mRNA_L-elsbetiae_contig7680.16613.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7680.16613.1
Unique NamemRNA_L-elsbetiae_contig7680.16613.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7680.16613.1 vs. uniprot
Match: A0A8D5YZX2_9PHAE (NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Striaria attenuata TaxID=64933 RepID=A0A8D5YZX2_9PHAE)

HSP 1 Score: 383 bits (983), Expect = 7.320e-132
Identity = 208/262 (79.39%), Postives = 232/262 (88.55%), Query Frame = 1
Query:   10 SSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLGGILFLFFLISVGYSEDLQQSMKFFATTYIGSLVLFSFITYEDHLKTIFQPKIVTDN----IE-------ALNDKIVSWKNLCDSENLTEFFRLSFYKENVDSSYCTNNMWFVDFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKASSRTLP 762
            +STQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYL G++F   LI+VG S DLQQSMKFFAT+YIGSLV FS ITYE++++ +FQP ++ ++    IE       +LN++I SW NLCDSE LTEFFRLS+ KE++++SY  NNMWFV+FDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEK SSR +P
Sbjct:   22 TSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLAGLVFCCCLIAVGLSGDLQQSMKFFATSYIGSLVFFSAITYEEYIRKVFQPIVIGEDKFSKIEVKKIYDKSLNERIDSWYNLCDSEGLTEFFRLSYNKESIENSYGINNMWFVEFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKTSSRAIP 283          
BLAST of mRNA_L-elsbetiae_contig7680.16613.1 vs. uniprot
Match: A0A8D5Z5F5_9PHAE (NADH-ubiquinone oxidoreductase chain 6 n=2 Tax=Chordariaceae TaxID=66220 RepID=A0A8D5Z5F5_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 2.430e-130
Identity = 206/261 (78.93%), Postives = 227/261 (86.97%), Query Frame = 1
Query:   10 SSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLGGILFLFFLISVGYSEDLQQSMKFFATTYIGSLVLFSFITYEDHLKTIFQP------KIVTDNI-----EALNDKIVSWKNLCDSENLTEFFRLSFYKENVDSSYCTNNMWFVDFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKASSRTL 759
            +STQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRL YL G++    LI VG++E+LQQ MKFFATTYIGSL+LFSF+TYE+++K  FQP      KI    I     E L++++ SW N CDSE LTEFFRLSF+K+++D+SY  NNMWFV+FDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEK  SRTL
Sbjct:   22 TSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLFYLAGLVLFVCLIVVGWNENLQQFMKFFATTYIGSLILFSFMTYEEYIKKNFQPIIMGEDKITNTEITKTFQELLDERVESWYNFCDSEGLTEFFRLSFHKQSIDTSYGINNMWFVEFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKTPSRTL 282          
BLAST of mRNA_L-elsbetiae_contig7680.16613.1 vs. uniprot
Match: A0A8D5Z4C0_9PHAE (NADH-ubiquinone oxidoreductase chain 6 n=3 Tax=Punctaria TaxID=27943 RepID=A0A8D5Z4C0_9PHAE)

HSP 1 Score: 367 bits (943), Expect = 8.300e-126
Identity = 202/261 (77.39%), Postives = 226/261 (86.59%), Query Frame = 1
Query:   10 SSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLGGILFLFFLISVGYSEDLQQSMKFFATTYIGSLVLFSFITYEDHLKTIFQPKIV-------TDNI----EALNDKIVSWKNLCDSENLTEFFRLSFYKENVDSSYCTNNMWFVDFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKASSRTL 759
