mRNA_L-elsbetiae_contig7975.16944.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7975.16944.1
Unique NamemRNA_L-elsbetiae_contig7975.16944.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 1.290e-97
Identity = 159/212 (75.00%), Postives = 179/212 (84.43%), Query Frame = 2 
Query:  101 MVKSLAVAAAFCASASAFMAPTPLARAPAAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPYTG 736
            M+ +LA + A  ASASAF+ P  L R  A+   GMSMQA KSKSLPFMPQP  LDG+MAGD GFDP+GFS+FIP+DFLREAELKHGRICQLAVVGFAATD+G  LPGAEHAV+SIAAHDAAVATGAMPQILLWVSAFEAIS+VAV+QMLEGSGR PG FG DP  LY++P + KKKA +EL+E+ + RLAM AFGGMVTQAVL N GFPYTG
Sbjct:    1 MMNTLACSLAVLASASAFVPPAQLPRV-ASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPYTG 211
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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A836CK85_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK85_9STRA)

HSP 1 Score: 230 bits (586), Expect = 4.900e-69
Identity = 130/214 (60.75%), Postives = 155/214 (72.43%), Query Frame = 2 
Query:  101 MVKSLAVAAAFCASASAFMAPTPLARAPAAQQG----GMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 730
            MVK+LAVA     SA+AF AP+  A A  A+       ++M A KS S+PFMP+PE LDG++ GDVGFDP+GFS+++ +DFLREAE+KHGRIC LAV G+ A D+G+HLPG  H V S+ AHD AV  GAM QILLW S FEAIS+V VVQML GSGR PGYFG DP   ++K    K K  LEL E+KNGRLAMLAF G+VTQA L N  FPY
Sbjct:    3 MVKALAVAG-LVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLN-FSKDAASKAK--LELNEIKNGRLAMLAFSGIVTQAALGND-FPY 211
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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A4D9CSZ5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSZ5_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.140e-58
Identity = 113/197 (57.36%), Postives = 142/197 (72.08%), Query Frame = 2 
Query:  140 SASAFMAPTPLARAPAAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 730
            +A+AF+   PL  A    +G +SM A KSKS+PF+P+P ALDG+ AGDVGFDPVGF+S++P+ +L+EAE+KH RI  LA +G+   D  +HLPG  HAVSS+AAHD AV +GA+ QIL+W S  EAIS +A+ QMLEGSGR PG F  DP G + K     KK  L+L E+KNGRLAMLAF G+VTQA L    FPY
Sbjct:   12 AAAAFV---PLMPATTRTRGAVSMMAEKSKSIPFLPRPPALDGTAAGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLG-FAKDEQTLKK--LQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 201
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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A7R9YG40_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG40_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.950e-58
Identity = 107/171 (62.57%), Postives = 131/171 (76.61%), Query Frame = 2 
Query:  221 KSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEG-SGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 730
