mRNA_L-elsbetiae_contig771.16651.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig771.16651.1
Unique NamemRNA_L-elsbetiae_contig771.16651.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig771.16651.1 vs. uniprot
Match: A0A7S6U9W3_9STRA (Photosystem I reaction center subunit II n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9W3_9STRA)

HSP 1 Score: 242 bits (618), Expect = 1.510e-80
Identity = 110/137 (80.29%), Postives = 124/137 (90.51%), Query Frame = 1
Query:    1 MTLYNKNYTPFFGGSTGGWLRAAETEEKYAITWEAKEERIFEMPTAGAAIMLIGENLLYFARKEQCLALGTQLRSLKIKEYRIYRIFPGGEIQFLHPKDGVFPEKVNKGRISVGSRNFSIGKNPNPSLLKFTGKSSY 411
            MT Y K YTP FGGSTGGWLRAAE EEKYAITW A +E++FEMPT GAA+MLIGENLLY ARKEQCLALGTQLRSL+IKEYRIYRIFPGGE+Q+LHPKDGVFPEKVN GRI +G+++FSIGKNPNP+ +KFTGK +Y
Sbjct:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKFTGKQTY 137          
BLAST of mRNA_L-elsbetiae_contig771.16651.1 vs. uniprot
Match: B2XT55_HETAK (Photosystem I reaction center subunit II n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT55_HETAK)

HSP 1 Score: 224 bits (570), Expect = 3.030e-73
Identity = 102/139 (73.38%), Postives = 121/139 (87.05%), Query Frame = 1
Query:    1 MTLYNKNYTPFFGGSTGGWLRAAETEEKYAITWEAKEERIFEMPTAGAAIMLIGENLLYFARKEQCLALGTQLRSLKIKEYRIYRIFPGGEIQFLHPKDGVFPEKVNKGRISVGSRNFSIGKNPNPSLLKFTGKSSYEA 417
            MTL  + ++P FGGSTGGWLRAAE EEKY ITW + +E++FEMPT GAAIML GENLLY ARKEQCLALGTQLRS KI +Y+IYR+FP GEIQ+LHPKDGVFPEKVN GR++VGSRNFSIGKNPNP  +KF+GK ++++
Sbjct:    1 MTLNLQTFSPIFGGSTGGWLRAAEIEEKYVITWSSSKEQLFEMPTGGAAIMLQGENLLYLARKEQCLALGTQLRSFKINDYKIYRLFPNGEIQYLHPKDGVFPEKVNPGRLAVGSRNFSIGKNPNPVSVKFSGKGTFDS 139          
BLAST of mRNA_L-elsbetiae_contig771.16651.1 vs. uniprot
Match: PSAD_TRICV (Photosystem I reaction center subunit II n=94 Tax=Sar TaxID=2698737 RepID=PSAD_TRICV)

HSP 1 Score: 218 bits (554), Expect = 8.320e-71
Identity = 103/139 (74.10%), Postives = 118/139 (84.89%), Query Frame = 1
Query:    1 MTLYNKNYTPFFGGSTGGWLRAAETEEKYAITWEAKEERIFEMPTAGAAIMLIGENLLYFARKEQCLALGTQLRSLKIKEYRIYRIFPGGEIQFLHPKDGVFPEKVNKGRISVGSRNFSIGKNPNPSLLKFTGKSSYEA 417
            MTL  +   P FGGSTGGWLRAAE EEKYAITW +K+E+IFEMPT GAAIM  GENLLY ARKEQCLALGTQLR+ KI +Y+IYRIFP GE+Q+LHPKDGVFPEKVN GR SV SR FSIGKNPNP+ +KF+G ++YE+
Sbjct:    1 MTLNLQTPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYES 139          
BLAST of mRNA_L-elsbetiae_contig771.16651.1 vs. uniprot
Match: B7T226_VAULI (Photosystem I reaction center subunit II n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T226_VAULI)

HSP 1 Score: 218 bits (554), Expect = 8.320e-71
Identity = 100/139 (71.94%), Postives = 118/139 (84.89%), Query Frame = 1
Query:    1 MTLYNKNYTPFFGGSTGGWLRAAETEEKYAITWEAKEERIFEMPTAGAAIMLIGENLLYFARKEQCLALGTQLRSLKIKEYRIYRIFPGGEIQFLHPKDGVFPEKVNKGRISVGSRNFSIGKNPNPSLLKFTGKSSYEA 417
            M L  K+Y P FGGSTGGWLRAAE EEKYAITW + +E+ FEMPT GAA+ML  +NLLY ARKEQCLALGTQL+  KI +Y+IYRIFP GE+QFLHPKDGVFPEKVN GR++VGSRNFSIGKNPNP  +KF+G+ +Y++
Sbjct:    1 MNLNLKSYFPKFGGSTGGWLRAAEVEEKYAITWTSSKEQTFEMPTGGAAVMLNDQNLLYLARKEQCLALGTQLKKFKINDYKIYRIFPNGEVQFLHPKDGVFPEKVNVGRLAVGSRNFSIGKNPNPISVKFSGQETYQS 139          
BLAST of mRNA_L-elsbetiae_contig771.16651.1 vs. uniprot
Match: A0A7S0CD48_9STRA (Photosystem I reaction center subunit II n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CD48_9STRA)