            +STQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKA+EN WSAKKKRLLYL GI+F F L++VG+SEDLQQ +KFFATTYIGSLVLFS +TYE+++K  F+  I        T+ I    E L+ +I  W+NLCDSE+L  FFRLSF+KE++D+SYC NNMWFV+FD SCALNDPSYLLYSTYAILLII GVILLIAMVGAI+LTLQK+CPE LYRQLGRESKNAVFSIKEK SSRT 
Sbjct:   22 TSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAVENSWSAKKKRLLYLAGIVFFFCLMAVGWSEDLQQLIKFFATTYIGSLVLFSGMTYEEYIKKEFEFLIKGEDNALNTEGIKTFQELLDKRIEFWRNLCDSEDLLYFFRLSFHKESIDTSYCLNNMWFVEFDRSCALNDPSYLLYSTYAILLIIGGVILLIAMVGAISLTLQKSCPEYLYRQLGRESKNAVFSIKEKTSSRTF 282          
BLAST of mRNA_L-elsbetiae_contig7680.16613.1 vs. uniprot
Match: A0A3G5FPP4_9PHAE (NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPP4_9PHAE)

HSP 1 Score: 365 bits (936), Expect = 1.030e-124
Identity = 197/262 (75.19%), Postives = 224/262 (85.50%), Query Frame = 1
Query:   10 SSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLGGILFLFFLISVGYSEDLQQSMKFFATTYIGSLVLFSFITYEDHLKTIFQPKIVTD----NIE-------ALNDKIVSWKNLCDSENLTEFFRLSFYKENVDSSYCTNNMWFVDFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKASSRTLP 762
            ++TQNPVYSGLYLVL+FFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLG  +F   LI + Y++DLQ S+KFFATTYIGSLVLF+ I+YE++++  F   I+ D    N E        LN++I  W  LC++E LTEFF LSF+KENVDSSY TNNMWFV+FDTSCALNDPSYLLYSTYAILLIIAG+ILLIAMVGAI+LTLQKNCPESLYRQLGRESKNA+F IKEK + ++LP
Sbjct:   22 TTTQNPVYSGLYLVLVFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLGSFIFFCCLILISYNKDLQDSLKFFATTYIGSLVLFNLISYEEYIEKSFHSLILNDEKFVNTENRKPFSNLLNERIEGWNALCNTEGLTEFFNLSFHKENVDSSYETNNMWFVEFDTSCALNDPSYLLYSTYAILLIIAGIILLIAMVGAISLTLQKNCPESLYRQLGRESKNAIFLIKEKRACQSLP 283          
BLAST of mRNA_L-elsbetiae_contig7680.16613.1 vs. uniprot
Match: A0A8D6BYQ9_9PHAE (NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Eudesme virescens TaxID=309723 RepID=A0A8D6BYQ9_9PHAE)

HSP 1 Score: 365 bits (936), Expect = 1.030e-124
Identity = 201/261 (77.01%), Postives = 222/261 (85.06%), Query Frame = 1
Query:   10 SSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLGGILFLFFLISVGYSEDLQQSMKFFATTYIGSLVLFSFITYEDHLKTIFQPKIVTDNI-----------EALNDKIVSWKNLCDSENLTEFFRLSFYKENVDSSYCTNNMWFVDFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKASSRTL 759
            +STQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYL G+ FL  LI +G SE+LQ+SMKFFAT +IGS VLFS ITY++++  IFQ  I+ +             E LN++   W+NLCDSE LTEFF  SF+KE+ D+SY  NN+WFV+FDTSCALNDPSYLLYSTYAILLIIAG+ILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKAS R L
Sbjct:   22 TSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLLGLAFLCCLIIIGLSENLQESMKFFATIFIGSSVLFSVITYKEYITKIFQSIIMEEEKFSNREVKKIFRELLNERTDLWQNLCDSEGLTEFFHFSFHKESADNSYGINNIWFVEFDTSCALNDPSYLLYSTYAILLIIAGIILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKASPRPL 282          
BLAST of mRNA_L-elsbetiae_contig7680.16613.1 vs. uniprot
Match: A0A8D5ZBT6_9PHAE (NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Setoutiphycus delamareoides TaxID=2849225 RepID=A0A8D5ZBT6_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 1.200e-123
Identity = 202/261 (77.39%), Postives = 222/261 (85.06%), Query Frame = 1
Query:   10 SSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLGGILFLFFLISVGYSEDLQQSMKFFATTYIGSLVLFSFITYEDHLKTIFQPKIVTD----NIEA-------LNDKIVSWKNLCDSENLTEFFRLSFYKENVDSSYCTNNMWFVDFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKASSRTL 759
            +STQNPVYSGLYLVLLFFLGSGI FLLGLEFI LLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRL +  G+ FLF L+ +G+SE+LQQS+K FATT IG+LVLFS +TYED +K  FQP I+ +    N E        L+ +I SW +LCDSE LTEFFRLSF KEN+D+SY  N+MWFVDFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVF IKEK  +RTL
Sbjct:   22 TSTQNPVYSGLYLVLLFFLGSGIGFLLGLEFIGLLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLFFFVGLGFLFCLLCIGWSENLQQSIKSFATTCIGTLVLFSAMTYEDSIKKKFQPIILREDKFLNTEVTKRFQDLLDGRIESWHHLCDSEGLTEFFRLSFNKENMDTSYGINHMWFVDFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFLIKEKIPTRTL 282          
BLAST of mRNA_L-elsbetiae_contig7680.16613.1 vs. uniprot
Match: E6ZET2_ECTSI (NADH-ubiquinone oxidoreductase chain 6 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZET2_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 3.920e-123
Identity = 199/275 (72.36%), Postives = 225/275 (81.82%), Query Frame = 1
Query:   10 SSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLGGILFLFFLISVGYSEDLQQSMKFFATTYIGSLVLFSFITYEDHLKTIFQPKIVTDN-------------------------IEALNDKIVSWKNLCDSENLTEFFRLSFYKENVDSSYCTNNMWFVDFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKASSRTL 759
            +STQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRL+Y  G+ FLFFLI+VG+SE+LQ  +K FATTYIGSLVLF+ + YE+++K  FQ  +  +                          IE++++K+  W NLCDSE LTEFFRL F+KE+VDSSY +N MWF++FD+SCALNDPSYLLYSTYAILLIIAGVILLIAMVGAI+LTLQKNCPESLYRQLGRESKNAVFSIKEK  SR L
Sbjct:   22 TSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLVYAIGLTFLFFLIAVGWSEELQNLIKLFATTYIGSLVLFNIVKYEEYIKENFQSMVNNEIAEGHLNKIKDISEFNASNKKAQKTFIESVDEKVDYWFNLCDSEGLTEFFRLLFHKESVDSSYVSNKMWFIEFDSSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAISLTLQKNCPESLYRQLGRESKNAVFSIKEKKISRDL 296          
BLAST of mRNA_L-elsbetiae_contig7680.16613.1 vs. uniprot
Match: A0A089MX86_PETFA (NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089MX86_PETFA)

HSP 1 Score: 348 bits (893), Expect = 6.390e-118
Identity = 198/282 (70.21%), Postives = 222/282 (78.72%), Query Frame = 1
Query:    1 GFK-SSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLGGILFLFFLISVGYSEDLQQSMKFFATTYIGSLVLFSFITYEDHLKTIFQP----KIVTDNI------------------------EALNDKIVSWKNLCDSENLTEFFRLSFYKENVDSSYCTNNMWFVDFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKASSRTL 759
            GFK +STQNPVYSGLYLVL FFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLY+  +L LF +I + Y+ DL   +K FATTYIGSLV FS  TYED++K  FQP    +I++DN+                        + LN++I  W +LC SE LTEFFRL F KE+V+SSY  N+ WFV+FD+SCALNDPSYLLYSTYAILLIIAGVILLIAMVGAI+LTLQKNCPESLYRQLGRESKNAVFSIKEK  SR +
Sbjct:   18 GFKVTSTQNPVYSGLYLVLSFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYIFSLLVLFTIILISYNSDLFNLLKSFATTYIGSLVFFSVSTYEDYIKKNFQPVVVAEIISDNLNKEKKGIEINNSNSSDTEVKKTITDLLNERINLWDDLCQSEGLTEFFRLLFNKESVNSSYSLNSTWFVEFDSSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAISLTLQKNCPESLYRQLGRESKNAVFSIKEKKDSRVI 299          
BLAST of mRNA_L-elsbetiae_contig7680.16613.1 vs. uniprot
Match: A0A2H4ZQY9_9PHAE (NADH-ubiquinone oxidoreductase chain 6 n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A2H4ZQY9_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 1.050e-116
Identity = 191/278 (68.71%), Postives = 222/278 (79.86%), Query Frame = 1
Query:   10 SSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLGGILFLFFLISVGYSEDLQQSMKFFATTYIGSLVLFSFITYEDHLKTIFQP----KIVTDNI------------------------EALNDKIVSWKNLCDSENLTEFFRLSFYKENVDSSYCTNNMWFVDFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKASSRTL 759
            +STQNPVYSGLYLVL FFLGS IAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLY+  +  LF ++ + Y+ +L + +K FATTYIGSLV+FS  TYED++K  FQP    +IV+DN+                        + LN++I SW +LC+SE LTEFFRL F KE+V+SSY  N+ WF++FD+SCALNDPSYLLYSTYAILLIIAG+ILLIAMVGAI+LTLQKNCPESLYRQLGRESKNAVFSIKEK  SR++
Sbjct:   22 TSTQNPVYSGLYLVLTFFLGSAIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYIFSLFLLFIIVLISYNLNLSELLKSFATTYIGSLVVFSISTYEDYIKKNFQPVIVAEIVSDNLNIEKKGIEINKSSGPDVEAKKPMTDLLNERINSWHDLCNSEGLTEFFRLLFNKESVNSSYNVNSTWFIEFDSSCALNDPSYLLYSTYAILLIIAGIILLIAMVGAISLTLQKNCPESLYRQLGRESKNAVFSIKEKKGSRSV 299          
BLAST of mRNA_L-elsbetiae_contig7680.16613.1 vs. uniprot
Match: A0A0U1XCQ8_SCYLO (NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XCQ8_SCYLO)

HSP 1 Score: 337 bits (864), Expect = 1.330e-113
Identity = 186/271 (68.63%), Postives = 213/271 (78.60%), Query Frame = 1
Query:   10 SSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRLLYLGGILFLFFLISVGYSEDLQQSMKFFATTYIGSLVLFSFITYEDHLKTIFQPKIVTDNI----------------------EALNDKIVSWKNLCDSENLTEFFRLSFYKENVDSSYCTNNMWFVDFDTSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKASSRT 756
            +STQNPVYSGLYLVL FFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKR+LY+ G+  LF L+ + Y+ +L   +K FA+TYI SLVLFS  TYED++K  FQP I+ + +                      E L+ +I  W  LC++E LTEFFRL F  EN+  SY +N  WF++FD+SCALNDPSYLLYSTYAILLIIAGVILLIAMVGAI+LTLQKNCPESLYRQLGRESKNA+FSIKEK SSR+
Sbjct:   22 TSTQNPVYSGLYLVLTFFLGSGIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSAKKKRILYVFGLFLLFSLVLISYNSELLNLIKLFASTYISSLVLFSVSTYEDYIKKNFQPVIIAEAVSNNLIKDKEGIKAEIEINKAVTEILDKRINLWDELCNTEGLTEFFRLLFNNENIKLSYDSNPTWFIEFDSSCALNDPSYLLYSTYAILLIIAGVILLIAMVGAISLTLQKNCPESLYRQLGRESKNAIFSIKEKRSSRS 292          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7680.16613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D5YZX2_9PHAE7.320e-13279.39NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Str... [more]
A0A8D5Z5F5_9PHAE2.430e-13078.93NADH-ubiquinone oxidoreductase chain 6 n=2 Tax=Cho... [more]
A0A8D5Z4C0_9PHAE8.300e-12677.39NADH-ubiquinone oxidoreductase chain 6 n=3 Tax=Pun... [more]
A0A3G5FPP4_9PHAE1.030e-12475.19NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Cla... [more]
A0A8D6BYQ9_9PHAE1.030e-12477.01NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Eud... [more]
A0A8D5ZBT6_9PHAE1.200e-12377.39NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Set... [more]
E6ZET2_ECTSI3.920e-12372.36NADH-ubiquinone oxidoreductase chain 6 n=2 Tax=Ect... [more]
A0A089MX86_PETFA6.390e-11870.21NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Pet... [more]
A0A2H4ZQY9_9PHAE1.050e-11668.71NADH-ubiquinone oxidoreductase chain 6 n=2 Tax=End... [more]
A0A0U1XCQ8_SCYLO1.330e-11368.63NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Scy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7680contigL-elsbetiae_contig7680:1718..2485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.5
Seed ortholog evalue4.1e-11
Seed eggNOG ortholog70448.Q0P3G0
Preferred namenad6
KEGG rclassRC00061
KEGG koko:K03884
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Belongs to the complex I subunit 6 family
EggNOG OGs2S14H@2759,389Z6@33090,COG0839@1
EC1.6.5.3
COG Functional cat.C
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size768
Cds size768
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.197875-CDS-L-elsbetiae_contig7680:1717..24851622816853.197875-CDS-L-elsbetiae_contig7680:1717..2485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7680 1718..2485 +
1691683862.6929185-CDS-L-elsbetiae_contig7680:1717..24851691683862.6929185-CDS-L-elsbetiae_contig7680:1717..2485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7680 1718..2485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7680.16613.1prot_L-elsbetiae_contig7680.16613.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7680 1718..2485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7680.16613.1

>prot_L-elsbetiae_contig7680.16613.1 ID=prot_L-elsbetiae_contig7680.16613.1|Name=mRNA_L-elsbetiae_contig7680.16613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=256bp
GFKSSTQNPVYSGLYLVLLFFLGSGIAFLLGLEFIALLFLLVYAGAIAVL
VLFVVMMLDVKAIENPWSAKKKRLLYLGGILFLFFLISVGYSEDLQQSMK
FFATTYIGSLVLFSFITYEDHLKTIFQPKIVTDNIEALNDKIVSWKNLCD
SENLTEFFRLSFYKENVDSSYCTNNMWFVDFDTSCALNDPSYLLYSTYAI
LLIIAGVILLIAMVGAITLTLQKNCPESLYRQLGRESKNAVFSIKEKASS
RTLPC*
back to top

mRNA from alignment at L-elsbetiae_contig7680:1718..2485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7680.16613.1 ID=mRNA_L-elsbetiae_contig7680.16613.1|Name=mRNA_L-elsbetiae_contig7680.16613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig7680:1718..2485+ (Laminarionema elsbetiae ELsaHSoW15)
GGTTTTAAATCTAGTACACAAAACCCAGTTTATAGTGGACTATATCTTGT ATTACTTTTTTTCCTAGGTTCTGGTATTGCTTTTTTATTGGGTCTTGAAT TCATCGCTTTACTTTTTCTTTTGGTTTACGCTGGTGCTATTGCTGTGCTA GTTTTATTCGTAGTTATGATGCTCGATGTTAAAGCCATTGAAAACCCTTG GTCTGCTAAAAAAAAGCGGTTATTATACCTTGGAGGTATACTTTTCCTAT TTTTTTTAATTAGTGTTGGATATAGTGAAGATCTACAACAGTCCATGAAA TTTTTTGCAACTACTTATATAGGGTCATTAGTTCTTTTTAGCTTTATAAC TTATGAAGATCATTTAAAAACAATTTTTCAACCTAAAATTGTTACTGATA ATATAGAAGCTCTAAATGACAAAATTGTATCATGGAAAAATTTATGTGAC TCTGAAAATCTCACAGAATTTTTTCGTTTATCTTTTTATAAAGAAAATGT TGATTCTTCTTATTGTACCAATAATATGTGGTTTGTTGATTTTGATACTT CTTGTGCTTTGAACGATCCAAGTTATTTATTATACTCTACTTACGCAATA TTGTTAATAATTGCAGGAGTTATTCTTTTAATAGCTATGGTTGGTGCTAT CACTTTAACTTTACAAAAAAATTGTCCTGAATCTTTATACCGTCAACTAG GTAGAGAATCTAAAAATGCTGTTTTTTCAATTAAGGAAAAAGCTTCATCT AGAACTCTCCCTTGTTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7680:1718..2485+

>mRNA_L-elsbetiae_contig7680.16613.1 ID=mRNA_L-elsbetiae_contig7680.16613.1|Name=mRNA_L-elsbetiae_contig7680.16613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1536bp|location=Sequence derived from alignment at L-elsbetiae_contig7680:1718..2485+ (Laminarionema elsbetiae ELsaHSoW15)
GGTTTTAAATCTAGTACACAAAACCCAGTTTATAGTGGACTATATCTTGT
ATTACTTTTTTTCCTAGGTTCTGGTATTGCTTTTTTATTGGGTCTTGAAT
TCATCGCTTTACTTTTTCTTTTGGTTTACGCTGGTGCTATTGCTGTGCTA
GTTTTATTCGTAGTTATGATGCTCGATGTTAAAGCCATTGAAAACCCTTG
GTCTGCTAAAAAAAAGCGGTTATTATACCTTGGAGGTATACTTTTCCTAT
TTTTTTTAATTAGTGTTGGATATAGTGAAGATCTACAACAGTCCATGAAA
TTTTTTGCAACTACTTATATAGGGTCATTAGTTCTTTTTAGCTTTATAAC
TTATGAAGATCATTTAAAAACAATTTTTCAACCTAAAATTGTTACTGATA
ATATAGAAGCTCTAAATGACAAAATTGTATCATGGAAAAATTTATGTGAC
TCTGAAAATCTCACAGAATTTTTTCGTTTATCTTTTTATAAAGAAAATGT
TGATTCTTCTTATTGTACCAATAATATGTGGTTTGTTGATTTTGATACTT
CTTGTGCTTTGAACGATCCAAGTTATTTATTATACTCTACTTACGCAATA
TTGTTAATAATTGCAGGAGTTATTCTTTTAATAGCTATGGTTGGTGCTAT
CACTTTAACTTTACAAAAAAATTGTCCTGAATCTTTATACCGTCAACTAG
GTAGAGAATCTAAAAATGCTGTTTTTTCAATTAAGGAAAAAGCTTCATCT
AGAACTCTCCCTTGTTAAGGTTTTAAATCTAGTACACAAAACCCAGTTTA
TAGTGGACTATATCTTGTATTACTTTTTTTCCTAGGTTCTGGTATTGCTT
TTTTATTGGGTCTTGAATTCATCGCTTTACTTTTTCTTTTGGTTTACGCT
GGTGCTATTGCTGTGCTAGTTTTATTCGTAGTTATGATGCTCGATGTTAA
AGCCATTGAAAACCCTTGGTCTGCTAAAAAAAAGCGGTTATTATACCTTG
GAGGTATACTTTTCCTATTTTTTTTAATTAGTGTTGGATATAGTGAAGAT
CTACAACAGTCCATGAAATTTTTTGCAACTACTTATATAGGGTCATTAGT
TCTTTTTAGCTTTATAACTTATGAAGATCATTTAAAAACAATTTTTCAAC
CTAAAATTGTTACTGATAATATAGAAGCTCTAAATGACAAAATTGTATCA
TGGAAAAATTTATGTGACTCTGAAAATCTCACAGAATTTTTTCGTTTATC
TTTTTATAAAGAAAATGTTGATTCTTCTTATTGTACCAATAATATGTGGT
TTGTTGATTTTGATACTTCTTGTGCTTTGAACGATCCAAGTTATTTATTA
TACTCTACTTACGCAATATTGTTAATAATTGCAGGAGTTATTCTTTTAAT
AGCTATGGTTGGTGCTATCACTTTAACTTTACAAAAAAATTGTCCTGAAT
CTTTATACCGTCAACTAGGTAGAGAATCTAAAAATGCTGTTTTTTCAATT
AAGGAAAAAGCTTCATCTAGAACTCTCCCTTGTTAA
back to top