKLARKIGSSKAARMLGLTEDQVRQAVVEAKEELRQSHSA-SGGSIERDSSDDGIRLSGLLSLAMILAGLGALWAYLSAYPHGTLSRFLIGIFPREMETLGLA 801
++N IE GA L +Y+SS+QVR DTK L +G+L GL++VVAIA+YPG+PIDYTG GIDLP MRGEET+ V KK D+A D+Q+ AGL+QI+GVV NLS+LR+R R + PS A A GEE+L N++TES G + E +WDA RLDEDKLARKIGSSKAARMLGLTEDQVRQAV +AK+EL QS S +GGS RDS+DDG+ SG LSLAM+L G+ ALWA+LSAYPHGTL RFL+G+FPREMETLGLA
Sbjct: 1 MENILSKIEDGATVLQSYVSSLQVRTDTKFSLLLGILLGLSVVVAIASYPGKPIDYTGVGIDLPPEMRGEETVGVA------KKLDQAGSVGAV-DEQKPAGLQQIQGVVDNLSQLRRRKRAK----NTPSSA-AAGEESLV-NTTTESQIKETGNAEDEAGRAEWDARRLDEDKLARKIGSSKAARMLGLTEDQVRQAVADAKQELEQSSSGPAGGSPARDSNDDGVGFSGFLSLAMLLVGMWALWAHLSAYPHGTLCRFLVGVFPREMETLGLA 263
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-10_005550.1 |
| Exons | 5 |
| Model size | 1500 |
| Cds size | 615 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816882.9745686-UTR-L-elsbetiae_contig7994:225..912 | 1622816882.9745686-UTR-L-elsbetiae_contig7994:225..912 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7994 226..912 - |
| 1691683884.9118047-UTR-L-elsbetiae_contig7994:225..912 | 1691683884.9118047-UTR-L-elsbetiae_contig7994:225..912 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7994 226..912 - |
| 1622816883.040387-UTR-L-elsbetiae_contig7994:2665..2685 | 1622816883.040387-UTR-L-elsbetiae_contig7994:2665..2685 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7994 2666..2685 - |
| 1691683884.96892-UTR-L-elsbetiae_contig7994:2665..2685 | 1691683884.96892-UTR-L-elsbetiae_contig7994:2665..2685 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7994 2666..2685 - |
| 1622816883.0538476-UTR-L-elsbetiae_contig7994:3566..3744 | 1622816883.0538476-UTR-L-elsbetiae_contig7994:3566..3744 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7994 3567..3744 - |
| 1691683884.9788067-UTR-L-elsbetiae_contig7994:3566..3744 | 1691683884.9788067-UTR-L-elsbetiae_contig7994:3566..3744 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7994 3567..3744 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816882.9867315-CDS-L-elsbetiae_contig7994:912..1044 | 1622816882.9867315-CDS-L-elsbetiae_contig7994:912..1044 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7994 913..1044 - |
| 1691683884.9251208-CDS-L-elsbetiae_contig7994:912..1044 | 1691683884.9251208-CDS-L-elsbetiae_contig7994:912..1044 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7994 913..1044 - |
