mRNA_L-elsbetiae_contig7810.16761.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7810.16761.1
Unique NamemRNA_L-elsbetiae_contig7810.16761.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7810.16761.1 vs. uniprot
Match: A0A6H5L2U1_9PHAE (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.840e-10
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:  172 LRTALFQRRHRECVRILVVIACFAFCRRGRAAIR----KVASPFSFLLWCLGLDRWRHRSAANSLLRGNNN 372
            +R AL +R   +C+RILV++AC A CRRGRAA+     KV SP SFLL C+GL R R R+   +LL GN N
Sbjct:   11 VRLALQRRNGSDCLRILVMLACLACCRRGRAALSLTVCKVTSPVSFLLCCIGLSRRRDRNNG-TLLCGNGN 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7810.16761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2U1_9PHAE4.840e-1053.52BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7810contigL-elsbetiae_contig7810:1661..2862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog2880.D7FNF7
KEGG rclassRC00010,RC02798
KEGG koko:K01915,ko:K10443,ko:K13956
KEGG ReactionR00253
KEGG Pathwayko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG4441@1,KOG4441@2759
EC6.3.1.2
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Ec32 ortholog descriptionBTB/Kelch-associated
Ec32 orthologEc-01_005610.1
Exons2
Model size378
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.471879-CDS-L-elsbetiae_contig7810:1662..17611622816865.471879-CDS-L-elsbetiae_contig7810:1662..1761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7810 1663..1761 -
1691683871.8724337-CDS-L-elsbetiae_contig7810:1662..17611691683871.8724337-CDS-L-elsbetiae_contig7810:1662..1761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7810 1663..1761 -
1622816865.4843416-CDS-L-elsbetiae_contig7810:2586..28621622816865.4843416-CDS-L-elsbetiae_contig7810:2586..2862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7810 2587..2862 -
1691683871.8858228-CDS-L-elsbetiae_contig7810:2586..28621691683871.8858228-CDS-L-elsbetiae_contig7810:2586..2862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7810 2587..2862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7810.16761.1prot_L-elsbetiae_contig7810.16761.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7810 1663..2862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7810.16761.1

>prot_L-elsbetiae_contig7810.16761.1 ID=prot_L-elsbetiae_contig7810.16761.1|Name=mRNA_L-elsbetiae_contig7810.16761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
GDEAQRQVNLVAHTVDTLGWWMKRSVVGTERTHSFSLSDDKREPGRIYIT
TKMLVVPLRTALFQRRHRECVRILVVIACFAFCRRGRAAIRKVASPFSFL
LWCLGLDRWRHRSAANSLLRGNNNS
