prot_L-elsbetiae_contig7975.16944.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig7975.16944.1
Unique Name	prot_L-elsbetiae_contig7975.16944.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	213

Homology

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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 4.380e-101
Identity = 159/212 (75.00%), Postives = 179/212 (84.43%), Query Frame = 0

Query:    1 MVKSLAVAAAFCASASAFMAPTPLARAPAAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPYTG 212
            M+ +LA + A  ASASAF+ P  L R  A+   GMSMQA KSKSLPFMPQP  LDG+MAGD GFDP+GFS+FIP+DFLREAELKHGRICQLAVVGFAATD+G  LPGAEHAV+SIAAHDAAVATGAMPQILLWVSAFEAIS+VAV+QMLEGSGR PG FG DP  LY++P + KKKA +EL+E+ + RLAM AFGGMVTQAVL N GFPYTG
Sbjct:    1 MMNTLACSLAVLASASAFVPPAQLPRV-ASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPYTG 211

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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A836CK85_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK85_9STRA)

HSP 1 Score: 228 bits (580), Expect = 1.730e-72
Identity = 130/214 (60.75%), Postives = 155/214 (72.43%), Query Frame = 0

Query:    1 MVKSLAVAAAFCASASAFMAPTPLARAPAAQQG----GMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 210
            MVK+LAVA     SA+AF AP+  A A  A+       ++M A KS S+PFMP+PE LDG++ GDVGFDP+GFS+++ +DFLREAE+KHGRIC LAV G+ A D+G+HLPG  H V S+ AHD AV  GAM QILLW S FEAIS+V VVQML GSGR PGYFG DP   ++K    K K  LEL E+KNGRLAMLAF G+VTQA L N  FPY
Sbjct:    3 MVKALAVAG-LVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLN-FSKDAASKAK--LELNEIKNGRLAMLAFSGIVTQAALGND-FPY 211

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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A4D9CSZ5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSZ5_9STRA)

HSP 1 Score: 201 bits (512), Expect = 2.590e-62
Identity = 110/188 (58.51%), Postives = 136/188 (72.34%), Query Frame = 0

Query:   23 PLARAPAAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 210
            PL  A    +G +SM A KSKS+PF+P+P ALDG+ AGDVGFDPVGF+S++P+ +L+EAE+KH RI  LA +G+   D  +HLPG  HAVSS+AAHD AV +GA+ QIL+W S  EAIS +A+ QMLEGSGR PG F  DP G + K     KK  L+L E+KNGRLAMLAF G+VTQA L    FPY
Sbjct:   18 PLMPATTRTRGAVSMMAEKSKSIPFLPRPPALDGTAAGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLG-FAKDEQTLKK--LQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 201

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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A7R9YG40_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG40_9STRA)

HSP 1 Score: 202 bits (513), Expect = 4.710e-62
Identity = 107/171 (62.57%), Postives = 131/171 (76.61%), Query Frame = 0

Query:   41 KSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEG-SGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 210
            KS SLPFMP+P ALDG++ GDVGFDP+G S+ + + ++REAELKHGRIC LAVVGF ATD+G+HLPGA H V S+AAHDAAV  G M QILLWVS  E  S++AV +M+ G + R PG F LD  G Y K   ++KK  L+L+E+KNGRLAM+AFGGMVTQAVL    FP+
Sbjct:   63 KSASLPFMPRPAALDGTLVGDVGFDPLGLSNAVDVRWMREAELKHGRICMLAVVGFIATDLGIHLPGAVHNVGSVAAHDAAVKFGGMSQILLWVSVAEVWSAIAVKEMMLGETDRQPGDFKLDLLGNYAKANDQQKK-DLQLKELKNGRLAMIAFGGMVTQAVLTGKPFPF 232

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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: W7T6P5_9STRA (Light-harvesting protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6P5_9STRA)

HSP 1 Score: 201 bits (510), Expect = 4.410e-61
Identity = 112/196 (57.14%), Postives = 140/196 (71.43%), Query Frame = 0

Query:   15 ASAFMAPTPLARAPAAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 210
            A+AF+ P P+       +G +SM A KSKS+PF+P+P ALDG+  GDVGFDPVGF+S++P+ +L+EAE+KH RI  LA +G+   D  +HLPG  HAVSS+AAHD AV +GA+ QIL+W S  EAIS VA+ QMLEGSGR PG F  DP G + K     KK  L+L E+KNGRLAMLAF G+VTQA L    FPY
Sbjct:   82 AAAFVPPMPVTTR---ARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLG-FAKDEQTLKK--LQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 270

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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A7S3LGC8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGC8_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.450e-59
Identity = 115/216 (53.24%), Postives = 145/216 (67.13%), Query Frame = 0

Query:    1 MVKSLAVAAAFCASASAFMAPTPLARAPAAQQGGMSMQA---AKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHL---PGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 210
            MVKS A+ A+  ASA+AF AP P  RA        + +A     SK+LPF+  P   +G + G  GFDP  FS F+PI FL+EAE+KHGRIC +A VGFAA DMG+ +   P A   +++I AHDA V  GAM Q+LLW S  E   ++AV+QML GSGR PG FG DP G + K    +K+A ++L+E+KNGRLAMLAFGG+VTQAVL  GGFPY
Sbjct:    6 MVKS-AILASLIASAAAF-APAPTGRAATKVYEDAAAEAKPYVASKALPFLEAPPNCEG-LVGSAGFDPFRFSDFVPIQFLQEAEIKHGRICMMAFVGFAAVDMGLRVYPTPEAYEGLTAITAHDALVKEGAMGQLLLWFSIAEVFDTIAVIQMLNGSGRQPGEFGFDPLG-FLKGASPEKEADMQLKEIKNGRLAMLAFGGLVTQAVLTQGGFPY 217

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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A7S2S869_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S869_9STRA)

HSP 1 Score: 193 bits (491), Expect = 5.740e-59
Identity = 100/182 (54.95%), Postives = 131/182 (71.98%), Query Frame = 0

Query:   29 AAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 210
            A  +G M M AAKS ++PF+P+P  LDGS+ GDVGFDP+G S ++P+D+LRE+ELKHGRIC LAV GFAATD+G  LPG +  V+S  AH+ AV+ G M  +   + A E IS +A+ + L GSGRA G +GLDP  L  KP    K A ++++E+ + RLAMLAF GMVTQAVL++ GFPY
Sbjct:   35 ATHRGAMKMMAAKSAAIPFLPKPAELDGSLIGDVGFDPLGVSDWMPLDYLRESELKHGRICMLAVTGFAATDLGFKLPGEQFNVASADAHNMAVSAGYMTVMGCAIFALECISGLAIQESLAGSGRAAGDYGLDPLKLSDKP---DKMADMQMKEITHARLAMLAFSGMVTQAVLFDKGFPY 213

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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A7R9Z1N3_9STRA (Hypothetical protein n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9Z1N3_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.790e-58
Identity = 114/209 (54.55%), Postives = 139/209 (66.51%), Query Frame = 0

Query:    5 LAVAAAFCASASAFMAPTPLARAPAAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMH---LPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 210
            LAV A+   SA+AF AP    RA        S+ A KSK+LPF+P PE L G +  + GFDP  FS F+P+DFLREAELKHGRIC LA +GF A D G     LP A   ++S+ AHD  V  GAM Q+ LW+S  E +S+VAV QML GSGR PG FGLDP G + K   E++   ++L+E+KNGRLAMLAF G+VTQAVL  G FPY
Sbjct:   16 LAVLASLLGSAAAF-APASTGRAVT------SLSAEKSKALPFLPYPENLKGYVGEEAGFDPFRFSDFVPMDFLREAELKHGRICMLAWLGFCAVDCGWRIYPLPEAYDGLTSVTAHDKLVEYGAMSQLFLWISLAEVVSTVAVTQMLTGSGREPGDFGLDPIG-FLKDKSEEEVTRMKLRELKNGRLAMLAFSGVVTQAVLTQGPFPY 216

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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: A0A7S1DAW8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAW8_CYCTE)

HSP 1 Score: 189 bits (481), Expect = 1.410e-57
Identity = 99/173 (57.23%), Postives = 120/173 (69.36%), Query Frame = 0

Query:   41 KSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHL---PGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLEGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 210
            KS +LPF+P PE L G +  D GFDP  FS F+P+DFLREAELKHGRI  LA VGF A D+G  +   P A   ++S+ AHDA V  GAM QI LW    E IS++AVVQML+GSGR PGYFG DP G       E+ K  ++++E++NGRLAMLAF G+VTQAVL  G FPY
Sbjct:   33 KSPALPFLPYPENLKGYVGDDAGFDPFRFSDFVPVDFLREAELKHGRIAMLAYVGFVAVDLGFKIYPTPEAYEGLTSVTAHDALVEQGAMGQIFLWTGLAEVISTIAVVQMLQGSGREPGYFGFDPLGFLNGKSDEEVKL-MKMREIQNGRLAMLAFSGIVTQAVLTQGPFPY 204

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BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN)

HSP 1 Score: 189 bits (480), Expect = 1.820e-57
Identity = 110/199 (55.28%), Postives = 136/199 (68.34%), Query Frame = 0

Query:   13 ASASAFMAPTPLARAPAAQQGGMSMQAAKSKSLPFMPQPEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATDMGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQML-EGSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQAVLYNGGFPY 210
            ASASA +AP P A++  A    M+ QA  S++LPFM +PEALDG+ AGDVGFDP GF+S   + +LREAE+KHGRIC LA  GF ATD+G  LPG  H VSS+ AHD A   GAM Q+ LW+S  E I S  V QM+  GS R PG +GLDP    + P   +KKA ++L+E+ + RLAM AF G+VTQAVL   GFPY
Sbjct:   12 ASASALVAPVPAAKSAVA----MNYQA--SEALPFMEKPEALDGTYAGDVGFDPFGFTSIFDVKWLREAEIKHGRICMLAWTGFVATDLGFTLPGDMHQVSSVLAHDVACKYGAMQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDPLDFCSTP---EKKADMKLKEITHCRLAMFAFSGVVTQAVLTGKGFPY 201

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig7975.16944.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWB9_ECTSI	4.380e-101	75.00	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A836CK85_9STRA	1.730e-72	60.75	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A4D9CSZ5_9STRA	2.590e-62	58.51	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
A0A7R9YG40_9STRA	4.710e-62	62.57	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
W7T6P5_9STRA	4.410e-61	57.14	Light-harvesting protein n=2 Tax=Nannochloropsis g...	[more]
A0A7S3LGC8_9STRA	3.450e-59	53.24	Hypothetical protein n=1 Tax=Amphora coffeiformis ...	[more]
A0A7S2S869_9STRA	5.740e-59	54.95	Hypothetical protein n=2 Tax=Rhizochromulina marin...	[more]
A0A7R9Z1N3_9STRA	1.790e-58	54.55	Hypothetical protein n=2 Tax=Odontellaceae TaxID=2...	[more]
A0A7S1DAW8_CYCTE	1.410e-57	57.23	Hypothetical protein n=1 Tax=Cyclophora tenuis Tax...	[more]
F0Y5A3_AURAN	1.820e-57	55.28	Putative plastid light harvesting protein isoform ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 45..211 e-value: 3.1E-34 score: 120.4
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 51..201 e-value: 2.1E-34 score: 119.4
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 5..211
None	No IPR available	PANTHER	PTHR21649:SF7	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 5..211
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..212
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..17 score: 0.567
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 40..207

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig7975	contig	L-elsbetiae_contig7975:1791..6724 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig7975.16944.1	mRNA_L-elsbetiae_contig7975.16944.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig7975 1691..7726 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig7975.16944.1 ID=prot_L-elsbetiae_contig7975.16944.1|Name=mRNA_L-elsbetiae_contig7975.16944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=213bp
MVKSLAVAAAFCASASAFMAPTPLARAPAAQQGGMSMQAAKSKSLPFMPQ
PEALDGSMAGDVGFDPVGFSSFIPIDFLREAELKHGRICQLAVVGFAATD
MGMHLPGAEHAVSSIAAHDAAVATGAMPQILLWVSAFEAISSVAVVQMLE
GSGRAPGYFGLDPFGLYTKPGMEKKKATLELQEVKNGRLAMLAFGGMVTQ
AVLYNGGFPYTG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln