prot_L-elsbetiae_contig7817.16767.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7817.16767.1
Unique Nameprot_L-elsbetiae_contig7817.16767.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length308
Homology
BLAST of mRNA_L-elsbetiae_contig7817.16767.1 vs. uniprot
Match: D8LNG2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG2_ECTSI)

HSP 1 Score: 375 bits (964), Expect = 1.190e-123
Identity = 210/318 (66.04%), Postives = 238/318 (74.84%), Query Frame = 0
Query:    4 GVATLFLFLVLMVLVDVMKNRRVSGELQWHKYYMRAVVESEQHWHLGWRFEDLARQASAQRARMIVLLETLHE--IPSQRHGGAFSISNPAKAAXXXXXXXXXXXXXXXXXXXXXXXE---VSTAVLLSRVLAEEEDLNRIVSVQCATRPGIYVQQVGMHAMVASVEASCKVYSAATTLDPHALFEKIELGEGRFALRAFSNRRFLRVTPPGES---DDWTA-----GAPEVGLPEVFQMRDGLVYSEIMHGYLSCSGGAAEAEVKGFIGEYLWQNEHNYQLIFKQASEACAIERARVLRDVSRAVHEEQRRGADAYI 308
            G+A +  F VL+VLV+VMKNRR+SGEL+W K YMRAVV+ E+HW+LGWR EDLA+Q   QRARM VLLETL    +P  +H G FSI   AKAA      XXXX             E   VS AV  S+V AEEE+LNR+V++ CATRP +YVQ VGMH MVAS EA CKVYSAAT+LDPHALFEKIELGEGRFALRAFSNRRFLRV PP  +    DWT      GAPEVGLPEVFQMRDG+VYSE+MHGYLSCSG  AEAEVKGF+GEYLWQNE +YQLIF Q S   A+ERAR+LRDVSRAV+  Q+R AD YI
Sbjct:    9 GLAAVLFFPVLLVLVNVMKNRRISGELRWDKLYMRAVVDDEEHWNLGWRLEDLAKQTLNQRARMAVLLETLKNTPLPDLKHSGVFSIPKAAKAAAAWVGGXXXXTGDGAPRGAEGEEEGGGVSRAVSFSKVFAEEENLNRVVAISCATRPNVYVQ-VGMHPMVASAEAGCKVYSAATSLDPHALFEKIELGEGRFALRAFSNRRFLRVVPPPPTTGWSDWTVWALEVGAPEVGLPEVFQMRDGMVYSEVMHGYLSCSGAGAEAEVKGFVGEYLWQNEESYQLIFDQVSHE-AVERARLLRDVSRAVNYRQQREADEYI 324          
BLAST of mRNA_L-elsbetiae_contig7817.16767.1 vs. uniprot
Match: A0A6H5JLE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE1_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 4.240e-83
Identity = 157/310 (50.65%), Postives = 185/310 (59.68%), Query Frame = 0
Query:    4 GVATLFLFLVLMVLVDVMKNRRVSGELQWHKYYMRAVVESEQHWHLGWRFEDLARQASAQRARMIVLLETLHE--IPSQRHGGAFSISNPAKAAXXXXXXXXXXXXXXXXXXXXXXXE---VSTAVLLSRVLAEEEDLNRIVSVQCATRPGIYVQQVGMHAMVASVEASCKVYSAATTLDPHALFEKIELGEGRFALRAFSNRRFLRVTPPGESDDWTAGAPEVGLPEVFQMRDGLVYSEIMHGYLSCSGGAAEAEVKGFIGEYLWQNEHNYQLIFKQASEACAIERARVLRDVSRAVHEEQRRGADAYI 308
            G+A +  F VL+VLV+VMKNRR+SGEL+W K YM AVV+ E+HW+LGWR EDLA+Q   QRARM VLLETL    +P  +H   FSI   AKAA                       E   VS AV  S+V +EEEDLNR+V++ CATRP +YVQ VGMH MVAS EA CKVYSAAT+LDPHALFEK+                               GAPE+GLPEVFQMRDG+VYSE+MHGYLSCSG  AE   K                         A+ERAR+LRDVSRAV++ Q+R AD YI
Sbjct:   88 GLAVVLFFPVLLVLVNVMKNRRISGELRWDKLYMHAVVDDEEHWNLGWRLEDLAKQTLNQRARMAVLLETLKSTPVPDVKHSSVFSIPKAAKAAAAWVRGGGGGTAEGAPGEAEGEDEGGGVSRAVSFSKVFSEEEDLNRVVAISCATRPNVYVQ-VGMHPMVASAEAGCKVYSAATSLDPHALFEKV-------------------------------GAPEIGLPEVFQMRDGMVYSEVMHGYLSCSGAGAEVSHK-------------------------AVERARLLRDVSRAVNDRQQREADEYI 340          
BLAST of mRNA_L-elsbetiae_contig7817.16767.1 vs. uniprot
Match: A0A7S0SZW8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZW8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.470e-6
Identity = 40/145 (27.59%), Postives = 69/145 (47.59%), Query Frame = 0
Query:  139 IVSVQCATRPGIYVQQVGMHAMVASVEASCKVYSAAT----TLDPHALFEKIELGEGRFALRAFSNRRFLRVTPPGESDD---W--TAGAPEVGLPEVFQM-RDGLVYSEIMHGYLSCSGGAAEAEVKGFIGEYLWQNEHNYQLI 273
            I  ++C +  G  ++ VG +        SC+++ +         PHA+FEKI L  G FALR+  ++  + + PP        W    G P +G  E F++  +G +YS  + G L CS   ++  VKG+   Y   N+  ++ +
Sbjct:   73 IYQIKCQSEDGALIR-VGQNDFRTDERDSCQLFGSNAGNNKETGPHAMFEKIILANGEFALRSLGSKLLVSIIPPPSDHSELPWKLVIGGPSIGTAERFRLTEEGYIYSVALDGLLQCS---SDQMVKGYSSTYGTYNKFIFERV 213          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7817.16767.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNG2_ECTSI1.190e-12366.04Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JLE1_9PHAE4.240e-8350.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0SZW8_9STRA1.470e-627.59Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..308
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.665
NoneNo IPR availableTMHMMTMhelixcoord: 2..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7817contigL-elsbetiae_contig7817:485..6726 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7817.16767.1mRNA_L-elsbetiae_contig7817.16767.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7817 485..6726 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7817.16767.1 ID=prot_L-elsbetiae_contig7817.16767.1|Name=mRNA_L-elsbetiae_contig7817.16767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=308bp
VCFGVATLFLFLVLMVLVDVMKNRRVSGELQWHKYYMRAVVESEQHWHLG
WRFEDLARQASAQRARMIVLLETLHEIPSQRHGGAFSISNPAKAAAAARA
GADGKGGGGGGGGGGGGGEVSTAVLLSRVLAEEEDLNRIVSVQCATRPGI
YVQQVGMHAMVASVEASCKVYSAATTLDPHALFEKIELGEGRFALRAFSN
RRFLRVTPPGESDDWTAGAPEVGLPEVFQMRDGLVYSEIMHGYLSCSGGA
AEAEVKGFIGEYLWQNEHNYQLIFKQASEACAIERARVLRDVSRAVHEEQ
RRGADAYI
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