| 1622816883.000559-CDS-L-elsbetiae_contig7994:1323..1443 | 1622816883.000559-CDS-L-elsbetiae_contig7994:1323..1443 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7994 1324..1443 - |
| 1691683884.9345114-CDS-L-elsbetiae_contig7994:1323..1443 | 1691683884.9345114-CDS-L-elsbetiae_contig7994:1323..1443 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7994 1324..1443 - |
| 1622816883.0118964-CDS-L-elsbetiae_contig7994:1872..1967 | 1622816883.0118964-CDS-L-elsbetiae_contig7994:1872..1967 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7994 1873..1967 - |
| 1691683884.9473617-CDS-L-elsbetiae_contig7994:1872..1967 | 1691683884.9473617-CDS-L-elsbetiae_contig7994:1872..1967 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7994 1873..1967 - |
| 1622816883.027464-CDS-L-elsbetiae_contig7994:2397..2665 | 1622816883.027464-CDS-L-elsbetiae_contig7994:2397..2665 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7994 2398..2665 - |
| 1691683884.9574158-CDS-L-elsbetiae_contig7994:2397..2665 | 1691683884.9574158-CDS-L-elsbetiae_contig7994:2397..2665 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7994 2398..2665 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7994.16963.1 >prot_L-elsbetiae_contig7994.16963.1 ID=prot_L-elsbetiae_contig7994.16963.1|Name=mRNA_L-elsbetiae_contig7994.16963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
MRGEETLNVVDAAGKSKKHDRAQPAATAGDKQEAAGLRQIEGVVHNLSEL
RKRSRKAAKDPDVPSPAPAVGEETLARNSSTESGGMKAEGDWDASRLDED
KLARKIGSSKAARMLGLTEDQVRQAVVEAKEELRQSHSASGGSIERDSSD
DGIRLSGLLSLAMILAGLGALWAYLSAYPHGTLSRFLIGIFPREMETLGL
ASYS* back to topmRNA from alignment at L-elsbetiae_contig7994:226..3744- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig7994.16963.1 ID=mRNA_L-elsbetiae_contig7994.16963.1|Name=mRNA_L-elsbetiae_contig7994.16963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3519bp|location=Sequence derived from alignment at L-elsbetiae_contig7994:226..3744- (Laminarionema elsbetiae ELsaHSoW15)
TTGCAGAACTTCCGGATCAGCATTGAGCATGGAGCTGCGTCGCTTCTAAA
CTACCTTTCCTCGGTCCAAGTACGCGGAGATACCAAACTCTGCCTCGGGA
TCGGAGTGTTGGCGGGCTTGGCCATCGTTGTCGCCATAGCCGCATACCCC
GGTGAACCCATCGACTACACCGGAGCCGGTGAGGCCCAGAGTCTGGCGAA
TATTTAAGTGTCTAACACACCATCCATATGCAGGTTACTAGATCGCTTTT
TATACAGATCTTGTCCGTAGGTATATGTACTACCAAGGTTTTCAAATTGA
AATTGCTAAATTGAAATCAGCGAATCAAAATGGAGAATATATTGGCCATC
GTTGCCGCCATATGTAGCCGCAACCCCCCCGGTAAACCCATCGACTACAC
CGGGGCCGTTGAGGCCCAGAGCCTGGCGAATCTTTGAGTGTCCAGCACAC
TACATGTGTAGGTTTAAATGGGCGCCCGGGAATCTGGGAACGCCCTTCCC
TAAGCTGTTTACCCGGTTACAGCGACCTAGACCCTAACCAATGCGCACCA
ACCTAGCTTGGGGGTTGGGTTTGGGCTGGGTTAGGCCTAACCGCTGTGAA
CTATGAACTGGGCTGACGGCTGGAAACCCGCGGTGCATTTCTCTGCGTGC
CTACCTCCAAGAACAAATTGTTGTACCGTCTTGAGGGCAGGCGTTTTCCC
ATTTGCCCTCGAGTGCAGATTCCCCCATCTGCCCTTGAGTGCAGATTCCC
GAGCGCCGAGTTTAATTATAAATCAGTGAATCAAATAAAGAACCAGGATA
CCCAACGGTTTGTACAGGACTTTTCCCACACTCATTTCACCTCGACCTAG
CTTATACCACAAGACTGCTCCTGGCGGCCAGGCAGCAACCACCTCCGGAG
CGGGTCCGGTGGCCCGGCTGAACATCCACGGCGCCAACACTCCCCACGAT
TTGCAGAAATATAAATACTCCGCAAGCAAGCCACTCGAGTGGGAGTGTGC
TTTTCACAGCCTGAAAAGTACTGCCCCAACCCGCCCGTTCGCTACGTGTT
CGTCTTCAGGCATCGATCTGCCAGCAGGTATGCGAGGGGAGGAAACGCTG
AACGTTGTCGACGCAGCAGGAAAGTCGAAGAAGCACGACCGGGCACAGCC
TGCCGCGACAGCGGGAGACAAGCAGGAGGCAGCCGGGTTGCGGCAGATCG
AGGGAGTGGTACACAACCTGTCAGAGCTGAGGAAAAGATCAAGAAAGGCA
GCGAAGGATCCTGATGTGCCGTCTCCAGCACCAGCGGTCGGAGAAGAAAC
CCTCGCCCGCAATAGCAGCACAGAGAGCGGCGGGATGAAGGCCGAAGGTG
CGCGGTGAACGTGTGTATCGCGCGACAAGCCCACAGACCAATCCTTGTGA
TACAAACAGTAGTTCCACTATTGTCGCATCGAGACACATAGTGGTGGTGC
AGGGAAGGAAGCCCTTGGGTGTGTTTGTGTGTATTTACGTCTATGTACGA
CATCTCCGTCAGGCGAACGGCGCTTGGTCTTCATTCGACCTCATTCGAGC
TCTGCTGCGTGCTGATAGCATTAAACCCATAGGGGTGTGTGCGGAAATGG
AGATCAAGGTGGCCTGGTATCTACTACTGTATGGCAGATGTGCGATTCTC
GCTTGTATTGTCTGTGAACACGCTGGAGGCGTAACAAGCTAGAGAGCTTC
AAGGTAAAACTCGTGGGAGAAATCGGTCACGCCTCATACACACGCCAAAC
CTTGCCTCGCGTATGTACGTATTCAAGGGGATTGGGACGCGAGCCGATTG
GATGAAGACAAGCTGGCGCGAAAGATTGGCTCGAGCAAGGCGGCCAGGAT
GCTGGGACTGACGGAGGACCAGGTGCGACACGTGGCCATCTTGTGCACTC
CCACTCCGGCGAACCCCATTCACCTGTCGGATTCGTGTCGATCGACAAGG
GACTGGTTCTGATTGCCGAGTTATTGTTTTTGGGTTGCTGTGTAGGATCA
TGAGCCCTTTACTGCTTTATTGTGGTTGTGATGGGTTGATATTTTGTGTC
GTATAACAAAGAGCGTATCAGGCAGGAGCACTGGTTATAAAACTCTGGTT
CTGACCGTTTCCCCCGAGTACCAACGATGTTACAACCGCTTCCTATCCAC
GTATGGTACATAGAAGTATCCCGACTGGGCCCCGCAAGCGGTGGTCGTCT
TGTTCTTTTTCTTCACAAAATAAAATATTCCTACCGAAGCCGCTTATACC
AGATAGCGCGTTCTTGACCTTTCTTACTTTTCCGACGAATGTCTGGCGAA
GGTTCGCCAAGCCGTTGTGGAGGCGAAAGAGGAGCTTCGGCAGTCGCATT
CGGCATCGGGAGGGTCAATTGAACGAGACAGTAGCGATGACGGCATACGG
CTTTCCGGACTCCTTTCGCTGGTGAGGAAGCTTTCGCGACTACGAATGAT
TCGTGGCGTATTTTTGTTGTGATCTCTTTGTTCTCACGAGATGATTACTA
GCTACATGTGCACCTTAATCTTCAAGGGTGCATTGCAGTGGTGGCGTCTG
GAACTACATCCGAACATTTATCGCACAAAAGAGTAGTGGCACCATGTGCG
TAGAGTTCGGCAGCCAAGGCATGGTGGTCTTTCGAAGCGACAACTTTTTT
GGCCCGTCGTGAACTCGTCTGCACCGACATCTTCGTTTGCCACTTTTCAG
GCGATGATATTGGCGGGCTTGGGCGCGCTGTGGGCGTACCTCTCGGCGTA
