prot_L-elsbetiae_contig7984.16956.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7984.16956.1
Unique Nameprot_L-elsbetiae_contig7984.16956.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length209
Homology
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BLAST of mRNA_L-elsbetiae_contig7984.16956.1 vs. uniprot
Match: A0A6H5K3A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A2_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.050e-27
Identity = 69/122 (56.56%), Postives = 76/122 (62.30%), Query Frame = 0 
Query:    2 AAASNGPLYNYACLLAAAAAAYATARTAACYAAAILPPSIKSSAVARQAALALCLPSAAALIFYAGAGYPPLGGSVAVKWVAGNWERNGERDLRWCGRLFVLLFFWQAVLAAVLAAYRTLAG 123
            AAA+N P YNY CLLAAAA            A     P       AR+AALALCL  A  L+ Y GAGYP LG +V  +WVA NWERNGERDLRWCGRLF LL  WQA+LA  + A R LAG
Sbjct:   52 AAATNAPFYNYVCLLAAAAXXXXXXXXXXXXAPVAALPKSSQGTAARRAALALCL-LAVLLVCYVGAGYPRLGDTVMARWVAANWERNGERDLRWCGRLFALLACWQALLAIAVGACRVLAG 172
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BLAST of mRNA_L-elsbetiae_contig7984.16956.1 vs. uniprot
Match: D8LHN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN3_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.680e-23
Identity = 53/74 (71.62%), Postives = 57/74 (77.03%), Query Frame = 0 
Query:   50 AALALCLPSAAALIFYAGAGYPPLGGSVAVKWVAGNWERNGERDLRWCGRLFVLLFFWQAVLAAVLAAYRTLAG 123
            AALALCLP A  L+ Y GAGYP LG +V  +WVA NWERNGERDLRWCGRLF LL  WQAVLA  +AA R LAG
Sbjct:   97 AALALCLP-AVLLVCYVGAGYPRLGDTVMARWVAANWERNGERDLRWCGRLFALLACWQAVLAVAVAACRVLAG 169
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7984.16956.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3A2_9PHAE1.050e-2756.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHN3_ECTSI2.680e-2371.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..49
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..68
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 100..121
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 122..208
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 69..99
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 100..122
NoneNo IPR availableTMHMMTMhelixcoord: 50..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7984contigL-elsbetiae_contig7984:2328..2954 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7984.16956.1mRNA_L-elsbetiae_contig7984.16956.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7984 2328..2989 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7984.16956.1 ID=prot_L-elsbetiae_contig7984.16956.1|Name=mRNA_L-elsbetiae_contig7984.16956.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
AAAASNGPLYNYACLLAAAAAAYATARTAACYAAAILPPSIKSSAVARQA
ALALCLPSAAALIFYAGAGYPPLGGSVAVKWVAGNWERNGERDLRWCGRL
FVLLFFWQAVLAAVLAAYRTLAGSASLVVRSIRAAASGGAGSKEGGSTCG
ASGGGELEQQPRQESGKSTRDRSSSGNSSIGDGVLPAAGGGETQRKATTA
PMYLWFTT*
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