mRNA_L-elsbetiae_contig7817.16767.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7817.16767.1 vs. uniprot
Match: D8LNG2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG2_ECTSI) HSP 1 Score: 375 bits (964), Expect = 1.190e-123 Identity = 210/318 (66.04%), Postives = 238/318 (74.84%), Query Frame = 1 Query: 10 GVATLFLFLVLMVLVDVMKNRRVSGELQWHKYYMRAVVESEQHWHLGWRFEDLARQASAQRARMIVLLETLHE--IPSQRHGGAFSISNPAKAAXXXXXXXXXXXXXXXXXXXXXXXE---VSTAVLLSRVLAEEEDLNRIVSVQCATRPGIYVQQVGMHAMVASVEASCKVYSAATTLDPHALFEKIELGEGRFALRAFSNRRFLRVTPPGES---DDWTA-----GAPEVGLPEVFQMRDGLVYSEIMHGYLSCSGGAAEAEVKGFIGEYLWQNEHNYQLIFKQASEACAIERARVLRDVSRAVHEEQRRGADAYI 924 G+A + F VL+VLV+VMKNRR+SGEL+W K YMRAVV+ E+HW+LGWR EDLA+Q QRARM VLLETL +P +H G FSI AKAA XXXX E VS AV S+V AEEE+LNR+V++ CATRP +YVQ VGMH MVAS EA CKVYSAAT+LDPHALFEKIELGEGRFALRAFSNRRFLRV PP + DWT GAPEVGLPEVFQMRDG+VYSE+MHGYLSCSG AEAEVKGF+GEYLWQNE +YQLIF Q S A+ERAR+LRDVSRAV+ Q+R AD YI Sbjct: 9 GLAAVLFFPVLLVLVNVMKNRRISGELRWDKLYMRAVVDDEEHWNLGWRLEDLAKQTLNQRARMAVLLETLKNTPLPDLKHSGVFSIPKAAKAAAAWVGGXXXXTGDGAPRGAEGEEEGGGVSRAVSFSKVFAEEENLNRVVAISCATRPNVYVQ-VGMHPMVASAEAGCKVYSAATSLDPHALFEKIELGEGRFALRAFSNRRFLRVVPPPPTTGWSDWTVWALEVGAPEVGLPEVFQMRDGMVYSEVMHGYLSCSGAGAEAEVKGFVGEYLWQNEESYQLIFDQVSHE-AVERARLLRDVSRAVNYRQQREADEYI 324
BLAST of mRNA_L-elsbetiae_contig7817.16767.1 vs. uniprot
Match: A0A6H5JLE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE1_9PHAE) HSP 1 Score: 263 bits (673), Expect = 4.240e-83 Identity = 157/310 (50.65%), Postives = 185/310 (59.68%), Query Frame = 1 Query: 10 GVATLFLFLVLMVLVDVMKNRRVSGELQWHKYYMRAVVESEQHWHLGWRFEDLARQASAQRARMIVLLETLHE--IPSQRHGGAFSISNPAKAAXXXXXXXXXXXXXXXXXXXXXXXE---VSTAVLLSRVLAEEEDLNRIVSVQCATRPGIYVQQVGMHAMVASVEASCKVYSAATTLDPHALFEKIELGEGRFALRAFSNRRFLRVTPPGESDDWTAGAPEVGLPEVFQMRDGLVYSEIMHGYLSCSGGAAEAEVKGFIGEYLWQNEHNYQLIFKQASEACAIERARVLRDVSRAVHEEQRRGADAYI 924 G+A + F VL+VLV+VMKNRR+SGEL+W K YM AVV+ E+HW+LGWR EDLA+Q QRARM VLLETL +P +H FSI AKAA E VS AV S+V +EEEDLNR+V++ CATRP +YVQ VGMH MVAS EA CKVYSAAT+LDPHALFEK+ GAPE+GLPEVFQMRDG+VYSE+MHGYLSCSG AE K A+ERAR+LRDVSRAV++ Q+R AD YI Sbjct: 88 GLAVVLFFPVLLVLVNVMKNRRISGELRWDKLYMHAVVDDEEHWNLGWRLEDLAKQTLNQRARMAVLLETLKSTPVPDVKHSSVFSIPKAAKAAAAWVRGGGGGTAEGAPGEAEGEDEGGGVSRAVSFSKVFSEEEDLNRVVAISCATRPNVYVQ-VGMHPMVASAEAGCKVYSAATSLDPHALFEKV-------------------------------GAPEIGLPEVFQMRDGMVYSEVMHGYLSCSGAGAEVSHK-------------------------AVERARLLRDVSRAVNDRQQREADEYI 340
BLAST of mRNA_L-elsbetiae_contig7817.16767.1 vs. uniprot
Match: A0A7S0SZW8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZW8_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.470e-6 Identity = 40/145 (27.59%), Postives = 69/145 (47.59%), Query Frame = 1 Query: 415 IVSVQCATRPGIYVQQVGMHAMVASVEASCKVYSAAT----TLDPHALFEKIELGEGRFALRAFSNRRFLRVTPPGESDD---W--TAGAPEVGLPEVFQM-RDGLVYSEIMHGYLSCSGGAAEAEVKGFIGEYLWQNEHNYQLI 819 I ++C + G ++ VG + SC+++ + PHA+FEKI L G FALR+ ++ + + PP W G P +G E F++ +G +YS + G L CS ++ VKG+ Y N+ ++ + Sbjct: 73 IYQIKCQSEDGALIR-VGQNDFRTDERDSCQLFGSNAGNNKETGPHAMFEKIILANGEFALRSLGSKLLVSIIPPPSDHSELPWKLVIGGPSIGTAERFRLTEEGYIYSVALDGLLQCS---SDQMVKGYSSTYGTYNKFIFERV 213 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7817.16767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7817.16767.1 >prot_L-elsbetiae_contig7817.16767.1 ID=prot_L-elsbetiae_contig7817.16767.1|Name=mRNA_L-elsbetiae_contig7817.16767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=308bp VCFGVATLFLFLVLMVLVDVMKNRRVSGELQWHKYYMRAVVESEQHWHLGback to top mRNA from alignment at L-elsbetiae_contig7817:485..6726- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7817.16767.1 ID=mRNA_L-elsbetiae_contig7817.16767.1|Name=mRNA_L-elsbetiae_contig7817.16767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6242bp|location=Sequence derived from alignment at L-elsbetiae_contig7817:485..6726- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7817:485..6726- >mRNA_L-elsbetiae_contig7817.16767.1 ID=mRNA_L-elsbetiae_contig7817.16767.1|Name=mRNA_L-elsbetiae_contig7817.16767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1848bp|location=Sequence derived from alignment at L-elsbetiae_contig7817:485..6726- (Laminarionema elsbetiae ELsaHSoW15)back to top |