            KS SLPFMP+P ALDG++ GDVGFDP+G S+ + + ++REAELKHGRIC LAVVGF ATD+G+HLPGA H V S+AAHDAAV  G M QILLWVS  E  S++AV +M+ G + R PG F LD  G Y K   ++KK  L+L+E+KNGRLAM+AFGGMVTQAVL    FP+
Sbjct:   63 KSASLPFMPRPAALDGTLVGDVGFDPLGLSNAVDVRWMREAELKHGRICMLAVVGFIATDLGIHLPGAVHNVGSVAAHDAAVKFGGMSQILLWVSVAEVWSAIAVKEMMLGETDRQPGDFKLDLLGNYAKANDQQKK-DLQLKELKNGRLAMIAFGGMVTQAVLTGKPFPF 232
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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: W7T6P5_9STRA (Light-harvesting protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6P5_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.370e-57
Identity = 112/197 (56.85%), Postives = 141/197 (71.57%), Query Frame = 2 
Query:  140 SASAFMAPTPLARAPAAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 730
            +A+AF+ P P+       +G +SM A KSKS+PF+P+P ALDG+  GDVGFDPVGF+S++P+ +L+EAE+KH RI  LA +G+   D  +HLPG  HAVSS+AAHD AV +GA+ QIL+W S  EAIS VA+ QMLEGSGR PG F  DP G + K     KK  L+L E+KNGRLAMLAF G+VTQA L    FPY
Sbjct:   81 AAAAFVPPMPVTTR---ARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLG-FAKDEQTLKK--LQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 270
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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A7R9Z1N3_9STRA (Hypothetical protein n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9Z1N3_9STRA)

HSP 1 Score: 198 bits (504), Expect = 7.660e-57
Identity = 115/220 (52.27%), Postives = 144/220 (65.45%), Query Frame = 2 
Query:   80 NYRTDRIMVKSLAVAAAFCASASAFMAPTPLARAPAAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMH---LPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 730
            ++R+  +    LAV A+   SA+AF AP    RA        S+ A KSK+LPF+P PE L G +  + GFDP  FS F+P+DFLREAELKHGRIC LA +GF A D G     LP A   ++S+ AHD  V  GAM Q+ LW+S  E +S+VAV QML GSGR PG FGLDP G + K   E++   ++L+E+KNGRLAMLAF G+VTQAVL  G FPY
Sbjct:    5 SFRSKLVCTMKLAVLASLLGSAAAF-APASTGRAVT------SLSAEKSKALPFLPYPENLKGYVGEEAGFDPFRFSDFVPMDFLREAELKHGRICMLAWLGFCAVDCGWRIYPLPEAYDGLTSVTAHDKLVEYGAMSQLFLWISLAEVVSTVAVTQMLTGSGREPGDFGLDPIG-FLKDKSEEEVTRMKLRELKNGRLAMLAFSGVVTQAVLTQGPFPY 216
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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A7S3LGC8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGC8_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.320e-56
Identity = 115/216 (53.24%), Postives = 145/216 (67.13%), Query Frame = 2 
Query:  101 MVKSLAVAAAFCASASAFMAPTPLARAPAAQQGGMSMQA---AKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHL---PGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 730