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mRNA from alignment at L-elsbetiae_contig7810:1661..2862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7810.16761.1 ID=mRNA_L-elsbetiae_contig7810.16761.1|Name=mRNA_L-elsbetiae_contig7810.16761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1202bp|location=Sequence derived from alignment at L-elsbetiae_contig7810:1661..2862- (Laminarionema elsbetiae ELsaHSoW15)
GGAGACGAAGCACAGAGACAAGTAAATCTAGTTGCGCATACCGTAGATAC
TCTTGGATGGTGGATGAAACGGAGCGTTGTTGGAACTGAACGGACGCATT
CATTCTCTCTCTCTGACGATAAGCGGGAGCCGGGAAGGATCTACATAACG
ACCAAGATGCTGGTGGTGCCCTTGAGGACGGCCCTCTTCCAGCGGCGACA
TCGCGAATGTGTTCGTATCCTCGTCGTCATAGCTTGTTTCGCCTTCTGTC
GGCGAGGGAGGGCAGCCATACGCAAGGTGTGTGGTTGCCGTGCCGCCGAA
GTGCAAAATGTTGGATGTTGGTTTTTAAATTTCCAGCCTCGGTGTGTGTG
TGTGTCCGTTGATCGACATGACAACACGCCTTTGTTCAAAGTTCCAATAT
TTCGAGGGGATGCTGCTCAACTCAGACTCACACCACACGTTTAGTTCTGT
GCGTCCATGCGCTTTTCTCGTCTGGTGTTGGTACGCCAGATGTCGGTACA
TACAATTCTCGTCAATTTCTTCACGAACACAACACTCATCAGTCCAGCGC
CACAGGGATTCTTCGAGTCAATGGTTGGTTGCACCTAACAAATCAGGTAC
TGCATCGCAGTCGACCCTCTCGCTTGGGTTAAAGAGTGCTGCCTGCCGAA
AACAAATCGTCTTAAGAAACGAATGTAGCCTATATACCACAGCAGAGGTC
GTACATATGTATGTACATAGTTCCGGTCAATAAGTAAACCATGTGTGCAA
CGTCGAAACGTTGTACATATAGACTATGTATGTATGTACAAGCTGTTCGG
CCCGCAGCCTCCATCACTCTCGCACAATTTATAATTGTCACGATTTTCTC
TAGCTCAGCAGTTCTAACCCCTAGCACCCGAGATCCCACGTAGAACCATT
TGCCAACGCTCGGTGGCAGCACCAGTAGCAGCAGCGCACACAAAGAGCGG
CCGGTCTGAGCTTACCTGGTCCTCAGCCATGAATGATAACAGACTTCCGG
TGCACCCCGTATGCACACTTACATACAAGTAGCGATCCCTACTACTGTAG
AAGTACTGTACGCCCTCAAGTTTCCTGTGTTGACCAAAATCAAACACACA
GGTGGCCAGCCCCTTCTCCTTCTTGCTTTGGTGCCTTGGCCTGGACCGTT
GGAGGCATCGGAGCGCCGCCAACAGTCTCTTGCGGGGGAATAACAACAGC
GG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7810:1661..2862-

>mRNA_L-elsbetiae_contig7810.16761.1 ID=mRNA_L-elsbetiae_contig7810.16761.1|Name=mRNA_L-elsbetiae_contig7810.16761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig7810:1661..2862- (Laminarionema elsbetiae ELsaHSoW15)
GGAGACGAAGCACAGAGACAAGTAAATCTAGTTGCGCATACCGTAGATAC
TCTTGGATGGTGGATGAAACGGAGCGTTGTTGGAACTGAACGGACGCATT
CATTCTCTCTCTCTGACGATAAGCGGGAGCCGGGAAGGATCTACATAACG
ACCAAGATGCTGGTGGTGCCCTTGAGGACGGCCCTCTTCCAGCGGCGACA
TCGCGAATGTGTTCGTATCCTCGTCGTCATAGCTTGTTTCGCCTTCTGTC
GGCGAGGGAGGGCAGCCATACGCAAGGGAGACGAAGCACAGAGACAAGTA
AATCTAGTTGCGCATACCGTAGATACTCTTGGATGGTGGATGAAACGGAG
CGTTGTTGGAACTGAACGGACGCATTCATTCTCTCTCTCTGACGATAAGC
GGGAGCCGGGAAGGATCTACATAACGACCAAGATGCTGGTGGTGCCCTTG
AGGACGGCCCTCTTCCAGCGGCGACATCGCGAATGTGTTCGTATCCTCGT
CGTCATAGCTTGTTTCGCCTTCTGTCGGCGAGGGAGGGCAGCCATACGCA
AGGTGGCCAGCCCCTTCTCCTTCTTGCTTTGGTGCCTTGGCCTGGACCGT
TGGAGGCATCGGAGCGCCGCCAACAGTCTCTTGCGGGGGAATAACAACAG
CGTGGCCAGCCCCTTCTCCTTCTTGCTTTGGTGCCTTGGCCTGGACCGTT
GGAGGCATCGGAGCGCCGCCAACAGTCTCTTGCGGGGGAATAACAACAGC
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