mRNA_L-elsbetiae_contig7979.16949.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7979.16949.1
Unique NamemRNA_L-elsbetiae_contig7979.16949.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 7.690e-69
Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:   19 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 366
            MAKTPSKKSAKAPKKAGDKKR +KRTESYS+YIY+VLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.640e-64
Identity = 104/121 (85.95%), Postives = 116/121 (95.87%), Query Frame = 1 
Query:    4 PPLSKMAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 366
            PP S MAKTPSKKSAKAPKKAGDK +K KRTESYS+YIY+VLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   10 PPQSTMAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.080e-62
Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:   19 MAKTPSKKSAKAPKKAGD-KKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 366
            MAK PSKK+AKAPKKA D KK+K+KRTESY +YIY+VLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.760e-61
Identity = 102/118 (86.44%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:   19 MAKTPSKKSAKAPKKAGDK--KRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 366
            MAKTPSKKSAKAPKK G+K   RK KR ESYSTYIY+VLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.430e-60
Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:   19 MAKTPSKKSAKAPKKAGD-KKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 366
            MAK PSKK+AKAPKKA D KK+K+KRTESY +YIY+VLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 186 bits (472), Expect = 5.870e-59
Identity = 96/116 (82.76%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:   19 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 366
            MAKTPSKK+AKAPKKAG K+  +KR E+YS+YIY+VLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 185 bits (469), Expect = 1.790e-58
Identity = 96/116 (82.76%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:   19 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 366
            MAKTPSK+SAKAPKKA    +  KRTE+YS+YIY+VLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.220e-57
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:   19 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 366
            MAKTPSKK+A APKKAG K R  KRTESYS+YIY+VLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGK-RSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 183 bits (465), Expect = 2.390e-57
Identity = 100/123 (81.30%), Postives = 111/123 (90.24%), Query Frame = 1 
Query:    7 PLSKMAKTPSKKS-AKAPKKAGD--KKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 366
            P+S MAKTPSKK+ +KA KK  D  KKR  KR ESYSTYIY+VLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   31 PISTMAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153
[Close]
BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: K0RE94_THAOC (Histone H2B (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RE94_THAOC)

HSP 1 Score: 186 bits (473), Expect = 3.360e-57
Identity = 102/128 (79.69%), Postives = 111/128 (86.72%), Query Frame = 1 
Query:    1 DPPLSKMAKTPSKKSAKAPKKA------GDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 366
            D P+S MAKTPSKK   AP KA      GDKKR  KR ESYSTYIY+VLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:  130 DRPISTMAKTPSKK---APSKAXXXAASGDKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 254
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI7.690e-6996.55Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA1.640e-6485.95Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA2.080e-6288.03Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA1.760e-6186.44Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A836CJT3_9STRA1.430e-6088.03Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU5.870e-5982.76Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
B7FWR8_PHATC1.790e-5882.76Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA1.220e-5784.48Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A7S2P1D6_9STRA2.390e-5781.30Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]
K0RE94_THAOC3.360e-5779.69Histone H2B (Fragment) n=1 Tax=Thalassiosira ocean... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7979contigL-elsbetiae_contig7979:1236..1604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.2
Seed ortholog evalue1.3e-52
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size369
Cds size351
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.8782818-UTR-L-elsbetiae_contig7979:1235..12531622816881.8782818-UTR-L-elsbetiae_contig7979:1235..1253Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7979 1236..1253 +
1691683884.078574-UTR-L-elsbetiae_contig7979:1235..12531691683884.078574-UTR-L-elsbetiae_contig7979:1235..1253Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7979 1236..1253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.8891315-CDS-L-elsbetiae_contig7979:1253..16041622816881.8891315-CDS-L-elsbetiae_contig7979:1253..1604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7979 1254..1604 +
1691683884.0913134-CDS-L-elsbetiae_contig7979:1253..16041691683884.0913134-CDS-L-elsbetiae_contig7979:1253..1604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7979 1254..1604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7979.16949.1prot_L-elsbetiae_contig7979.16949.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7979 1254..1604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7979.16949.1

>prot_L-elsbetiae_contig7979.16949.1 ID=prot_L-elsbetiae_contig7979.16949.1|Name=mRNA_L-elsbetiae_contig7979.16949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
back to top

mRNA from alignment at L-elsbetiae_contig7979:1236..1604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7979.16949.1 ID=mRNA_L-elsbetiae_contig7979.16949.1|Name=mRNA_L-elsbetiae_contig7979.16949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=369bp|location=Sequence derived from alignment at L-elsbetiae_contig7979:1236..1604+ (Laminarionema elsbetiae ELsaHSoW15)
GACCCACCACTCAGCAAGATGGCCAAGACACCCTCCAAGAAGTCCGCAAA
GGCACCCAAGAAGGCCGGCGACAAGAAGAGGAAGAGCAAGAGGACCGAGT
CGTACTCGACCTACATCTACCGCGTGCTCAAGCAGGTGCACCCCGACACC
GGTATCTCCAAGCGCGGCATGTCCATCATGAACTCGTTCATCAACGATGT
GTTCGAGCGCGTGGCCGGCGAGTCCGGCAAGCTCACCCGCTACAACAAGA
AGGCGACCCTCTCCTCGCGCGAGGTCCAGACCGCCGTGCGCCTCATGCTC
CCCGGAGAGCTCGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCCGTCAC
CAAGTTCACCTCGTCCTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7979:1236..1604+

>mRNA_L-elsbetiae_contig7979.16949.1 ID=mRNA_L-elsbetiae_contig7979.16949.1|Name=mRNA_L-elsbetiae_contig7979.16949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig7979:1236..1604+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAAGACACCCTCCAAGAAGTCCGCAAAGGCACCCAAGAAGGCCGG
CGACAAGAAGAGGAAGAGCAAGAGGACCGAGTCGTACTCGACCTACATCT
ACCGCGTGCTCAAGCAGGTGCACCCCGACACCGGTATCTCCAAGCGCGGC
ATGTCCATCATGAACTCGTTCATCAACGATGTGTTCGAGCGCGTGGCCGG
CGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTCTCCTCGC
GCGAGGTCCAGACCGCCGTGCGCCTCATGCTCCCCGGAGAGCTCGCCAAG
CACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCGTCCTA
AATGGCCAAGACACCCTCCAAGAAGTCCGCAAAGGCACCCAAGAAGGCCG
GCGACAAGAAGAGGAAGAGCAAGAGGACCGAGTCGTACTCGACCTACATC
TACCGCGTGCTCAAGCAGGTGCACCCCGACACCGGTATCTCCAAGCGCGG
CATGTCCATCATGAACTCGTTCATCAACGATGTGTTCGAGCGCGTGGCCG
GCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTCTCCTCG
CGCGAGGTCCAGACCGCCGTGCGCCTCATGCTCCCCGGAGAGCTCGCCAA
GCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCGTCCT
AA
back to top