            MVKS A+ A+  ASA+AF AP P  RA        + +A     SK+LPF+  P   +G + G  GFDP  FS F+PI FL+EAE+KHGRIC +A VGFAA DMG+ +   P A   +++I AHDA V  GAM Q+LLW S  E   ++AV+QML GSGR PG FG DP G + K    +K+A ++L+E+KNGRLAMLAFGG+VTQAVL  GGFPY
Sbjct:    6 MVKS-AILASLIASAAAF-APAPTGRAATKVYEDAAAEAKPYVASKALPFLEAPPNCEG-LVGSAGFDPFRFSDFVPIQFLQEAEIKHGRICMMAFVGFAAVDMGLRVYPTPEAYEGLTAITAHDALVKEGAMGQLLLWFSIAEVFDTIAVIQMLNGSGRQPGEFGFDPLG-FLKGASPEKEADMQLKEIKNGRLAMLAFGGLVTQAVLTQGGFPY 217
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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A7S2S869_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S869_9STRA)

HSP 1 Score: 194 bits (493), Expect = 2.880e-55
Identity = 100/182 (54.95%), Postives = 131/182 (71.98%), Query Frame = 2 
Query:  185 AAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 730
            A  +G M M AAKS ++PF+P+P  LDGS+ GDVGFDP+G S ++P+D+LRE+ELKHGRIC LAV GFAATD+G  LPG +  V+S  AH+ AV+ G M  +   + A E IS +A+ + L GSGRA G +GLDP  L  KP    K A ++++E+ + RLAMLAF GMVTQAVL++ GFPY
Sbjct:   35 ATHRGAMKMMAAKSAAIPFLPKPAELDGSLIGDVGFDPLGVSDWMPLDYLRESELKHGRICMLAVTGFAATDLGFKLPGEQFNVASADAHNMAVSAGYMTVMGCAIFALECISGLAIQESLAGSGRAAGDYGLDPLKLSDKP---DKMADMQMKEITHARLAMLAFSGMVTQAVLFDKGFPY 213
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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN)

HSP 1 Score: 192 bits (488), Expect = 1.070e-54
Identity = 114/211 (54.03%), Postives = 142/211 (67.30%), Query Frame = 2 
Query:  101 MVKSLAVAAAFCASASAFMAPTPLARAPAAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQML-EGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 730
            M +SL V  +  ASASA +AP P A++  A    M+ QA  S++LPFM +PEALDG+ AGDVGFDP GF+S   + +LREAE+KHGRIC LA  GF ATD+G  LPG  H VSS+ AHD A   GAM Q+ LW+S  E I S  V QM+  GS R PG +GLDP    + P   +KKA ++L+E+ + RLAM AF G+VTQAVL   GFPY
Sbjct:    1 MARSL-VLISLAASASALVAPVPAAKSAVA----MNYQA--SEALPFMEKPEALDGTYAGDVGFDPFGFTSIFDVKWLREAEIKHGRICMLAWTGFVATDLGFTLPGDMHQVSSVLAHDVACKYGAMQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDPLDFCSTP---EKKADMKLKEITHCRLAMFAFSGVVTQAVLTGKGFPY 201
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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A7S3QAM2_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAM2_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.650e-54
Identity = 115/210 (54.76%), Postives = 141/210 (67.14%), Query Frame = 2 
Query:  113 LAVAAAFCASASAFMAPTPLARAPAAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMH---LPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQML-EGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 730
            LA+ A+  ASASAF      A A    +   S+   KS++LPF+P PE L+G + GDVGFDP+ FS F P+DFLREAELKHGRIC LA  GF A D+G     LP A   ++S+ AHDA +  GAM Q+ LW+S  E ISSVAV+QML E SGR PG FGLDP G  +    E++   ++L+E+KNGRLAMLAF G VTQAVL  G FPY
