mRNA_L-elsbetiae_contig771.16646.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig771.16646.1
Unique NamemRNA_L-elsbetiae_contig771.16646.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig771.16646.1 vs. uniprot
Match: A0A484L7Q7_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L7Q7_9ASTE)

HSP 1 Score: 147 bits (370), Expect = 1.710e-43
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 1
Query:    1 KQPTDPLRPVIPDNTCILRITAAAGTELADAYSSSNVRTSSLIKEVYNPKAFILHAILLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALVSFYLTN 318
            K PTD LRP+IPDN CIL ITAAAGTELADAYS   V  SS  KEV++P AF LHA LL QAFAHC KF TAASRRSL RVSVPVWLIILS+QLLI+ALVS+ LTN
Sbjct:   24 KPPTDALRPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFLTAASRRSLGRVSVPVWLIILSDQLLIIALVSYCLTN 129          
BLAST of mRNA_L-elsbetiae_contig771.16646.1 vs. uniprot
Match: A0A8J5F7R0_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F7R0_ZINOF)

HSP 1 Score: 145 bits (366), Expect = 9.180e-43
Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    7 PTDPLRPVIPDNTCILRITAAAGTELADAYSSSNVRTSSLIKEVYNPKAFILHAILLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALVSFYLTN 318
            P   LRP+IPDN CIL +TAAAGTELADAYSS  V  SS  KEV++P AF LHA LL QAFAHC KFPTAASRRSL RVSVPVWLIILS+QLLI+ALVS+ LTN
Sbjct:   35 PYHALRPIIPDNACILCLTAAAGTELADAYSSDTVIASSPRKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALVSYCLTN 138          
BLAST of mRNA_L-elsbetiae_contig771.16646.1 vs. uniprot
Match: M1BT56_SOLTU (Unknow protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1BT56_SOLTU)

HSP 1 Score: 144 bits (364), Expect = 5.670e-42
Identity = 78/99 (78.79%), Postives = 83/99 (83.84%), Query Frame = 1
Query:    1 KQPTDPLRPVIPDNTCILRITAAAGTELADAYSSSNVRTSSLIKEVYNPKAFILHAILLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVAL 297
            K PTD LRP+I DNTCIL ITAAAGTELADAYSS  V  SS  KEV++P AF LH  LL QAFAHCRKFPTAASRRSL RVSVPVWLIILS+QLLI+AL
Sbjct:   26 KPPTDALRPIISDNTCILYITAAAGTELADAYSSDTVIASSPGKEVHDPWAFYLHTTLLLQAFAHCRKFPTAASRRSLGRVSVPVWLIILSDQLLIIAL 124          
BLAST of mRNA_L-elsbetiae_contig771.16646.1 vs. uniprot
Match: A0A8J5I8X4_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5I8X4_ZINOF)

HSP 1 Score: 144 bits (363), Expect = 1.080e-41
Identity = 78/102 (76.47%), Postives = 85/102 (83.33%), Query Frame = 1
Query:   13 DPLRPVIPDNTCILRITAAAGTELADAYSSSNVRTSSLIKEVYNPKAFILHAILLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALVSFYLTN 318
            D LRP+IPDN CIL + AAAGTELADAYSS  V  SS  KEV++P AF LHA LL QAFAHC KFPTAASRRSL RVSVPVWLIILS+QLLI+ALVS+ LTN
Sbjct:   84 DALRPIIPDNACILCLPAAAGTELADAYSSDTVIASSPRKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALVSYCLTN 185          
BLAST of mRNA_L-elsbetiae_contig771.16646.1 vs. uniprot
Match: A0A8J5L2E8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5L2E8_ZINOF)

HSP 1 Score: 141 bits (355), Expect = 2.080e-41
Identity = 76/106 (71.70%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 KQPTDPLRPVIPDNTCILRITAAAGTELADAYSSSNVRTSSLIKEVYNPKAFILHAILLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALVSFYLTN 318
            K PTD L P+IP+N CIL +TAAA TELADAY S+ V  SSL KEV++P AF LH  LL QAF HC KFPTAASR+SL RVSVPVWLIILS+QLLI+ALVS  LTN
Sbjct:    9 KPPTDALHPIIPNNVCILCLTAAASTELADAYFSNTVIASSLRKEVHDPWAFYLHTALLHQAFVHCGKFPTAASRKSLGRVSVPVWLIILSDQLLIIALVSHCLTN 114          
BLAST of mRNA_L-elsbetiae_contig771.16646.1 vs. uniprot
Match: A0A834FX08_RHOSS (Uncharacterized protein n=3 Tax=asterids TaxID=71274 RepID=A0A834FX08_RHOSS)

HSP 1 Score: 140 bits (353), Expect = 1.460e-40
Identity = 76/99 (76.77%), Postives = 82/99 (82.83%), Query Frame = 1
Query:    1 KQPTDPLRPVIPDNTCILRITAAAGTELADAYSSSNVRTSSLIKEVYNPKAFILHAILLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVAL 297
            K PTD LRP+IPDN CIL +TAAAGTELADAYS  NV  SS  KEVY+P AF LHA LL QAFAHC +F TAASRRSL RVSVPVWLIILS+QLLI+AL
Sbjct:    9 KPPTDALRPIIPDNACILCLTAAAGTELADAYSPDNVIASSPGKEVYDPWAFYLHAALLRQAFAHCGRFRTAASRRSLGRVSVPVWLIILSDQLLIIAL 107          
BLAST of mRNA_L-elsbetiae_contig771.16646.1 vs. uniprot
Match: A0A5D2F7P2_GOSDA (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A5D2F7P2_GOSDA)

HSP 1 Score: 141 bits (356), Expect = 2.850e-40
Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 1
Query:    1 KQPTDPLRPVIPDNTCILRITAAAGTELADAYSSSNVRTSSLIKEVYNPKAFILHAILLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVAL 297
            K PTD LRP+IPDN CIL ITAAAGTELADAYS   V  SS  KEV++P AF LHA LL QAFAHC KFPTAASRRSL RVSVPVWLIILS+QLLI+AL
Sbjct:    7 KPPTDALRPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIAL 105          
BLAST of mRNA_L-elsbetiae_contig771.16646.1 vs. uniprot
Match: A0A5N6PTZ5_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PTZ5_9ASTR)

HSP 1 Score: 138 bits (348), Expect = 5.500e-40
Identity = 75/102 (73.53%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   13 DPLRPVIPDNTCILRITAAAGTELADAYSSSNVRTSSLIKEVYNPKAFILHAILLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALVSFYLTN 318
            D LRP+IPDN CIL ITAAAGTELADAYS   V  S+  KEV++P AF L A LL QAFA+C KFP AASRRSL RVSVPVWLIILS+QLLI+ALVS+Y+TN
Sbjct:   40 DALRPIIPDNACILCITAAAGTELADAYSPDTVIASTPGKEVHDPWAFYLQAALLRQAFAYCGKFPIAASRRSLGRVSVPVWLIILSDQLLIIALVSYYVTN 141          
BLAST of mRNA_L-elsbetiae_contig771.16646.1 vs. uniprot
Match: A0A8J5I3J7_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5I3J7_ZINOF)

HSP 1 Score: 137 bits (345), Expect = 6.920e-40
Identity = 74/106 (69.81%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 KQPTDPLRPVIPDNTCILRITAAAGTELADAYSSSNVRTSSLIKEVYNPKAFILHAILLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALVSFYLTN 318
            K PTD LRP+I DN CIL +T AA TELADAYSS  +  SS  KEV++P AF LHA +L QAFAH  KFPT ASRRSL R SVPVWLIILS+QLLI+ALVS+ LTN
Sbjct:    9 KPPTDALRPIISDNACILCLTTAASTELADAYSSDTIIASSSRKEVHDPWAFYLHAAMLRQAFAHYGKFPTTASRRSLGRASVPVWLIILSDQLLIIALVSYCLTN 114          
BLAST of mRNA_L-elsbetiae_contig771.16646.1 vs. uniprot
Match: A0A484M1T4_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484M1T4_9ASTE)

HSP 1 Score: 138 bits (347), Expect = 9.930e-40
Identity = 77/106 (72.64%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 KQPTDPLRPVIPDNTCILRITAAAGTELADAYSSSNVRTSSLIKEVYNPKAFILHAILLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALVSFYLTN 318
            K PTD LRP+IPDN CIL ITA AGTELADAYS   V  SS  KEV++P AF LHA LL QAF HC KF TAAS RSL RVSVPVWLIILS+QLLI+ALVS+  TN
Sbjct:   44 KPPTDALRPIIPDNACILCITADAGTELADAYSLDTVIASSPGKEVHDPWAFYLHAALLRQAFTHCGKFLTAASHRSLGRVSVPVWLIILSDQLLIIALVSYCPTN 149          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig771.16646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A484L7Q7_9ASTE1.710e-4376.42Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A8J5F7R0_ZINOF9.180e-4375.96Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
M1BT56_SOLTU5.670e-4278.79Unknow protein n=1 Tax=Solanum tuberosum TaxID=411... [more]
A0A8J5I8X4_ZINOF1.080e-4176.47Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A8J5L2E8_ZINOF2.080e-4171.70Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A834FX08_RHOSS1.460e-4076.77Uncharacterized protein n=3 Tax=asterids TaxID=712... [more]
A0A5D2F7P2_GOSDA2.850e-4077.78Uncharacterized protein n=2 Tax=Gossypium TaxID=36... [more]
A0A5N6PTZ5_9ASTR5.500e-4073.53Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A8J5I3J7_ZINOF6.920e-4069.81Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A484M1T4_9ASTE9.930e-4072.64Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig771contigL-elsbetiae_contig771:3845..4165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score151.8
Seed ortholog evalue1.9e-34
Seed eggNOG ortholog221288.JH992901_gene2608
Hectar predicted targeting categoryother localisation
EggNOG OGs1GAJY@1117,2DPM9@1,332MQ@2
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.196068-CDS-L-elsbetiae_contig771:3844..41651622816856.196068-CDS-L-elsbetiae_contig771:3844..4165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig771 3845..4165 +
1691683864.9571247-CDS-L-elsbetiae_contig771:3844..41651691683864.9571247-CDS-L-elsbetiae_contig771:3844..4165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig771 3845..4165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig771.16646.1prot_L-elsbetiae_contig771.16646.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig771 3845..4165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig771.16646.1

>prot_L-elsbetiae_contig771.16646.1 ID=prot_L-elsbetiae_contig771.16646.1|Name=mRNA_L-elsbetiae_contig771.16646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
KQPTDPLRPVIPDNTCILRITAAAGTELADAYSSSNVRTSSLIKEVYNPK
AFILHAILLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALV
SFYLTN*
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mRNA from alignment at L-elsbetiae_contig771:3845..4165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig771.16646.1 ID=mRNA_L-elsbetiae_contig771.16646.1|Name=mRNA_L-elsbetiae_contig771.16646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=321bp|location=Sequence derived from alignment at L-elsbetiae_contig771:3845..4165+ (Laminarionema elsbetiae ELsaHSoW15)
AAACAACCTACAGACCCTTTACGCCCAGTTATTCCGGATAACACTTGCAT CCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATGCTTATTCAT CAAGTAACGTCAGAACTTCTTCCTTGATAAAAGAAGTTTACAACCCGAAG GCCTTCATCCTTCACGCGATATTGCTCTGTCAGGCTTTTGCCCATTGCAG AAAATTCCCCACTGCTGCCTCCCGTAGAAGTCTGGACCGTGTCTCAGTTC CAGTGTGGCTGATCATCCTCTCAAACCAACTACTGATCGTCGCCTTGGTA AGCTTTTACCTTACCAACTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig771:3845..4165+

>mRNA_L-elsbetiae_contig771.16646.1 ID=mRNA_L-elsbetiae_contig771.16646.1|Name=mRNA_L-elsbetiae_contig771.16646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig771:3845..4165+ (Laminarionema elsbetiae ELsaHSoW15)
AAACAACCTACAGACCCTTTACGCCCAGTTATTCCGGATAACACTTGCAT
CCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATGCTTATTCAT
CAAGTAACGTCAGAACTTCTTCCTTGATAAAAGAAGTTTACAACCCGAAG
GCCTTCATCCTTCACGCGATATTGCTCTGTCAGGCTTTTGCCCATTGCAG
AAAATTCCCCACTGCTGCCTCCCGTAGAAGTCTGGACCGTGTCTCAGTTC
CAGTGTGGCTGATCATCCTCTCAAACCAACTACTGATCGTCGCCTTGGTA
AGCTTTTACCTTACCAACTAGAAACAACCTACAGACCCTTTACGCCCAGT
TATTCCGGATAACACTTGCATCCTCCGTATTACCGCGGCTGCTGGCACGG
AGTTAGCCGATGCTTATTCATCAAGTAACGTCAGAACTTCTTCCTTGATA
AAAGAAGTTTACAACCCGAAGGCCTTCATCCTTCACGCGATATTGCTCTG
TCAGGCTTTTGCCCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTAGAA
GTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAA
CTACTGATCGTCGCCTTGGTAAGCTTTTACCTTACCAACTAG
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