mRNA_L-elsbetiae_contig7984.16956.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7984.16956.1
Unique NamemRNA_L-elsbetiae_contig7984.16956.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7984.16956.1 vs. uniprot
Match: A0A6H5K3A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A2_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.460e-27
Identity = 69/122 (56.56%), Postives = 76/122 (62.30%), Query Frame = 1 
Query:    4 AAASNGPLYNYACLLAAAAAAYATARTAACYAAAILPPSIKSSAVARQAALALCLPSAAALIFYAGAGYPPLGGSVAVKWVAGNWERNGERDLRWCGRLFVLLFFWQAVLAAVLAAYRTLAG 369
            AAA+N P YNY CLLAAAA            A     P       AR+AALALCL  A  L+ Y GAGYP LG +V  +WVA NWERNGERDLRWCGRLF LL  WQA+LA  + A R LAG
Sbjct:   52 AAATNAPFYNYVCLLAAAAXXXXXXXXXXXXAPVAALPKSSQGTAARRAALALCL-LAVLLVCYVGAGYPRLGDTVMARWVAANWERNGERDLRWCGRLFALLACWQALLAIAVGACRVLAG 172
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BLAST of mRNA_L-elsbetiae_contig7984.16956.1 vs. uniprot
Match: D8LHN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN3_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.640e-23
Identity = 53/74 (71.62%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:  148 AALALCLPSAAALIFYAGAGYPPLGGSVAVKWVAGNWERNGERDLRWCGRLFVLLFFWQAVLAAVLAAYRTLAG 369
            AALALCLP A  L+ Y GAGYP LG +V  +WVA NWERNGERDLRWCGRLF LL  WQAVLA  +AA R LAG
Sbjct:   97 AALALCLP-AVLLVCYVGAGYPRLGDTVMARWVAANWERNGERDLRWCGRLFALLACWQAVLAVAVAACRVLAG 169
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7984.16956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3A2_9PHAE1.460e-2756.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHN3_ECTSI3.640e-2371.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7984contigL-elsbetiae_contig7984:2328..2989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003760.1
Exons1
Model size663
Cds size627
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816882.4162683-CDS-L-elsbetiae_contig7984:2327..29541622816882.4162683-CDS-L-elsbetiae_contig7984:2327..2954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7984 2328..2954 +
1691683884.4907632-CDS-L-elsbetiae_contig7984:2327..29541691683884.4907632-CDS-L-elsbetiae_contig7984:2327..2954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7984 2328..2954 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816882.4267912-UTR-L-elsbetiae_contig7984:2954..29891622816882.4267912-UTR-L-elsbetiae_contig7984:2954..2989Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7984 2955..2989 +
1691683884.5033164-UTR-L-elsbetiae_contig7984:2954..29891691683884.5033164-UTR-L-elsbetiae_contig7984:2954..2989Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7984 2955..2989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7984.16956.1prot_L-elsbetiae_contig7984.16956.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7984 2328..2954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7984.16956.1

>prot_L-elsbetiae_contig7984.16956.1 ID=prot_L-elsbetiae_contig7984.16956.1|Name=mRNA_L-elsbetiae_contig7984.16956.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
AAAASNGPLYNYACLLAAAAAAYATARTAACYAAAILPPSIKSSAVARQA
ALALCLPSAAALIFYAGAGYPPLGGSVAVKWVAGNWERNGERDLRWCGRL
FVLLFFWQAVLAAVLAAYRTLAGSASLVVRSIRAAASGGAGSKEGGSTCG
ASGGGELEQQPRQESGKSTRDRSSSGNSSIGDGVLPAAGGGETQRKATTA
PMYLWFTT*
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mRNA from alignment at L-elsbetiae_contig7984:2328..2989+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7984.16956.1 ID=mRNA_L-elsbetiae_contig7984.16956.1|Name=mRNA_L-elsbetiae_contig7984.16956.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=662bp|location=Sequence derived from alignment at L-elsbetiae_contig7984:2328..2989+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGCCGCATCCAACGGCCCGTTGTACAACTACGCGTGTCTCCTCGC
CGCCGCCGCCGCCGCCTACGCCACCGCCCGAACGGCCGCTTGCTACGCCG
CCGCCATCCTGCCGCCGTCGATCAAATCGAGCGCCGTAGCCCGGCAAGCG
GCGCTCGCGCTGTGCCTGCCGTCGGCGGCGGCGCTCATTTTTTACGCAGG
AGCCGGGTACCCACCGCTGGGTGGTAGCGTGGCGGTGAAGTGGGTTGCCG
GGAACTGGGAGCGCAACGGCGAGAGGGACTTGAGGTGGTGCGGCCGGCTC
TTTGTGCTCCTGTTCTTCTGGCAGGCCGTGCTGGCGGCCGTGCTGGCGGC
GTACAGGACGTTGGCTGGGAGTGCCTCGCTTGTGGTCCGGTCGATTCGGG
CGGCTGCTTCGGGAGGTGCTGGTAGCAAGGAGGGGGGGTCTACCTGTGGT
GCTAGCGGCGGCGGGGAGCTGGAGCAGCAGCCCCGCCAGGAGAGTGGGAA
AAGTACCCGGGACAGGAGTAGCAGCGGGAACAGTTCTATTGGCGATGGAG
TGTTGCCGGCGGCGGGAGGCGGGGAGACGCAGAGAAAGGCGACCACAGCA
CCTATGTACCTGTGGTTCACCACGTAGTTTTTATAATTTCATGTCTTTTT
CTTCTCTTTCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7984:2328..2989+

>mRNA_L-elsbetiae_contig7984.16956.1 ID=mRNA_L-elsbetiae_contig7984.16956.1|Name=mRNA_L-elsbetiae_contig7984.16956.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig7984:2328..2989+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGCCGCATCCAACGGCCCGTTGTACAACTACGCGTGTCTCCTCGC
CGCCGCCGCCGCCGCCTACGCCACCGCCCGAACGGCCGCTTGCTACGCCG
CCGCCATCCTGCCGCCGTCGATCAAATCGAGCGCCGTAGCCCGGCAAGCG
GCGCTCGCGCTGTGCCTGCCGTCGGCGGCGGCGCTCATTTTTTACGCAGG
AGCCGGGTACCCACCGCTGGGTGGTAGCGTGGCGGTGAAGTGGGTTGCCG
GGAACTGGGAGCGCAACGGCGAGAGGGACTTGAGGTGGTGCGGCCGGCTC
TTTGTGCTCCTGTTCTTCTGGCAGGCCGTGCTGGCGGCCGTGCTGGCGGC
GTACAGGACGTTGGCTGGGAGTGCCTCGCTTGTGGTCCGGTCGATTCGGG
CGGCTGCTTCGGGAGGTGCTGGTAGCAAGGAGGGGGGGTCTACCTGTGGT
GCTAGCGGCGGCGGGGAGCTGGAGCAGCAGCCCCGCCAGGAGAGTGGGAA
AAGTACCCGGGACAGGAGTAGCAGCGGGAACAGTTCTATTGGCGATGGAG
TGTTGCCGGCGGCGGGAGGCGGGGAGACGCAGAGAAAGGCGACCACAGCA
CCTATGTACCTGTGGTTCACCACGTAGGCCGCCGCCGCATCCAACGGCCC
GTTGTACAACTACGCGTGTCTCCTCGCCGCCGCCGCCGCCGCCTACGCCA
CCGCCCGAACGGCCGCTTGCTACGCCGCCGCCATCCTGCCGCCGTCGATC
AAATCGAGCGCCGTAGCCCGGCAAGCGGCGCTCGCGCTGTGCCTGCCGTC
GGCGGCGGCGCTCATTTTTTACGCAGGAGCCGGGTACCCACCGCTGGGTG
GTAGCGTGGCGGTGAAGTGGGTTGCCGGGAACTGGGAGCGCAACGGCGAG
AGGGACTTGAGGTGGTGCGGCCGGCTCTTTGTGCTCCTGTTCTTCTGGCA
GGCCGTGCTGGCGGCCGTGCTGGCGGCGTACAGGACGTTGGCTGGGAGTG
CCTCGCTTGTGGTCCGGTCGATTCGGGCGGCTGCTTCGGGAGGTGCTGGT
AGCAAGGAGGGGGGGTCTACCTGTGGTGCTAGCGGCGGCGGGGAGCTGGA
GCAGCAGCCCCGCCAGGAGAGTGGGAAAAGTACCCGGGACAGGAGTAGCA
GCGGGAACAGTTCTATTGGCGATGGAGTGTTGCCGGCGGCGGGAGGCGGG
GAGACGCAGAGAAAGGCGACCACAGCACCTATGTACCTGTGGTTCACCAC
GTAG
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