Sbjct:    3 LALLASLIASASAF------APASTGARSSTSLDYKKSEALPFLPYPENLEGYV-GDVGFDPLRFSDFAPMDFLREAELKHGRICMLAWTGFIAVDLGARIYPLPEAYEGLTSVTAHDALIQQGAMSQLFLWISVAETISSVAVMQMLYEESGREPGDFGLDPLGFLSGKS-EEEVNRMKLREIKNGRLAMLAFSGAVTQAVLTQGPFPY 204
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWB9_ECTSI1.290e-9775.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A836CK85_9STRA4.900e-6960.75Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A4D9CSZ5_9STRA1.140e-5857.36Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7R9YG40_9STRA2.950e-5862.57Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7T6P5_9STRA1.370e-5756.85Light-harvesting protein n=2 Tax=Nannochloropsis g... [more]
A0A7R9Z1N3_9STRA7.660e-5752.27Hypothetical protein n=2 Tax=Odontellaceae TaxID=2... [more]
A0A7S3LGC8_9STRA2.320e-5653.24Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2S869_9STRA2.880e-5554.95Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
F0Y5A3_AURAN1.070e-5454.03Putative plastid light harvesting protein isoform ... [more]
A0A7S3QAM2_9STRA1.650e-5454.76Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7975contigL-elsbetiae_contig7975:1691..7726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue5e-47
Seed eggNOG ortholog44056.XP_009035866.1
Preferred nameLhcr12
KEGG koko:K08907
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BPHY@1,2S1S0@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-25_003800.1
Exons6
Model size1616
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7975.16944.1prot_L-elsbetiae_contig7975.16944.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7975 1791..6724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.6141484-UTR-L-elsbetiae_contig7975:1690..17901622816881.6141484-UTR-L-elsbetiae_contig7975:1690..1790Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7975 1691..1790 +
1691683883.932265-UTR-L-elsbetiae_contig7975:1690..17901691683883.932265-UTR-L-elsbetiae_contig7975:1690..1790Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7975 1691..1790 +
1622816881.6850812-UTR-L-elsbetiae_contig7975:6724..75341622816881.6850812-UTR-L-elsbetiae_contig7975:6724..7534Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7975 6725..7534 +
1691683884.0013494-UTR-L-elsbetiae_contig7975:6724..75341691683884.0013494-UTR-L-elsbetiae_contig7975:6724..7534Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7975 6725..7534 +
1622816881.696779-UTR-L-elsbetiae_contig7975:7659..77261622816881.696779-UTR-L-elsbetiae_contig7975:7659..7726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7975 7660..7726 +