TCCTCACGGAACGCTCTCGCGATTTCTCATCGGAATCTTCCCTCGAGAAA
TGGAGACCTTGGGACTGGCGTCATATAGTTGAGGGATTGGCCGCGATAGT
CAGGGACTGCGATGAGCTCAAGCTTACTAGCTTGCAGGAGGAGAGCCGGG
GCTTTCGTGCGTGTATGCATTCGTTGGTTTAACGCTTGCGTATGACGTGC
GCAGCATATGTATCTGGCGCCGCTTACGGAAGGTTCAAGCAAAGCATTTT
GACCCTGCCGGAATATTTTGGCTCTTGGTGTCACGTGGCGAAACAGTTCA
AAGTGCAGCGGTTTCAAGAGCAGGCCCAACTGATGTAAACGTTTATGTGC
TGTGTGAATCGCCCGGGGGTTAGCCTCGGTCTCTTCTACATCCTATATCC
TGCCCCCTCTCCCGTGCCTGACGGAGAGGGCAGGAAATAGGATGAAGGCT
TGTGTCATTATATAGGTAGACATTTTTTTGCAGTGTGTTGTTGTATTGTA
GTGTCTCGGACGCCGTAGCATACGATACCTACGTGTGATCACTGTGAACG
AACAGTCTCAGGCTCTACGATACATGGGTCGTCAGACGTCCTGGCTCTCT
GGCAAATTTCTTGCACAGCGTCTGCCCACGTTCGCTGCCTGCATAAGGTT
GAAACCAGGGTCCTCCCCACAGACGGCTTCTTCCAAACTTCAAGAGGTCG
ATGCCACTCGTGCCTTGTTCAAGTCTGTTCGAAGTAGCAGATTATAGATG
GCGGGGGAGCTACGACCCG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig7994:226..3744- >mRNA_L-elsbetiae_contig7994.16963.1 ID=mRNA_L-elsbetiae_contig7994.16963.1|Name=mRNA_L-elsbetiae_contig7994.16963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig7994:226..3744- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAGGGGAGGAAACGCTGAACGTTGTCGACGCAGCAGGAAAGTCGAA
GAAGCACGACCGGGCACAGCCTGCCGCGACAGCGGGAGACAAGCAGGAGG
CAGCCGGGTTGCGGCAGATCGAGGGAGTGGTACACAACCTGTCAGAGCTG
AGGAAAAGATCAAGAAAGGCAGCGAAGGATCCTGATGTGCCGTCTCCAGC
ACCAGCGGTCGGAGAAGAAACCCTCGCCCGCAATAGCAGCACAGAGAGCG
GCGGGATGAAGGCCGAAGATGCGAGGGGAGGAAACGCTGAACGTTGTCGA
CGCAGCAGGAAAGTCGAAGAAGCACGACCGGGCACAGCCTGCCGCGACAG
CGGGAGACAAGCAGGAGGCAGCCGGGTTGCGGCAGATCGAGGGAGTGGTA
CACAACCTGTCAGAGCTGAGGAAAAGATCAAGAAAGGCAGCGAAGGATCC
TGATGTGCCGTCTCCAGCACCAGCGGTCGGAGAAGAAACCCTCGCCCGCA
ATAGCAGCACAGAGAGCGGCGGGATGAAGGCCGAAGGGGATTGGGACGCG
AGCCGATTGGATGAAGACAAGCTGGCGCGAAAGATTGGCTCGAGCAAGGC
GGCCAGGATGCTGGGACTGACGGAGGACCAGGGGATTGGGACGCGAGCCG
ATTGGATGAAGACAAGCTGGCGCGAAAGATTGGCTCGAGCAAGGCGGCCA
GGATGCTGGGACTGACGGAGGACCAGGTTCGCCAAGCCGTTGTGGAGGCG
AAAGAGGAGCTTCGGCAGTCGCATTCGGCATCGGGAGGGTCAATTGAACG
AGACAGTAGCGATGACGGCATACGGCTTTCCGGACTCCTTTCGCTGGTTC
GCCAAGCCGTTGTGGAGGCGAAAGAGGAGCTTCGGCAGTCGCATTCGGCA
TCGGGAGGGTCAATTGAACGAGACAGTAGCGATGACGGCATACGGCTTTC
CGGACTCCTTTCGCTGGCGATGATATTGGCGGGCTTGGGCGCGCTGTGGG
CGTACCTCTCGGCGTATCCTCACGGAACGCTCTCGCGATTTCTCATCGGA
ATCTTCCCTCGAGAAATGGAGACCTTGGGACTGGCGTCATATAGTTGAGC
GATGATATTGGCGGGCTTGGGCGCGCTGTGGGCGTACCTCTCGGCGTATC
CTCACGGAACGCTCTCGCGATTTCTCATCGGAATCTTCCCTCGAGAAATG
GAGACCTTGGGACTGGCGTCATATAGTTGA back to top
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