mRNA_L-elsbetiae_contig798.16952.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig798.16952.1 vs. uniprot
Match: D8LJM7_ECTSI (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM7_ECTSI) HSP 1 Score: 504 bits (1299), Expect = 8.660e-167 Identity = 249/335 (74.33%), Postives = 279/335 (83.28%), Query Frame = 2 Query: 1151 WTDRK--LYAGCGGPVQRCRAF**MWNTTDGSTWTQVTSVNLHERRHVGALQEVDGALFVGYGMPFALTPEVSVGALRVIDLGGGSTQEIVNAATGFAHASRINCVKVVKVGADSRVYTGDEHGGITTWARPTPGGAFAQLARLEGHVRAVTSLVLTASNGMLWSSSEDGTIRIWNTATNACEHTITKDNGGHEGAVVGLAIGQSAAEGALAEYIISGSKDGTMGVFQAADGALTYKHKCGDGISAIAAFDPTPGTSALMLVGYEDGTIAVRNFPEFALAFELHPDSIYVGHSKKVHALLPFNNAAIEDSYFLSAGEEGKMICWKVHKLTDSSPA 2149 W D+ +++ C + MW+TTDGSTWTQVTSV + E RHVG LQEV+G L+VGYG P+A +V+V ALRV+DL GSTQE+V++ TGFAHASRIN + V KVGA+ RVYTGDE G IT WARP+PG FAQLA+LEGH RA+TSLV TASNGMLWSSSEDGTIRIWNT TNAC HTITKDNGGHEG V LAIGQSAAEG LAEY+ISGSKDGTMGVFQAADG LTYKHKCG G+SAIAAFDPTPGTSAL+LVGYEDGTIAVRNFPEFALAFE+HP S+YVGHSK V ALLPFNN +I+D YFLSAGE+G M+CW VHKLTD SPA Sbjct: 114 WKDKPDHVFSACDDGTVK------MWSTTDGSTWTQVTSVQMTEWRHVGDLQEVEGVLYVGYGTPYAHLADVTVDALRVMDLTSGSTQEVVSSVTGFAHASRINRIMVAKVGAEPRVYTGDEEGRITAWARPSPGAPFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACVHTITKDNGGHEGPVAALAIGQSAAEGTLAEYVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIAAFDPTPGTSALLLVGYEDGTIAVRNFPEFALAFEIHPTSLYVGHSKPVLALLPFNNPSIDDGYFLSAGEDGTMMCWNVHKLTDPSPA 442
BLAST of mRNA_L-elsbetiae_contig798.16952.1 vs. uniprot
Match: A0A835YKE1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE1_9STRA) HSP 1 Score: 154 bits (389), Expect = 5.900e-37 Identity = 111/349 (31.81%), Postives = 168/349 (48.14%), Query Frame = 2 Query: 1217 MWNTTDGSTWTQVTSVNLHERRHVGALQEVDGALFVGYGMPFALTPE------------------------------------------VSVGALRVIDLGGG---STQEIVNAATGFAHASRINCVKVVKVGADSRV-YTGDEHGGITTWARPTPGGAFAQLARLEGHVRAVTSLVLTASNGMLWSSSEDGTIRIWNTATNACEHTITKDNG-GHEGAVVGLAIGQSAAEGALAEYIISGSKDGTMGVFQAADGALTYKHKCGDGISAIAAFDPTPGTSALMLVGYEDGTIAVRNFPEFALAFELHPDSIYVGHSKKVHALLPFNNAAIEDSYFLSAGEEGKMICWKV 2122 MW T DG+ W + V+L V +L VD + Y PFAL + ++VG +R+++L GG + + +++ +AH INC+ +K A + V ++G + G I W G F LEGHVR VT L + + MLWS+S+D T+R+W+TAT AC I G GH+GAV +A G + EG EY+++GS D + ++A+ F +P + L+L+G +DG+IA+R+FP F+LAFEL + VGH V ALLP + YF+S E+GKM+ W++ Sbjct: 64 MWTTADGAVWNEAAKVDLTPHLSVTSLLVVDPFVACAYEAPFALAAQPXXXXXXXXXXXQQQRGYGGAPGALRGDDAAGALQPPRAERMITVGMIRMLNLRGGEPAAVEVVISDKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAWK--AQGTGFQLGGVLEGHVRGVTCLCMVGN--MLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMA-GPLSIEGEQGEYMVTGSADKS--------------------VTALTCFKTSP-SGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPG-PNLYFMSGAEDGKMMMWQM 385
BLAST of mRNA_L-elsbetiae_contig798.16952.1 vs. uniprot
Match: A0A6U5LIP5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5LIP5_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 7.470e-17 Identity = 100/346 (28.90%), Postives = 149/346 (43.06%), Query Frame = 2 Query: 1118 APPPVHGLFLFWTDRKLYAGCGGPVQRCRAF**MWNTTDGSTWTQVTSVNLHERRHVGALQEVDGALFVGYGMPFALTPEVSVGALRVIDLGGGST--QEIV---NAATGFAHASRINCVKVVKVGADS-RVYTGDEHGGITTWARPTPGGAFAQLARLEGHVRAVTSLVLTASNGMLWSSSEDGTIRIWNTATNACEHTITKDNGGHEGAVVGLAIGQSAAEGALAEYIISGSKDGTMGVFQAADGALTYKHKCGDGISAIAAFDPTPGTSALMLVGYEDGTIAVRNFP------EFALAFELHPDSIYVGHSKKVHALLPFNNAAIEDSYFLSAGEEGKMICWK 2119 A PPV G KL++GC R +W++ +++ + + R VGAL + LF G+ L P V VG++ +L ++ QE +A +AH + + V GA V + E G I W T G F L GH RAV+ L S G+LWS SED +IR+W+ + +C I + GH G V L S GA ++ S S DGT+ + A G + GDG+ I G + L++ G E G I VR+ P L +L D H+ + A F S+G++GK++ W+ Sbjct: 119 AVPPVPGAPP--EQIKLFSGCHDGTWR------LWDSA--ASFRKQFENEMGGR--VGALVVSNNLLFCGFEKECPLLPGVKVGSIHAWNLQNAASPPQEFHAEDSAVHPYAHGRIVTSLLPVPDGAGGVAVVSSSEDGLIRVWRFDTGTGKFMVFRSLMGHARAVSGLAY--SEGLLWSGSEDHSIRMWDMSKGSCGKVIAGGSEGHSGPVTSLLAWGSEKLGA---FVFSSSLDGTIKAWDPA-GKMLKMESHGDGVMTIVTTTDEAG-NPLLVCGLERGNIMVRSLPGAGDLPALTLLIKLS-DQYTCSHTNGPVRCV--QAGAGPAGIFYSSGDDGKLMVWQ 442
BLAST of mRNA_L-elsbetiae_contig798.16952.1 vs. uniprot
Match: A0A7S3HF87_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF87_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 8.290e-16 Identity = 67/213 (31.46%), Postives = 109/213 (51.17%), Query Frame = 2 Query: 1493 VYTGDEHGGITTWARPTPGGAFAQLARLEGHVRAVTSLVLTASNGMLWSSSEDGTIRIWNTATNACEHTITKDNGG--HEGAVVGLA-IGQSAAEGALAEYIISGSKDGTMGVFQAADGALTYKHKCGDGISAIAAFDPTPGTSALMLVGYEDGTIAVRNFPEFALAFELHPDSIYVGHSKKVHALLPFNNAAIEDSYFLSAGEEGKMICWKV 2122 V T G I TW G F Q+ LEGH+RAVT+++L + +LWS S D T+R+W+ A+ C T+ NGG H AV L + + AE +I SG+ D + ++ G+L + G ++++ AF T G ++L+G DGTI VR+ + F L + H+K + +++ S F + ++G+++ WKV Sbjct: 226 VITAGGEGLIRTWRFDASKGGFEQIMVLEGHIRAVTTVLLNGA--LLWSGSVDSTLRVWDLASGKCLATLAAANGGPGHTQAVTCLEFVPNTGAE----PFIASGAADNAVKLW-GTTGSLLHTVTHGAMVTSLKAFKDTLGGIQVLLIGLLDGTIHVRSCMSMKILFTLDAS---ICHTKAIWSIVDLGQ-----SCFGAGSDDGQIVVWKV 423
BLAST of mRNA_L-elsbetiae_contig798.16952.1 vs. uniprot