1691683884.010669-UTR-L-elsbetiae_contig7975:7659..77261691683884.010669-UTR-L-elsbetiae_contig7975:7659..7726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7975 7660..7726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.629233-CDS-L-elsbetiae_contig7975:1790..18921622816881.629233-CDS-L-elsbetiae_contig7975:1790..1892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7975 1791..1892 +
1691683883.9448948-CDS-L-elsbetiae_contig7975:1790..18921691683883.9448948-CDS-L-elsbetiae_contig7975:1790..1892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7975 1791..1892 +
1622816881.6398656-CDS-L-elsbetiae_contig7975:3786..38621622816881.6398656-CDS-L-elsbetiae_contig7975:3786..3862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7975 3787..3862 +
1691683883.9556427-CDS-L-elsbetiae_contig7975:3786..38621691683883.9556427-CDS-L-elsbetiae_contig7975:3786..3862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7975 3787..3862 +
1622816881.6512818-CDS-L-elsbetiae_contig7975:4668..48231622816881.6512818-CDS-L-elsbetiae_contig7975:4668..4823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7975 4669..4823 +
1691683883.966025-CDS-L-elsbetiae_contig7975:4668..48231691683883.966025-CDS-L-elsbetiae_contig7975:4668..4823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7975 4669..4823 +
1622816881.6624603-CDS-L-elsbetiae_contig7975:5449..56441622816881.6624603-CDS-L-elsbetiae_contig7975:5449..5644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7975 5450..5644 +
1691683883.976658-CDS-L-elsbetiae_contig7975:5449..56441691683883.976658-CDS-L-elsbetiae_contig7975:5449..5644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7975 5450..5644 +
1622816881.6737382-CDS-L-elsbetiae_contig7975:6613..67241622816881.6737382-CDS-L-elsbetiae_contig7975:6613..6724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7975 6614..6724 +
1691683883.9867182-CDS-L-elsbetiae_contig7975:6613..67241691683883.9867182-CDS-L-elsbetiae_contig7975:6613..6724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7975 6614..6724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7975.16944.1

>prot_L-elsbetiae_contig7975.16944.1 ID=prot_L-elsbetiae_contig7975.16944.1|Name=mRNA_L-elsbetiae_contig7975.16944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=213bp
MVKSLAVAAAFCASASAFMAPTPLARAPAAQQGGMSMQAAKSKSLPFMPQ
PEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATD
MGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLE
GSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQ
AVLYNGGFPYTG*
