prot_L-elsbetiae_contig7979.16949.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig7979.16949.1
Unique Name	prot_L-elsbetiae_contig7979.16949.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	117

Homology

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BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 6.020e-69
Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKKSAKAPKKAGDKKR +KRTESYS+YIY+VLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116

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BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 197 bits (501), Expect = 3.020e-63
Identity = 101/116 (87.07%), Postives = 113/116 (97.41%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKKSAKAPKKAGDK +K KRTESYS+YIY+VLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130

[Close]

BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.630e-62
Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGD-KKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAK PSKK+AKAPKKA D KK+K+KRTESY +YIY+VLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117

[Close]

BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.380e-61
Identity = 102/118 (86.44%), Postives = 111/118 (94.07%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGDK--KRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKKSAKAPKK G+K   RK KR ESYSTYIY+VLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118

[Close]

BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.120e-60
Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGD-KKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAK PSKK+AKAPKKA D KK+K+KRTESY +YIY+VLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250

[Close]

BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 186 bits (472), Expect = 4.610e-59
Identity = 96/116 (82.76%), Postives = 110/116 (94.83%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKK+AKAPKKAG K+  +KR E+YS+YIY+VLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114

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BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 185 bits (469), Expect = 1.410e-58
Identity = 96/116 (82.76%), Postives = 107/116 (92.24%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSK+SAKAPKKA    +  KRTE+YS+YIY+VLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116

[Close]

BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 9.550e-58
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKK+A APKKAG K R  KRTESYS+YIY+VLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGK-RSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121

[Close]

BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 182 bits (461), Expect = 2.650e-57
Identity = 100/120 (83.33%), Postives = 113/120 (94.17%), Query Frame = 0

Query:    1 MAKTPSKKS-AKAPKKA--GDKKRKSK-RTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSK++ AKA KKA  GDKK++SK R ESYSTYIY+VLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120

[Close]

BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 180 bits (457), Expect = 3.100e-56
Identity = 98/119 (82.35%), Postives = 108/119 (90.76%), Query Frame = 0

Query:    1 MAKTPSKKS-AKAPKKAGD--KKRKSKRTESYSTYIYRVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKK+ +KA KK  D  KKR  KR ESYSTYIY+VLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   35 MAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig7979.16949.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI8_ECTSI	6.020e-69	96.55	Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
A0A6U0X3U9_9STRA	3.020e-63	87.07	Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R...	[more]
A0A836CJ22_9STRA	1.630e-62	88.03	Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A485K2U0_9STRA	1.380e-61	86.44	Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep...	[more]
A0A836CJT3_9STRA	1.120e-60	88.03	Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R...	[more]
H2B_OLILU	4.610e-59	82.76	Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830...	[more]
B7FWR8_PHATC	1.410e-58	82.76	Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A6U6DWX5_9STRA	9.550e-58	84.48	Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ...	[more]
B8BX20_THAPS	2.650e-57	83.33	Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A7S2P1D6_9STRA	3.100e-56	82.35	Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 100..113 score: 92.65 coord: 87..100 score: 90.61 coord: 70..87 score: 56.83 coord: 29..47 score: 80.3 coord: 48..68 score: 67.66
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 19..115 e-value: 2.1E-69 score: 246.6
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 3..116
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 84..106
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..92 e-value: 7.9E-20 score: 71.6
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 1..116 e-value: 9.7E-58 score: 195.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 4..116
None	No IPR available	PANTHER	PTHR23428:SF196	HISTONE H2B TYPE 1-N	coord: 3..116

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig7979	contig	L-elsbetiae_contig7979:1254..1604 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig7979.16949.1	mRNA_L-elsbetiae_contig7979.16949.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig7979 1236..1604 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig7979.16949.1 ID=prot_L-elsbetiae_contig7979.16949.1|Name=mRNA_L-elsbetiae_contig7979.16949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGDKKRKSKRTESYSTYIYRVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold