mRNA_L-elsbetiae_contig7844.16803.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7844.16803.1 vs. uniprot
Match: D8LG64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG64_ECTSI) HSP 1 Score: 211 bits (537), Expect = 1.120e-58 Identity = 139/370 (37.57%), Postives = 180/370 (48.65%), Query Frame = 1 Query: 145 LLDDETSRVVLSHLPATHLGGSALVSKAWETLSSKDDLWHPFLSKTDPMSALGEERLRVMSLQYSCKQVVLELSTRLCSCCREPTNGFFVLTCSRVCLSCFETDPSVKMSSVSYARSHYLLSKSQEAQLPTLRVEKAEETGLIGTNDSAITVTTISAAKASAVNRWGSEEAFENEMSTRRAKAEASYEARKQAFN-DQSRGAADGLSDSPPQFSQGSSKHQAPP-------KPRRHPSCPRILGLGNETNYVGINQQGHHAVCGEKYGFFTVVNDAYFDRGPTVVIT-------------------DDDPESYETD--------DMYDMWDEYGSAGGYVAWSEESSPEAHHGRKLAEALKTAKHGTTIE 1149 +LDD + +L++LP + LG S L+SKAW + + LW PFLS DP+S LG +L ++ Q++C+QVV +LS RLCS CREPT+GFF LTCSRVC SCFETD M S+ RWGSEE F+ EM+ R+ KAEA++ AR A+ Q + A S S + S +PP KP+R+PS PRI L ETNYV NQQ H V GEKYGF+ +VNDA+FD GPT+ I+ DDD + D + Y + + Y W + GR EALKTAK GTTI+ Sbjct: 1 MLDDAVAGDILAYLPCSDLGASNLISKAWLAPNKNESLWRPFLSTVDPISILGPAKLSELAEQFTCRQVVTQLSLRLCSLCREPTSGFFTLTCSRVCESCFETDARATMCSL----------------------------------------------------RWGSEEGFQAEMTARKVKAEAAHRARVAAYEITQQQSTAKSPSLSREGGGEEDSTSTSPPAEPSPLEKPKRYPSTPRICRLSRETNYVASNQQEGHGVRGEKYGFYRIVNDAFFDAGPTIAISCATSSPSPHGPNTSTNTSNDDDLDENVCDVTCSACSSNSYARFHTMTESESYCPWDVQGYERERRGRVFVEALKTAKDGTTIK 318
BLAST of mRNA_L-elsbetiae_contig7844.16803.1 vs. uniprot
Match: D8LG65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG65_ECTSI) HSP 1 Score: 197 bits (500), Expect = 2.050e-52 Identity = 139/373 (37.27%), Postives = 192/373 (51.47%), Query Frame = 1 Query: 145 LLDDETSRVVLSHLPATHLGGSALVSKAWETLSSKDDLWHPFLSKTDPMSALGEERLRVMSLQYSCKQVVLELSTRLCSCCREPTNGFFVLTCSRVCLSCFETDPSVKMSSVSYARSHYLLSKSQEAQLPTLRVEKAEETGLIGT-----NDSAITVTTISAAKASAVNRWGSEEAFENEMSTRRAKAEASYEARKQAFNDQSRGAADGLSDSPPQFSQGSS---KHQAPPKPRRH----PSCPRILGLGNETNYVGINQQGHHAVCGEKYGFFTV-------------VNDAYFDRGP---TVVITDDDPESYE--------TDDMYDMWDEYGSAGGYVAWSEESSPEAHHGRKLAEALKTAKHGTTIEIT 1155 +LDD + +L++LP + LG S L+SKAW + + LW PFLS DP+S LG +L ++ Q++C+QVV +LS L S CR+PT+GFF +TCSRVC CF TD VKM S+S+A+ H+LLS SQ A+LPTL V+KA ETGL G N +IT TT SA K+SA+ RWGSEE F+ EMS R+ KAEA++ AR A+ A G + P+ G +H P R P+ P + T + + E T+ + A GP T +DD + + + Y + + Y W + GR EALKTAK GTTI+++ Sbjct: 1 MLDDAVAGDILAYLPYSDLGVSNLISKAWLAPNENESLWRPFLSTVDPISILGPAKLSELAEQFTCRQVVTQLSLPLRSLCRDPTSGFFTVTCSRVCEPCFGTDTRVKMCSLSFAKHHFLLSSSQAARLPTLHVDKAYETGLPGVERFSHNKRSITRTTCSAGKSSALARWGSEEVFQAEMSARKGKAEAAHRARVAAYEAAQESMA-GRAPPLPETPSGKKIRHRHHLPLSHLRSRNQSPTRPPLAFAALATKRISWERTSKSTTASEARSMGTIRLSTTPSSTLVRRLLSAPNPHGPDTSTNTSNNDDLDENVCGASCNSCSSNSYARFHTMTESESYCPWDVQGYERERRGRAFVEALKTAKEGTTIKVS 372
BLAST of mRNA_L-elsbetiae_contig7844.16803.1 vs. uniprot
Match: A0A835ZL97_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL97_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.840e-17 Identity = 79/222 (35.59%), Postives = 109/222 (49.10%), Query Frame = 1 Query: 376 CSCCREPTNGFFVLTCSRVCLSCFETDPSVKMSSVSYA--------RSHYLLSKSQEAQLPTLRVEKAEETGLIGTNDSAITVTTISAAKASAVNRWGSEE------------------AFENEMSTRRAKAEASYEARKQAFN-----DQSRGAADGLSDSPPQFSQGSSKHQAPPKPRRHPSCPRILGLGNETNYVGINQQGHHAVCGEKYGFFTVVNDA 948 C C T C+R C +CF P+ K+ SVSY ++H+LLS SQEA+L TL V +A E+G + +++ +T + A+ SA+ R+GSEE AF+ EM+ RR+KA+ ++AR +A ++RG A + SP S PRILGL NETNYVG NQ H V G KYG V +DA Sbjct: 785 CVACGVRTGWISYCACARTCAACFRA-PTAKLCSVSYTXXXXXXXXKAHFLLSASQEAELVTLVVPEAAESGCVANRKASLPITHLGRARDSAIRRFGSEEGIMHLSRAXXXXXXXXXXAFDAEMTRRRSKAQDGHDARYRAAQVATTEARARGDASAVIKSP--------------------SSPRILGLANETNYVGANQASGH-VYGAKYGHVFVSDDA 984 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7844.16803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7844.16803.1 >prot_L-elsbetiae_contig7844.16803.1 ID=prot_L-elsbetiae_contig7844.16803.1|Name=mRNA_L-elsbetiae_contig7844.16803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=556bp MATRASTRSTRGRSSKLGALDQSRSTSRRKRPVVAASAGVFPLLDDETSRback to top mRNA from alignment at L-elsbetiae_contig7844:3960..9261+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7844.16803.1 ID=mRNA_L-elsbetiae_contig7844.16803.1|Name=mRNA_L-elsbetiae_contig7844.16803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5302bp|location=Sequence derived from alignment at L-elsbetiae_contig7844:3960..9261+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7844:3960..9261+ >mRNA_L-elsbetiae_contig7844.16803.1 ID=mRNA_L-elsbetiae_contig7844.16803.1|Name=mRNA_L-elsbetiae_contig7844.16803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3336bp|location=Sequence derived from alignment at L-elsbetiae_contig7844:3960..9261+ (Laminarionema elsbetiae ELsaHSoW15)back to top |