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mRNA from alignment at L-elsbetiae_contig7975:1691..7726+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7975.16944.1 ID=mRNA_L-elsbetiae_contig7975.16944.1|Name=mRNA_L-elsbetiae_contig7975.16944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6036bp|location=Sequence derived from alignment at L-elsbetiae_contig7975:1691..7726+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTGCCCTCTCTCCACCTCTGCGCTATCAACTAACTATCCATCCGTTCT
CCGACGCTCCCCAGACCTTCCAAGTTTTAAACTACCGGACAGACAGAATC
ATGGTGAAATCTCTCGCTGTTGCGGCTGCCTTCTGCGCTTCGGCGTCCGC
TTTTATGGCACCTACCCCGCTCGCACGCGCGCCTGCTGCCCAGCAGGGAG
GGGTGAGTTTTTGGTCTCAAATGTACCTAGCACGCATGTTTCCTGCTGGC
CTCTCTGCCTCCCTCACGTTACCCGTCGTCTCGCCGATGGCTTATCGACA
CAGCAGAGGATAGGACCTGGTATTTTCTGTCTCGTGACCCTGGGTGTTTT
TCTCGTTTACGTGTATGCATCGTAGGGTAGCAGCACCTACAACACAAGCA
GTATCTGAGCGGGGAGACACCGGTAGGAAAGAAAGACAAGAGCAGCGTTG
GCGCACATGCGTGCATGTCCAATCTTAGGGGGCTACCCTAGCGCACGTCC
TGCAGCAAAAGAATACTGCGGGTAGTCTTGCTGGTGTTACACTACCGCAC
CCGCCAGCGAAACCTAGCTAGTGCCATCGTACGTTTCAGCTGGCGCCCTT
TGAGGAGGGGGGGGGGGCTCGGTCTCTTCTTCATTTCTCAAGTTTATGTG
ACTCCACTGCGTGGTAAACTCGGAATAGTGTTGTTAGTTGTGTGTTGATG
GCGGAGACCTATTTATCCCAAACAACGGAGAAGCATGAAAACACAGTAAC
ACAGGTTTTATTCTCGTTTCGGGGCGGGGGGGCGGGGGGGGGTAGACTCC
TAAGCGCAGGCGAACTCCAGCCGCGAGAATCTTCAACGAGTTTGACAGGA
GCAACTCTTGTGTGCGAGATGACGCACAGCGAACCTTTCCAGAGTAATAA
CAGGCGTTGCCATGCCCGTCACAGCAGCTGCTCTGCATGCTCCCGCTCAA
AATCCTGTACATAGGCTACTCGCGTCCTCTGTCGACTTTCAGTGTATCTT
GAGCAATCGCACAGGGCGTGCAAATGGAGTGTGCATAAGGCCTACATAGC
GCCGTGATTTGGCCAGAGGGCCGGAAACCCAGCGTAGGCCTTATTTTTCG
CGTCTTGCTCCAACTGCATCCTAGGTCCAGTCTTCTGGTGCAGACCAGCT
TTTGCATCAGTGGTTTTATGTTTGGACGCGCGCTGGAGGTTACGTTCTTT
GTACATTGGCCTACAACTTCTCTTGTTTCTACCACTCAGCCCTCGTAGGT
CAAATCAAAATTTGGTGCCGAAACTACTGCTGTATGTCCACTCGTCTCTT
GTTCCAATAGAAACACATGTCATGTCGACTCTCAAAGTGTATCAGAGACT
AGCTTGGAGCCAACCTTCTGACCAATCGAAAGAAATTTTGTTTTGGGGGA
CAAAGGCGAGACCTCAAACGCAGGCTCCTGGGTGAGAGTGGCTGTGGCAA
ACATATGACTCGGGTCCAATGAAGGCGGCGCGTGCGCCCATAACCCCCAC
CCAGCCCCGTTAGGGCGGTTGTATGGTAGTGCAAGGAGGTATCTACTGCG
GTTTAGTGCGATCTTGGGCTTCTGGTTGCGGGGAACAGCGGTGTGTTTCT
CTGCGGCTGTTCGTGTGGGCAACAGCAATAGCATTTGCACCTGCGTTGCT
CCGGTTCTTCACTGCTGCTGTTGTATGTACTTGCCGATGGGAAGTTATTC
AAGCCGCGGAGCAAAACTCGTCTTGCCGATCGATTGATTGCCTATCGACC
GTGCTCGCCGGTCGTTTTTGAATCGAGTGTTTCCATGTCCCCTCTAGGTC
TTAACGTTGGTCGACACGGCACCGTTTGATGTGCGTTTTGACTTGGTTCG
GGCGTTCGATCGCATGAATTTCGCTGCCTGCAGCGCGCAAAAAGTCACCA
GGTCGAAAATGCTGCGCCATCGCTAAACAGATGGAAAACATGACCTACCA
TCTGAGCTACAGGTGCCACGGGCAAGGCACAATTTTACGCGCATGTTCCA
CGCGACACTGCAAATCATTTTATCTAATGAGTGTTTCTCCATCCCCTTCG
TCGCCGATGGTTACTATTCTTGTTGCGAATGATTGGGGCGCGACAGATGA
GCATGCAGGCGGCCAAGTCTAAGAGCCTGCCCTTCATGCCGCAGCCCGAA
GCTCTCGACGGCTCCATGGCCGGTAAGTAAGAACAAGAGAGGAAGGTCAC
ACGGGCGCGTGGTGTTGCTTGTAGTGCGTGGCTTGAGACTGAGAGGAATA
GGGTGGGGAGGTCTGGCAAATAGTAAACATATTACCTCGTAAAAGGTTAT
TCCAACATTAAATCCCGGTATCCCGTTTGTTATTTGTCGTATGCGAGGTA
GTTGTCAATACAACGTTGATTCGATTTTGGGGCTTCGAGTGTGGTTTGAT
GCCTCTGATGCCTGCACTATCGGAGGCAGGCAGGTGACGGGTGTGGCAAA