Match: A0A7R9WQC1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQC1_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 5.170e-13 Identity = 77/249 (30.92%), Postives = 106/249 (42.57%), Query Frame = 2 Query: 1433 FAHASRINCVKVVKVGADSRVYTGDEHGGITTW---ARPTPG-GAFAQLARLEGHVRAVTSLVLTASNGMLWSSSEDGTIRIWNTATNACEHTITKDNG--------------GHEGAVVGLAIGQSAAEGALAEYIISGSKDGTMGVFQAADGALTYKHKCGDGISAIAAFDPTPGTSALMLVGYEDGTIAVRNF------PEFALAFELHPDSIYVGHSKKVHALLPFNNAAIEDSYFLSAGEEGKM 2107 ++HA+R++ + V+ +V +G G I W A G G F L GH R VT L + + +LWSSS DG+IRIW+ A+ C+H IT GH+ AV L S + +I++ S DG + + + G G+G+ IA L L+G E G I VRN P F L L VGH V AL A S F S G +GK+ Sbjct: 20 YSHATRVSALNVI---GGQKVISGSRDGCIRLWTFEASSNQGKGGFVLSKTLAGHAREVTGLAV--AENVLWSSSIDGSIRIWDLASGNCQHAITNSGTNAQQSGQPPAGGGQGHKDAVTCLIPFPSPS----GTFILTSSLDGDIKAWNGSTGQCVASESHGEGVVTIAMAADQKNNQVL-LIGLESGNIMVRNLLQTPNMPAFTLIMMLSLQ-YSVGHRGPVKAL-----AQGPSSTFYSGGGDGKV 252
BLAST of mRNA_L-elsbetiae_contig798.16952.1 vs. uniprot
Match: A0A7S0CBB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CBB5_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.030e-6 Identity = 52/161 (32.30%), Postives = 71/161 (44.10%), Query Frame = 2 Query: 1433 FAHASRINCVKVVKVGADSRVYTGDEHGGITTW---------------ARPTPGGAFAQLARLEGHVRAVTSLVLTASNGMLWSSSEDGTIRIWNTATNACEHTIT------------------KDNGGHEGAVVGLAIGQSAAEGALAEYIISGSKDGTM 1816 +AHA ++ + V K D V +G + G I W A +P F L L GH R +T LVL + M+WSSS D TIR+W+ T C+H IT + GH AV L + +S EG E+I+S S DG + Sbjct: 1 YAHAMGVSSLLVTK---DMVVVSGSKDGTIRIWKFTTTNPAVATPGAVAPASPASEFLLLNTLFGHAREITGLVLI-NMSMIWSSSTDYTIRLWDANTGQCQHLITSAEEKTPPPGGNMLAPADRAKKGHTHAVTSLLVWKS--EGG--EFILSSSLDGKV 153 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig798.16952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig798.16952.1 >prot_L-elsbetiae_contig798.16952.1 ID=prot_L-elsbetiae_contig798.16952.1|Name=mRNA_L-elsbetiae_contig798.16952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=313bp MWNTTDGSTWTQVTSVNLHERRHVGALQEVDGALFVGYGMPFALTPEVSVback to top mRNA from alignment at L-elsbetiae_contig798:19931..29022+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig798.16952.1 ID=mRNA_L-elsbetiae_contig798.16952.1|Name=mRNA_L-elsbetiae_contig798.16952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9092bp|location=Sequence derived from alignment at L-elsbetiae_contig798:19931..29022+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig798:19931..29022+ >mRNA_L-elsbetiae_contig798.16952.1 ID=mRNA_L-elsbetiae_contig798.16952.1|Name=mRNA_L-elsbetiae_contig798.16952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1878bp|location=Sequence derived from alignment at L-elsbetiae_contig798:19931..29022+ (Laminarionema elsbetiae ELsaHSoW15)back to top |