HSP 1 Score: 217 bits (553), Expect = 1.180e-70
Identity = 99/139 (71.22%), Postives = 119/139 (85.61%), Query Frame = 1
Query:    1 MTLYNKNYTPFFGGSTGGWLRAAETEEKYAITWEAKEERIFEMPTAGAAIMLIGENLLYFARKEQCLALGTQLRSLKIKEYRIYRIFPGGEIQFLHPKDGVFPEKVNKGRISVGSRNFSIGKNPNPSLLKFTGKSSYEA 417
            MTL  +   P FGGSTGGWLRAAE EEKYAITW +K+E++FEMPT GAAIM  GENL+YFARKEQC+ALGTQLR+ K+ +Y+IYRIFP GE+Q+LHPKDGVFPEKVN GRIS   R+FSIGKNPNP+ +KF+G ++YE+
Sbjct:    1 MTLNLQTSFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQVFEMPTGGAAIMRNGENLIYFARKEQCMALGTQLRTFKLNDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRISTNRRDFSIGKNPNPASIKFSGTATYES 139          
BLAST of mRNA_L-elsbetiae_contig771.16651.1 vs. uniprot
Match: UPI001EDDB867 (photosystem I reaction center subunit II (ferredoxin-binding) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=UPI001EDDB867)

HSP 1 Score: 216 bits (551), Expect = 2.380e-70
Identity = 101/139 (72.66%), Postives = 116/139 (83.45%), Query Frame = 1
Query:    1 MTLYNKNYTPFFGGSTGGWLRAAETEEKYAITWEAKEERIFEMPTAGAAIMLIGENLLYFARKEQCLALGTQLRSLKIKEYRIYRIFPGGEIQFLHPKDGVFPEKVNKGRISVGSRNFSIGKNPNPSLLKFTGKSSYEA 417
            MTL  +   P FGGSTGGWLR+AE EEKYAITW + +E+IFEMPT GAAIM  GENLLY ARKEQCLALGTQLR+ KI  Y+IYRIFP GE+QFLHPKDGVFPEK N GRI+  +RNFSIGKNPNP+ +KF+G S+YE+
Sbjct:    1 MTLNLQTPFPTFGGSTGGWLRSAEVEEKYAITWNSTKEQIFEMPTGGAAIMKTGENLLYLARKEQCLALGTQLRTFKINNYKIYRIFPSGEVQFLHPKDGVFPEKTNPGRIATNNRNFSIGKNPNPASIKFSGTSTYES 139          
BLAST of mRNA_L-elsbetiae_contig771.16651.1 vs. uniprot
Match: A0A514CPK3_9STRA (Photosystem I reaction center subunit II n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A514CPK3_9STRA)

HSP 1 Score: 216 bits (549), Expect = 4.810e-70
Identity = 98/139 (70.50%), Postives = 116/139 (83.45%), Query Frame = 1
Query:    1 MTLYNKNYTPFFGGSTGGWLRAAETEEKYAITWEAKEERIFEMPTAGAAIMLIGENLLYFARKEQCLALGTQLRSLKIKEYRIYRIFPGGEIQFLHPKDGVFPEKVNKGRISVGSRNFSIGKNPNPSLLKFTGKSSYEA 417
            MTL     +P FGGSTGGWLRAAE EEKY ITW +K+E++FEMPT G AIM +GENLLY ARKEQCLAL TQLR+ KI +Y+IYR+FP GE+QFLHP DGVFPEKVN GR+ V +RNFSIGKNPNP  +KF+GKS+++A
Sbjct:    1 MTLKIDTLSPIFGGSTGGWLRAAEIEEKYTITWTSKKEQLFEMPTGGGAIMRLGENLLYLARKEQCLALATQLRTFKITDYKIYRVFPNGEVQFLHPADGVFPEKVNSGRVGVNNRNFSIGKNPNPIKVKFSGKSTFDA 139          
BLAST of mRNA_L-elsbetiae_contig771.16651.1 vs. uniprot
Match: A0A2R4QPT8_9PHAE (Photosystem I reaction center subunit II n=4 Tax=Phaeophyceae TaxID=2870 RepID=A0A2R4QPT8_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.210e-69
Identity = 96/131 (73.28%), Postives = 114/131 (87.02%), Query Frame = 1
Query:    1 MTLYNKNYTPFFGGSTGGWLRAAETEEKYAITWEAKEERIFEMPTAGAAIMLIGENLLYFARKEQCLALGTQLRSLKIKEYRIYRIFPGGEIQFLHPKDGVFPEKVNKGRISVGSRNFSIGKNPNPSLLKF 393
            M++Y   Y P FGGSTGGWLR+AE EEKY ITW +++E++FEMPTAG A+ML+G+NLLY ARKEQCLALGTQLR LKIK+Y+IYRIFPGGEIQFLHPKDGVFPE  N+GR  VG R+FSIGKNPNP+ +K+
Sbjct:    1 MSIYPSKYMPIFGGSTGGWLRSAEFEEKYVITWNSEKEQLFEMPTAGTALMLLGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNEGRTPVGKRDFSIGKNPNPASIKW 131          
BLAST of mRNA_L-elsbetiae_contig771.16651.1 vs. uniprot
Match: A0A0S0GAH9_COSCS (Photosystem I reaction center subunit II n=44 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GAH9_COSCS)

HSP 1 Score: 213 bits (541), Expect = 6.330e-69
Identity = 97/131 (74.05%), Postives = 112/131 (85.50%), Query Frame = 1
Query:    1 MTLYNKNYTPFFGGSTGGWLRAAETEEKYAITWEAKEERIFEMPTAGAAIMLIGENLLYFARKEQCLALGTQLRSLKIKEYRIYRIFPGGEIQFLHPKDGVFPEKVNKGRISVGSRNFSIGKNPNPSLLKF 393
            M+LY   Y P FGGSTGGWLR+AE EEKY ITW +  E++FEMPTAG A+ML+G+NLLY ARKEQCLALGTQLR LKIK+Y+IYRIFPGGEIQFLHPKDGVFPE  N+GR  VG R+FSIGKNPNP+ +K+
Sbjct:    1 MSLYPSKYMPVFGGSTGGWLRSAEFEEKYVITWNSTTEQLFEMPTAGTALMLLGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNEGRTPVGKRDFSIGKNPNPASIKW 131          
BLAST of mRNA_L-elsbetiae_contig771.16651.1 vs. uniprot
Match: A0A2I4Q2A8_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A8_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 6.540e-69
Identity = 97/131 (74.05%), Postives = 114/131 (87.02%), Query Frame = 1
Query:    1 MTLYNKNYTPFFGGSTGGWLRAAETEEKYAITWEAKEERIFEMPTAGAAIMLIGENLLYFARKEQCLALGTQLRSLKIKEYRIYRIFPGGEIQFLHPKDGVFPEKVNKGRISVGSRNFSIGKNPNPSLLKF 393
            M ++   YTP FGGSTGGWLR+AE EEKY ITW +++E+ FEMPTAGAA+ML G+NLLY ARKEQCLALGTQLR+LKIK+Y+IYRIFPGGEIQFLHPKDGVFPE  N GR+ VG R+FSIGKNPNP+ +K+
Sbjct:    1 MVVFPLKYTPTFGGSTGGWLRSAECEEKYVITWTSEKEKFFEMPTAGAALMLAGQNLLYMARKEQCLALGTQLRTLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNAGRLPVGKRDFSIGKNPNPASVKW 131          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig771.16651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6U9W3_9STRA1.510e-8080.29Photosystem I reaction center subunit II n=1 Tax=S... [more]
B2XT55_HETAK3.030e-7373.38Photosystem I reaction center subunit II n=2 Tax=H... [more]
PSAD_TRICV8.320e-7174.10Photosystem I reaction center subunit II n=94 Tax=... [more]
B7T226_VAULI8.320e-7171.94Photosystem I reaction center subunit II n=1 Tax=V... [more]
A0A7S0CD48_9STRA1.180e-7071.22Photosystem I reaction center subunit II n=1 Tax=P... [more]
UPI001EDDB8672.380e-7072.66photosystem I reaction center subunit II (ferredox... [more]
A0A514CPK3_9STRA4.810e-7070.50Photosystem I reaction center subunit II n=1 Tax=D... [more]
A0A2R4QPT8_9PHAE2.210e-6973.28Photosystem I reaction center subunit II n=4 Tax=P... [more]
A0A0S0GAH9_COSCS6.330e-6974.05Photosystem I reaction center subunit II n=44 Tax=... [more]
A0A2I4Q2A8_9PHAE6.540e-6974.05Photosystem I reaction center subunit II n=1 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig771contigL-elsbetiae_contig771:23485..23904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue1.4e-53
Seed eggNOG ortholog35128.Thapsdraft1339
Preferred namepsaD
KEGG koko:K02692
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.PsaD
EggNOG OGs28I81@1,2QQIC@2759,2XFIZ@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size420
Cds size420
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.3943558-CDS-L-elsbetiae_contig771:23484..239041622816856.3943558-CDS-L-elsbetiae_contig771:23484..23904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig771 23485..23904 -
1691683865.0586689-CDS-L-elsbetiae_contig771:23484..239041691683865.0586689-CDS-L-elsbetiae_contig771:23484..23904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig771 23485..23904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig771.16651.1prot_L-elsbetiae_contig771.16651.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig771 23485..23904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig771.16651.1

>prot_L-elsbetiae_contig771.16651.1 ID=prot_L-elsbetiae_contig771.16651.1|Name=mRNA_L-elsbetiae_contig771.16651.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MTLYNKNYTPFFGGSTGGWLRAAETEEKYAITWEAKEERIFEMPTAGAAI
MLIGENLLYFARKEQCLALGTQLRSLKIKEYRIYRIFPGGEIQFLHPKDG
VFPEKVNKGRISVGSRNFSIGKNPNPSLLKFTGKSSYEA*
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mRNA from alignment at L-elsbetiae_contig771:23485..23904-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig771.16651.1 ID=mRNA_L-elsbetiae_contig771.16651.1|Name=mRNA_L-elsbetiae_contig771.16651.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig771:23485..23904- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTCTATATAATAAAAATTATACTCCATTTTTTGGAGGTAGTACAGG TGGTTGGTTAAGAGCAGCAGAAACAGAAGAGAAATATGCAATTACATGGG AAGCAAAAGAAGAACGCATTTTTGAAATGCCTACAGCTGGTGCAGCAATA ATGTTAATAGGTGAAAATCTTTTATATTTTGCAAGAAAAGAACAATGTCT TGCTTTAGGAACTCAATTAAGATCTTTAAAAATTAAAGAATATCGAATTT ATAGGATTTTTCCTGGGGGTGAAATTCAATTTTTACATCCTAAAGATGGT GTTTTTCCAGAAAAAGTAAATAAAGGAAGAATTTCAGTCGGTAGTCGTAA TTTTTCAATTGGAAAAAACCCAAACCCTTCTTTATTAAAATTTACAGGTA AATCATCATATGAAGCATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig771:23485..23904-

>mRNA_L-elsbetiae_contig771.16651.1 ID=mRNA_L-elsbetiae_contig771.16651.1|Name=mRNA_L-elsbetiae_contig771.16651.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig771:23485..23904- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTCTATATAATAAAAATTATACTCCATTTTTTGGAGGTAGTACAGG
TGGTTGGTTAAGAGCAGCAGAAACAGAAGAGAAATATGCAATTACATGGG
AAGCAAAAGAAGAACGCATTTTTGAAATGCCTACAGCTGGTGCAGCAATA
ATGTTAATAGGTGAAAATCTTTTATATTTTGCAAGAAAAGAACAATGTCT
TGCTTTAGGAACTCAATTAAGATCTTTAAAAATTAAAGAATATCGAATTT
ATAGGATTTTTCCTGGGGGTGAAATTCAATTTTTACATCCTAAAGATGGT
GTTTTTCCAGAAAAAGTAAATAAAGGAAGAATTTCAGTCGGTAGTCGTAA
TTTTTCAATTGGAAAAAACCCAAACCCTTCTTTATTAAAATTTACAGGTA
AATCATCATATGAAGCATAAATGACTCTATATAATAAAAATTATACTCCA
TTTTTTGGAGGTAGTACAGGTGGTTGGTTAAGAGCAGCAGAAACAGAAGA
GAAATATGCAATTACATGGGAAGCAAAAGAAGAACGCATTTTTGAAATGC
CTACAGCTGGTGCAGCAATAATGTTAATAGGTGAAAATCTTTTATATTTT
GCAAGAAAAGAACAATGTCTTGCTTTAGGAACTCAATTAAGATCTTTAAA
AATTAAAGAATATCGAATTTATAGGATTTTTCCTGGGGGTGAAATTCAAT
TTTTACATCCTAAAGATGGTGTTTTTCCAGAAAAAGTAAATAAAGGAAGA
ATTTCAGTCGGTAGTCGTAATTTTTCAATTGGAAAAAACCCAAACCCTTC
TTTATTAAAATTTACAGGTAAATCATCATATGAAGCATAA
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