GTGAATCACCTCTCTTGATCCTGCGCTGGTTTGGGGCTGGGAGGCAGGCC
TACACACTTTGTCTCTACGCTGCAGCTTGGATGGAGCGGGCGTGCTGGTT
TGTGTTGATCCCAACCCTACCGCTGGTCGGCTGGGCGATAATGATCGGTC
AACGAGTGTCTTACCCCACCATCTATCGATCCCACCTCGCGCCGACTGCC
TGGCGAGTTGAAATTAGCTCAGTTTACCTCAGGCAACGTCGGGTTCTCTT
CGTTCATCCCCACCTCTCGGCATCTTAACCAGTCAACTAATAATAAATCA
GTTAAATATATTAACCTACTGCAGGCGACATCGGGTTCAACCCCTGGTTG
GGTCCGTGTCTTCCATCCCCCCATCAACCACACCAACTCTCGCTATCCTT
GACCAATCAATTCAATTGAACTTCAATTGAGCGCAGGCAAGTCGGGTTCA
CCCGTTGGGGTTACCTTCGTTCATCCCCGACAAATCACGCCACCTCTCGG
CATCCCTTGACCAATCAACTTACTGCAGGCGACGTTGGATTCGACCCGGT
CGGGTTCTCTTCGTTCATCCCCATCGACTTCCTCCGAGAGGCGGAACTCA
AGCACGGCCGCATCTGCCAGCTCGCCGTTGTGGGTTTCGCGGCGACCGAC
ATGGGCATGCACCTCCCCGGCGCAGAACACGCCGTGAGTATACAGTTTCA
TAGTATTTTTTCTAAGCTGGACTGTATACCTAGCTGCTCTACTTTGGCCG
ATGTATTCAATGTTGTAGTTTGGAGCACAAAACACACCAGCTCGTATGAC
AATGTTGGTGTTTTGTTTTTTCGCAGTCACCAGCAACCGCACACCCGGCT
GAAAATCATCTACCGTATTTCCGGCGTGGAATCGGCAACTTTGCATTGTT
CTATGTGAGAGCACAGCGGGGGGGGGGGGCGTACCTACCTCGTTGGTTTT
CAATATATTGTTCATTCACACGACCAGGCAAACCAGACTGCTTGTGTGTG
ACTTTACCCCCCCCTCCTTGTGCTGACGGCGGCATTAGGAGGCACGCAGT
TTGTTTGCTCTAAAATAAACATAGGGGGTCACGTATTGGTCACACGTGTC
CTTTTTTTTTAACTCTCTGCCCGCCAACCCACGCTTCTACCCCGCCCCGT
TCATGATTGTTGTGAGCTGATTTCCACCGCCCTTGTCCTCTGCGTTGAAG
AAATCAAAACCTTTGCTTCGTCCAACAGTCCGCTTCATCTCGCTAAATAT
ACTGCTCGATCAATCTCAAGAGATACCGCCCTTTGCCCTGTGCGTTAACA
AAACATCAGGTATCGTCGATCGCTGCGCACGACGCGGCCGTGGCGACTGG
GGCGATGCCGCAGATCCTTCTTTGGGTGTCCGCGTTCGAGGCGATCTCGT
CCGTGGCGGTGGTACAGATGCTCGAGGGATCCGGCCGCGCGCCAGGATAC
TTCGGGCTTGACCCCTTCGGGCTTTACACCAAGCCTGGGATGGAGAAGAA
GAAGGTGCGACGGGTGTCAAGCATGAACCAAAAAACAAAGTAAAGCGCTG
AATTTGACATCCAAAAAGGCCATACCACAACCTAGGGAAGAAAAGCACTG
CTTCTAAAAGATATCTCTGCTGCTGCTTGTGTGTTCCTCGGCTAAATAGT
TGTCCGTAACAAAGGGCTTGTTGTGCCCTTTCTGGGCAGGTTTCGTTTTG
GTTTTGGTTCGGTTCGGTTTTTCAATTGTCGTCGTTGTGGTCTTGCTGCG
TTCAAGATACGGCAGGCGGCAGCCACCGCCACCGCCTACGAGCTTGGCAG
TTAAAAAATCTCCCGGCTTGTTGGATATGCGGAGACAAGAGCCTATCAAC
TAAAACCTATATAAACTGTCCCCACAGAAAAAGGAATAAAAACTCGGCCT
CAGGAAAATAAAAGGGGCGGCGCCATCTGTATTACGGCTCTCTCGCTCCC
GTGACCGAAGACTGGTGTGATGGGAGGAGGCTCTACGGCTTTCAATCAAT
GTATACAAATGTCAGCGGTCTGCGTCCGGTCTGTAAACATATCGTTCCAG
AGGGATCTGTTGTAGGCATACTCACCCCCTTTTTTCCCGTTCCAAGATGT
ACCGCATAAAAATCAGATCGTCATTAGATACGCACCCTGCTTTTCTAGGA
TGAGTTGCTTCTAGAGGTTGCGACGAATTTTTTTGATATGGGGAGTACAG
TAGCGTCACGATAATACGGCGCATTTGTGGGCGCATTTTTCTCGATTTGA
GTGGCGCTCACTGTCTACGGGCTGTGTTGCATTGATTTGTAGCTCTTTCT
GTGGCCTAAAACGGCAAGGTACAGTAGATTGGTGCGTTTTAATCAGTCCC
TTTACAGATTTATATACAAGTGCCCAGACTGTTGACGTCGTTACCATTTT
CCACGAACGCTTGCTGAAACGCCTGTCTTTCTCTCTTTGCTGGCCCCCTT
GTGTTCGCGGTGTTTTCGTTCAGGCGACCCTTGAGCTGCAGGAGGTCAAG
AACGGCCGCCTTGCTATGTTGGCTTTCGGCGGCATGGTAACCCAGGCCGT
ACTCTACAACGGCGGCTTCCCTTACACGGGCTAACCAGGATTATTTTGCT
TTATGTGTTGGTTGGTTCTTGCCGTCGATAGAGTTGGACAGGGCTGTGGT
CTAGGTACAGCTTTGGTTTGATCATTTTTGACGTATTTTCAACCGATCGT
GTAGAAAGGGGGATGGGAATTGAATCACTTCCACCTCGGCGTTTTCGGGA
GAGCATCGTTGAAAATCTCGGGTTTCACAGGCGGGGGGGCAGCAATACCC
GCAGCTGTGTCACAGAGACCACATGTAGTGCAGGCAGCTCGTTTTTGGCC
TTGTCGCGGGCGTGTGCACGTGCGCTGTAGGGTTTAATGGTTCCTCTTGT
CTTCGAAGGAAGGGACCTATGTAGTAGTGGTTTTTTTTCCACTGTGCCCT
TTGCGATCAAGCTATATTTTAGAGCTTACATAGGACGTTCGTTGGGGGCA
TTGGACGTTCACGGGCCTCACGATTGTGGGTAGAGCGGACGGAAAAAGTG
CGCATCAAGCAGCCAGAGCTTTAGTCTGGTGTCTTCCAAGTTTCGTGGTT
TTGTTGCCGCTTTTTGCGGTTAAATCTTGAGATCCCACCTCTTTTTTTGG
TTATTTTTGGTAGAGGGGAAGTTGTTTGACTTGCCATTAACGCTGTCATG
GTACCAAGGCAAATGGCCAGTGTCAGCGAATGAATTTAATTTTTCTCTCT
ATTCTTGCTTCATATTTCGGGTATGCGACGTGGGCTTTGAACGGCTCCAA
TTTCTCCCGTAAAAAACATGCCCACATTTTAGTGGCGGAGAACAGAGAAA
TTAGTCAGTCGCTGGACGTTTTGTGGGCTGTTGTCACGCATTACCCCCCC
CCCCCCCCCCCCTTCTTTTCCTCTTCTATCCACCTCCGAACCACAACAAA
AACCACAAACGAAAAATACAAAAAAATTAGTCAGTCGGTCGACGTTTTGG
TGGGTGTTGTCACCCATTTCCCCCCCCCCCCCCCTCTTTTTTTCCACCTG
ATGAACCACCCGATGAATAAAAACCAACGCGTGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7975:1691..7726+

>mRNA_L-elsbetiae_contig7975.16944.1 ID=mRNA_L-elsbetiae_contig7975.16944.1|Name=mRNA_L-elsbetiae_contig7975.16944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1278bp|location=Sequence derived from alignment at L-elsbetiae_contig7975:1691..7726+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAAATCTCTCGCTGTTGCGGCTGCCTTCTGCGCTTCGGCGTCCGC
TTTTATGGCACCTACCCCGCTCGCACGCGCGCCTGCTGCCCAGCAGGGAG
GGATGGTGAAATCTCTCGCTGTTGCGGCTGCCTTCTGCGCTTCGGCGTCC
GCTTTTATGGCACCTACCCCGCTCGCACGCGCGCCTGCTGCCCAGCAGGG
AGGGATGAGCATGCAGGCGGCCAAGTCTAAGAGCCTGCCCTTCATGCCGC
AGCCCGAAGCTCTCGACGGCTCCATGGCCGATGAGCATGCAGGCGGCCAA
GTCTAAGAGCCTGCCCTTCATGCCGCAGCCCGAAGCTCTCGACGGCTCCA
TGGCCGGCGACGTTGGATTCGACCCGGTCGGGTTCTCTTCGTTCATCCCC
ATCGACTTCCTCCGAGAGGCGGAACTCAAGCACGGCCGCATCTGCCAGCT
CGCCGTTGTGGGTTTCGCGGCGACCGACATGGGCATGCACCTCCCCGGCG
CAGAACACGCCGCGACGTTGGATTCGACCCGGTCGGGTTCTCTTCGTTCA
TCCCCATCGACTTCCTCCGAGAGGCGGAACTCAAGCACGGCCGCATCTGC
CAGCTCGCCGTTGTGGGTTTCGCGGCGACCGACATGGGCATGCACCTCCC
CGGCGCAGAACACGCCGTATCGTCGATCGCTGCGCACGACGCGGCCGTGG
CGACTGGGGCGATGCCGCAGATCCTTCTTTGGGTGTCCGCGTTCGAGGCG
ATCTCGTCCGTGGCGGTGGTACAGATGCTCGAGGGATCCGGCCGCGCGCC
AGGATACTTCGGGCTTGACCCCTTCGGGCTTTACACCAAGCCTGGGATGG
AGAAGAAGAAGGTATCGTCGATCGCTGCGCACGACGCGGCCGTGGCGACT
GGGGCGATGCCGCAGATCCTTCTTTGGGTGTCCGCGTTCGAGGCGATCTC
GTCCGTGGCGGTGGTACAGATGCTCGAGGGATCCGGCCGCGCGCCAGGAT
ACTTCGGGCTTGACCCCTTCGGGCTTTACACCAAGCCTGGGATGGAGAAG
AAGAAGGCGACCCTTGAGCTGCAGGAGGTCAAGAACGGCCGCCTTGCTAT
GTTGGCTTTCGGCGGCATGGTAACCCAGGCCGTACTCTACAACGGCGGCT
TCCCTTACACGGGCTAAGCGACCCTTGAGCTGCAGGAGGTCAAGAACGGC
CGCCTTGCTATGTTGGCTTTCGGCGGCATGGTAACCCAGGCCGTACTCTA
CAACGGCGGCTTCCCTTACACGGGCTAA
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